Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030991801.1 PREDICTED: Strongylocentrotus purpuratus trinucleotide repeat-containing gene 6C protein (LOC581062), transcript variant X1, mRNA TAATACTCCATTTTGTACCTTCCCTGGACGCGAAGAGAATCTCTTTCGCCGTAATTTTGCATCAATATTT GCGAAATCTGGCGAAGAATCCAACTCAGTGGCTTTCGTTTACCCCGTATGGCTTCAGAAGAGAAATGTGC TTTCTTAAAATCTGTTCTTGTGAATGCTGATTCGTCAGAACAGGAGCTAACTCAAGCCTATCTGCAGCTT GCTTTTCAATACACATCTAATAAATCTTTAAAGAACGATGAGAGAAGCCATGCAGCCCGACTCAGGGATA TAACGAGCTTATTTCTGAAGCGCGTGCCAGCAGAGAAGTACACAGGCCAGAGTGATGATGAGATACTTCT TCATGTGTTCAAGGATGCCGTTTCATTTACGTTTAAAGATAACAGCCAGAACAGAGTACTTGAATCGTCT TCAAGTCAAAGTTACGAGAGTACGCCAAATTTGAACGGGTCTACTACCACGCAGGTGCAGGATTCAAAGC CCACCAATCAAGGAATTCCAAACATATTCGACATAAAGGAAAGTCCTTCAAAGGTTACAAACAAGCAAGA GTGTATTCAGGATCAAGTAGTTGGCCCGGCTCAAAGTCAGGTCAAGACACAATCCGTGTTCAACTCTGAG GAAGCTCAGCACAGCGTATCAGGACAAAGCAAGAATCAAGACCAGGTCAAGGTTGACAAACCAAGGTCAC CGTCATCCCCAGTGGGAGGGATCGGACAAGCCCCTCAGAACACAGTCTCACACACACAGAGAGATACAAT CAATGAGACTGCCTGTGAACAACAAAAAGCCAAAGATATTGATCAAGCCAAAGGAGGAGAAGGAGGAGAG AGAAAGGAGAACCAAGAGCAGTATCGTCATCAGGAGCGTGGAGGCTCGCAGGCAGAGTCCACCAACCCGC TATCTGATAGCATCTTTAATCACAATTCGCCAGCAATAAATATGAGTCAGTGGAGTGAAAACCAGAAGGG AGCGTGGCCCAATGGACCCGTCACCTCTAGCGGCTGGACTCCAATGGATCCAAGCCATGGCCAGCCGTCT GCCATGAGCCAAGACAATGGAAAAGGTAACAGCTCACCAGGAACGGGTGTAATAGGCTCCATTTGGGGGT CAGGTAGCGCCAGTGGATCCACCCCTACATCCAGCGGCTGGGGCAGTATCCCAGCCAGCACATCGTCGTC CTCGCCGTTCCAAAACAGTCTCTTTCAGAACCCCACCAGCAACGGGCACAGTGGTGGTTCATCAGTGTGG GGCACCCCCACCACCCCGCAGCCAGGCGGTAAGGGGGCCCTGCCATTCGGGGGCACCAATCCTGTGTCAG CACCGTCTACTACCTCAGCAAGCAATCCATCTACATCCCAGAGCTCGGGCTGGGACACCAGTGCCAATCA GAACGGGATCGAGCCCCAGCCGGCTTCGACTCCCACGAGTGCAGAGAGCAACCCGGCTGTGCCCACTTCG CAGAGCAGCGGTGGCGCCCCCAGTAATGGAAATGGAAACGGCGGCGGTGGTGGTCCCAGTGAAGGCGGTC CAGCTGGCAATGGAAAAGAGCCCCAGCAACAAATTCCGACTTCATCCGCAGTCAATACCAGTAATGCCCA AGGCTCCTCTTGGGGATCTAGTAATCCACCAGGTCCAGCAACTCTGACAGGAACATCATCATGGGGAGCT CCACCATCTCAGGCCCCAGGTGGATGGGGTGCAGACCCTTCAGGACAACCGGGTGGACATGATAACAAGC CATGGGGCGGCGGAAACAGCATGCCAGCCACAAGTTCCAGGGGATGGGGTGGTAGCAATATGCCCAATGA AGCTACCGGCACTGGAGGATGGGGAAAGCCTCCTGCTACCGAAGCTCCAGGTGGATGGGGAAATAGACCT CCGACTACTCCAACCAGTGGACCACCACCAGGACCACCACCCCCAGGACCACCTGCAGGATGGAACAAAG AGGGAAACAAAGACAACAACCAACAAGCAGCTCCAGGATGGAACAACCGCCCAAGTGGCCCAGGTGGATG GGGCAACCAGCCCACACAACCTCCCCCTGGACCTCCTGGACCCGGAGGAATGAAGAAAGACCAACCAGAC AATGGACAGTCTGGCTGGGGCAAGCCAGCAGGAAATGCCCCTTGGGCTCAGACAGCCAGCAAGGGTACCA CTGACCACAGGGGAATGAATCCCGGAGAAACAACTCCTGTAGATCAGGCTTCGATTGTAGCACTAGTGAA GACACCATGGGGAAAGAGGCCAGTCAACCAGGAAGCAAAGTGGGACAAAACAGCCCCTCCACAACCAATG TCAAACCAAGTTGGTACAACAGGCTGGGGATCCCAACCACCAACATCAGACCGACAGTGGGAGAAGGCTG AGCAGCCCAAACAGTCTGCATGGGGCAAACCACACGCTCCACAAACACCAACGGAATCCTCTTGGGGGAG TCAGCCGCCCACATCCGGACCACCACCAAGCTCTCAGTCTTCAGGCTGGGGACCACCCAAAGAGAGAAAC GATGGCCAGGATCCTGGTTGGGGTCAACCACCTACTACCAGTGCTCCTTCTGGAATGCCAGGGGGGCCAG GGCCACTTGGACCCCCGCCAGGGAGCCAAGCCTTGGGACCTCCTGGTCAGCCTGGATCTCACGGACCCCC TGGCCAGCCTGGATCTCACGGTCCCCCTGGCCAACCCGGTTCTCACGGACCCCCTGGCCAGCCTGGATCT CACGGACCCCCTGGCCAGCCTGGATCCCATGGACCCCCTGGCCAGCCTGGATCTCACGGACCCCCTGGCC AGCCTGGATCCCATGGACCCCCTGGTCAGCCTGGATCCCACGGACCCCCTGGCCAGCCTGGATCTCACGG ACCTCCTGGCCAGCCTGGATCCCACGGACCCCCTGGCCAGCCTGGATCTCATGGACCCCCTTCTGCTCCT AGTTTTAACACTGAGAGATCTAGTCCTCCACAGAAAGACGCCATGGAGACAGGCAGCAATGCCTCGAGCA CTACGCCACAGCCATCGGTCGATGAACCTGGACCACCACCTAAGAAGATAGTTGCCACTGGTTGGGGAGA AGCGATCATGATGGAGCGCCAGCAGGGCCAGGGGACTTCTGACAATGGAACCAGCCATTGGGGCGACCCC GGCGACCACAACAAACGCCTCACTCGCCGACAAGCCGGTGGGCACATGCCGCACATGGGTGGCAACCCCC AGAACAGTACTATGCAAGGTCCACCCCCCTCGGGCCCACAAGGTGACGCCGCCATGCCTCCTTCCTCCAT GATGCCCAATGCTCCGCCATCACAGTTCAAACCTGACAACCAGTGGGATGACAACAAGAGCAAGCAAGGC AGTTGGGGAGATTACCCTAACCATCGATCCAACAACAACAACAGCGGTGGAAGCATGTGGAACCAACCAG GGAACCAACAAGGGGGCAACAAATGGGATCAGTCTTCCACGCCTTCATGGGGCCCGTCCAGCAGTACTAA CGTCAGTACTCAGAATAAGGATTCTATGCAACAAAACTGGCACGATGATAATAGTACTGCCTCAATTGGT CACTGGGGAGATGAAGAATGGGAGAATCGTTCTCAGAGCAACGAATCATCCATGTCAGGCTGGAGAGGTG GCCCCAAGAAACCCAGGCCCCCAGGACAGCGTGAATCCAACCACTACATCAGCAAGTTGAAACGACTGAT GGATTATGGCTACCCCAAGGAAGTAGCTGAGGTCGCATTGCGCAAACACAACTTTCATTTCGAGACGGCT CTGACTGAGCTTCGTCAGATTTCAGACATGATGGATCAGAGCAAGATGCCGCCAGGGGATGCTGATGATC CTGTCCGACAGATGGCCCGTACCATGAACAACATGGGTATTGGTGACAGTCCAATGTCAACTGGCAGCGA CCTGACTAATGCTAACATGCTGCTCAACAACAGCATGCCTGGATCTCTTCCCCTTGGAGGAAAGCCAAGC AACATGATGGGCACACCAGGGTTCATGCCGTCAGGTAGCGTGGGGCAGAGGTTCTCCAGTCAGCAACAGA ACCTGCCGATGGGTCAACAGCCGGGTGGTCTCAACCAACAACCCCCGAGAGGACCCTTCAACAATCAGCA GCAGATGATGCAACAACAGCAACATCAGCAGCTGTTCCAGGTCCTGCTCCAGCTGGCTGTACAGAGTGGC ATTGTCAACCAGAGCCTTCTTCAGCAGCAGGTTACACCTACACAGATCATGAGCATCGTTCAGCGCTACC CACAGCTTTTGGCCCAAGCCCAAGCTCAGCAGGGTAATCTTCCTCCAGTTGGCGGGGCGAACAGTGTCGG GAAAGGCATGAGTTCTGCACCTAACCGTTCGCAGCAGGAGTTGATGGCACGCTTTGTTCAACAGCAGTTG CTGCAAGGACAGCGGCCTCCAGTGTCTCGTCAGCCATTCCCAACTCGCCCCAAGGTGCGAAGCGATTCTG AGATGTATTCCAACACCACCACCTCCTCAGATCTCCTGGGAAATATCAGCACCATGAATCCTGACATCAA TATGCGTGAGCCACTCCAGCAGTCCCGCCTTCAGCATCTGTTCGGCAAGCCTGGAGCAAAGAACTTCCCG CGGTCTAACCGGTCAGAGTCTGTCCCTGGCCTCCCTGACAACAATCGCAGAGGTTCTAACTGGTCTCGCA GCAACTCGCCAACCCCGTCGGATAGTTTGCCCAATAGTGCTGACTCTGCCTTCTCCGATGGAACTGGATG GAACTTTCCTCAGCCTGACAACATCAGCTCCATCAATGACGATGTTCCAGAGTTCATCCCAGGCGTTCCT TGGAACCCACAACCAAGCCTTGATGTTTCCAATGACCCATCAGCTACTCCAGGAATGTACGCCCCTTCCA AGCCCTCTGGACGGGACATTCAGCAGAAGGATGACATATCTGGTATCCTGACACGCCCCATGAAACCCCA GGCCCCATGGTCGTCCAACCAGCCTGGAGGGGGACGCAAGCCCAGCTGGAACTACGAAGGCGGTAGCGGC CAGAACTTTGGCGGAAGTGGAGGGGGAAATGCAGGTTCTCGCTCCAACCAGCTGTGGAATAGTGCCCCAG GAAACCAGCCACGTGCTACCAGACCACCTCCAGGACTGGGTGAGCATCCTCATAGTAATTCCTGGAGAGG AAGTTGGGATGCTCCCTCTGGTAAGAACCCACTAATGCAGGGGCATGCAGTAATGCACAGATCATCCTGG TCTTCTGGAAATGGTATGTCTGGCGGAAACTCAATCCTCATCTCTGGCGTCACATCTGATGTGAATGTGA CTGCCCTGAGGAACATCTGTGGACAACAGGGCCAGGTGGATCAGTTCCAGGAGAACCGTGCCCAAGGTTC CGTCATGGTGGCCTACCGCTTCCCCGACGATGCGGCCAAGGCCCTCGCCATCATCTCCTCCGCCTTCCCC AACATCATCGCAGAGCTGGTCTCCCCCAGCGATGCATTCTCCACCCCTGCCTCCTCCTCCTCCTCCGGCT GGCCCCAGGGAGGAGGCAGCAGCGGCGGGAGCAAGTTTGGTAACAGCGTTCTCCCCAGCACCTCCAGTGC CTCTGGCGCCGGCAAGGACGATAGCGGCGGCAGCAAACAAAACTGGAGCGCCGGACTCCCAGGCATGCCA GGAAGCCAGCTGTGGTCTCCAGGCCCCGGTGGATCCATGGGCTGGAGCCCCATGGACGGAGACTCCTCTA GTGCCTCCAACTTCAGCTTCTTGCCTGGAGACCTCCTTGGAGAAGGCACCAACTAAGATGAAGACGTGAT CATCGCCAATACCCTTTATGGTGCTACGAAAAAGAAAAAAGAAAAAAAGAAAAAGCCACTCAATACCACT TGATTATTATACCATGTATATGTATATCTTTGTGTATATCTCAAGCACTTGACAATTCAGCCATGATGTA TGTATCAATATTAATCTATGTATCGTCTTACATACAAAGGCATGTGTATTGTCGTCACCATCCATCCGTT GCATGCATAAGTAACTTATGCAATTTTATCTTAATGTACTTTGTAAGTAAATTGTGCTCGGGACACTACT GTAGTCAGTGAAATACCTTGTTTTTCATATGAATAACTTTGTACTTGTGTCAATAGACAGTTCTCTTGTA TTGCTTTGGTTGAATATCAACCAGGCTAACTATTCATCGATGTCCTTGGAAAGTTTTCTCTCCTTTTTTT CTTCTCCAAAAAACTGCTAACAAGACTTCCAGAATGACAGATGTGTGCATTCGGTGGTGGGGTTTTGGAT CAAAACTTTATACTGATTCAACAGCAACTTTTAGCTGCCAAAGAAATTAAAGTAAGATTTGACAATAATA ATGTATATATTTATATTTTTCCCTGTTGTTGATGAACTGTTTTTTTTGTGAGGAGTGTTTTTTCGCTGTG CGAAACTTAGCCAAGCTCGTGGCTGTCACTTTTTTTGAGAGACATCCCCAAAGTCAGAACTACCTGGAAG CCATAATCGCAGCTCATTGACAGATTGATCTTGCGTACGACAGTACATGTGCAATGAAATAAATGTGATT CGTTTAAAGATGTATGGAGACACTTTCTCTCTCTCAGATGGAACAGCCTACTGCAAGGAGTCTACAAGCA CTAGTTTGAAGAAACAATGATTATGGATTGTTATGGTTCAAAGCAAAGCAAAGCACAAGACAATGAACAA AGTCGAGCCAAGTATACAGGGCATGCACATACACTATAAACAATTGCTACGCATCCATATCTGTGTGCTC CAGTGCGATAATAGCTGAACTAGCTGAAATGTGACTCACGGATTAAGAAAGGAAAGACGGTGCCCTACAA ATGAAACATGAAAACTTTTGTGCTATTTGCAGAGATACAAGAAGAGGGTCCTTGGCTCCGTACGGAAAGA AAAGCATGATGACACACGGCTGTGCAGAGTGATAAAAAGACATCTAACCAGGAAAGAAAGTACTCCAACT TGTCTTTGCGACAAGCGATACAGATGAAAAGGATTGTTGGATGTGATGCGGAACGCAAACATGTTCTTGT GACTTAACATAAAGGCGGATGGTGCAACCTACACTGTATTCCAAAGCATTTTTCTTTTAATGTATATTCT GTGTATCGATGACTGATGCAACTGTATGTGTCGTTTTATGAAGATGTAATAAATAGAGCAGCGTACGTCA GCATGTCACATAAAAAACAAACTTGGCTCATCCAAGAGACGACATGGTCGCAAAGTCTTCACTACCAATG CGATTCTTAAGTGCAATTTTTAATTTGGTTTTCCTTGTGCATAACAATGGGGCTTTGTCGCGTAGCCACG CCAAGGCAAACTAGCGTGTGGATGGATGGCATTAACGGAAGAAAACGAAACTAAAACAACCGATAAGTTC AGTCTGCTTCGAATTCCAGGGATGCTCCGCCTTTGACGCGGGATTGGAGACATGGAACCTGGCGAGTATT TTGTATGGGATGGAGACTATTACGGAGTACATTTATTGTGTAATAGAGTCGTGGCTGAACTGTTAACTGA AATTGATCTCCACCACCAGCTGTCAACTTAATGAGAAACTGAGTTGTCTTTCACTCGGATTAACAGTGTA AAGCGTCATTTTGTCTATTTTTGAATACTGCACTTTGTTTTCTGGTCTCACGAGGCATTTTTCCGCACGA TTAAGAGAGAGAAAAGTATACGTAGGATTATTTACGAAAGTTTTTTCCTGTAGAGGAGAGCATTAAAGAG ACTTTGTTTGGTGGATAAGTAATAAGATAACCATGGTACTCGTTCATGATTGCATTATTATTCTGTAGCT TTATAACTGTTGTCGTCCGTAGCTGTCACTGTGTTTCATTAGCATTTTACAATGTCCAATTGCAAAGCTG CAAATATTTGGGAACAGTATTTGACAGTGCCTACCAATTCAGTCACTCCATTCTGTGAAATTCAAGAGGT ATAATGTTCAAAACAAAAACGTTGAAAAAAGTACAAAAAATTTGAAAATTTTAGAACACTATTATGCAAG TAAGGTATATGTGAGTTTCATTTTGTTAAGTCAGCCCTTATTTTGACTATTGATGTGTAATGGCCATAAC ATTGCATTGTATTGATGATCAAATCTTAATTCATTGTTTGTACACTACTTTTATAAAAATTTTGCATAGG AGATCATTCTGATACGTACATTTATAAATATGTATTTGGCTATAAATATAGAAATATATATATTTCATGT TATATATGTATGTTGATTGTTTATCCATACAAGACATTTTGTTTTGTCAGCACTGATATATTTGTACCTT CGAAATGCTTTTTTTATTTAAATGATTTGCAAACGTTAGGAGAAAGAATGATGGTGATGTTGAAGGAAAA AAAAGAAATAACTTCTGAAATGATGAGAAGAGTAGGTTTTAGTGTCGGTAGGGATTGTATTCAGTTATTT TCAGTGTTTGTCTTTTAGTTAAGTTATCCCCTTATCAGGGAAAGCCACTTATTCCAAAACCAAGTGCAGC TGAGGTTTATGTCTAGACTTTATCTCTTTGTTTTTCTTCTTTCTCCAGAAAAATAATTCCCTTGTGCCGG CTATTTTTTTGTTTTGTTCCTACATGTGACATAAAGAACAAAATAACCCCTAGTTTCAACGTCCTCCACG TAAGAAATTGAATGTGTTCAACCATTACCACTATGCGAAGAATATCACATGTGTATTGTATGACGTACTA GCACTCGACAGCCACTCTTTTGACGTGAATGATGATCAGATAGTTTTGAATGCAGTCTTGCATTACTGTT TTGATTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds