Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030977955.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100892326 (LOC100892326), transcript variant X2, mRNA CCATGGTCGCTGATGATCACGATCAGTTGTCGCAACGACGCGTACGGTTAAGTGCAGTATTTCATCGATC TACAATCGGGCTATAGCTCACATGCAGGAAATAGAAGGTGAACACTGGAATATAGGTAACGAAAATGGAA CGAGTCTTCTGAGCTGTAGAGTAGTGGGCGTACCTTGTGTAGTTGTAGGGGGAATTCCAACTTGGGGAGT ACGTCGTAACCACCATGTATGTACCACACGCCTTGGCTTGGGGAATTCCAACTCGTGCCCTTTGTCGAAT TGATACGGTTCATCCTTTATTGAAGAATTAGGAATTCTGGAGATCCTGTGATAAAGAAGCTACAGCAAAA CCATGGAGCCTCATAGAAAAGAACCAAGTTATAGCACGCCACTTCTTTCTCCGCTGATAAGGGGAGTCAA AAACTCTTCTCCTGTTGTAGATGTGAAAATTTTGGACCTTCTTCACTACCAACTGGAGGAGGAGATTAAA ACTTCATGTCTGGACAGGAGGATTAGAGTTTCAATAGTGATATTTCAGTCTTTGTGTTCGCGAATCATCT CATTGAAGTGGGTTGTTGAAACAAGCTGGAGGTTGGTTTATGTTTGCTTGGATTTCCCTGATATCTTGAG ACTCAATGAAGAGGCATGCAGAGATATAACACAAATGGTTGCGCTAAGAGATGCTATTGGCCTGCTATTC AGATATGGTGTGAACCTGTTGAAACCAGATGTATCTACAAGTACAGCCTGGAGAGTCATCAGTTTTGACA ATTCAATGTATAGCTCTAAAGTTAACATTTTGAAGGGTCACAAACAAATACTCTATCTGTACGGTTATAC CAAAGAATTGAGTTATGGATTGAGCTACCCAGATGCCTTACATACTCCAAACATTGTTACTGTGGCTAAG GTCGCTGCAGACTTGGCTATTGCTTACTTTGAAATTGACATGTACATCTCAAGCTCCCATCCACATGCTG AAAGGATTGGGACAATGATTCAGAGTGCAACGAATAGGACACAAACTTCTAAGAACCCCGATAAACATAC TGTCCATGTCTCTCCAAGTTATAGAAGTCACAGCTCAGAAAGTTCAGTTTTAGAAGAGAAGGAGAAGGAG TCCATGTTACATGATGTTAGAAATGAAGACAATCCCCTTCTTAAAAGTAGTTATCAGACGCACGAACCAG AGGGGTTCCCAAAGGTTTTTACTGCACATATGGGGAAGGAGAAGCAGTCAAATATTGAACAGAAACAAGC TGGACAAATCAACATGCAGTCATCATCACAATCATCGCCATTATATAACCAAGTGAGAGTCAAGTTGACA AAATGTGGGATCTGCAAGCAGAACACAGCAAATGTGAGATGCACCATGTGCTCCCAGCCCCGCTGTAAAC GCTGTGATGAGCTCTGGCACAAGCATCCTCAGCGACAGGGTCACACACGTCACCAGATCATTCCAGAGGA ACTTGAGGCTCCAAGAGTGCTGCAGCCTGATGCAGACATCAGTCAAAGGCATGCTGGTGCACTTGTGCTA CCACCAGTCATAGATAAGGCAACCATCAGGGAGACTCGTCTGCCAGGAGGTATTTCTGCAAGGACGGATG AACTGTCTACCATTCCAGAGGCATCTTCGTCCAAGGAAATGACTGTTTTGGCTGGAACTAACGGTCCATT AGACTCGCCTCAACTCCAGCAAGGTCTTGAGCTCATGGCGGAAGCCCCTTCTGTGAATTGTGACTTCTGC AGTACAAAGCCAGGCAAGAAGTTTTGCGCATCATGTGAGGAGACATACTGCCTAGAATGCGATGATAAGC GGCACAGCAATCAACGAAGAAAGAGCCACAAGAGACAGGATGTGACACAGACTCCTCAACCAGGAAGTTC AAGCGACATTCAGACCATGTTGCCAGACCAAGACCCTTTTCAGCTGCCCAAAAATGTGCTCACCATCTCT TCCACTGAACCAGAAATACAGGAACTTGATTCATTAGTCTCAGACTACTACTCGGTCCCTGGGGAACCTG CTGAACCTGGTGATGCATCATACTTCACCAGTGAGGAAGATCTTGATGTCAGAGCACCTCCGACTGATAG TTATCGTCAACCAATGCTGGGTGCAGGCGTACCAACCAAACAAGGACACAAATCACCCGACTCTGAGAAA TCACCCTATGTAACTCCACAGGACATCACTGTCGGTGGAACAAGCAAAGAAGCTGATTTCCAGACTGAAC TTGGCATCATCACCGCTGAAGACATTGCTACCTTAGAGAAGTTATTTAATGTACGAGGTCTGAGAGAAAA TGAAATGGATCCAATTAAGAGAGCAGAGCTGATGCGAGAAGAACAGAAACTCACAATGATGCATGAAGAA TTGGAGAGGAAGTTGATAGTACTTCAAGGTCAGTCATCAGGCACTCAACGGGCTAGTCCACAGAAGGTTC CAACGGGTGCTGTAATTGCTGCAGGAGCTGCAATGACCATACCCCAAGGCAAGGTGATTCCTTCTGTGAC TTCAGCAGGAAACATGGCTTCATCCACCAGTCCCCGAGAGATCAGGCAGCAGATCCCTGATCCTGCCAAG GCACCCAAACAGAAATCCAGAGACATTCTCCAGGATGACCAAGAAGGATGGACCTGTCAACACTGCACGT TCCTCAACACCAACATGGAATCAAACGTCTGCTCAATGTGCGACAAGACGTCCTTCCTAAAGGCCAAGAT CCAGCCAACAGTGAGATCGAAGGAAACAAAACCTGAACAGTCAAATTCTAAGGTGGAGATCCAACCTCTC ACTAAAGTAGAAAGGAGGAAGAAGAATGCAGAGTATTATCAGCAGCTAGAGGCAGAGATGCTGGCTGAGA AACAGCATGCCAAAGAGGAATATTCCAGAAATCCTGGAAGCCTCCAGGCTGACCCTACTGGTCAGGAACC AAAGAAAGCTGTAGTGAAGTCCAGACCACTCTCTGATACTGATCTCTTGGAACTTTCTCAAGCAATTTCG AGTACCGGTAGCTTCACCAAGCTTGGATTTGAACTTGGATTTTCTCATCATGAGCTGAATCGACTAAAAG TGAGGGATCCAACAGGAACCATCGGGGCAAGCACCTATGAAATGCTGAAGATGTGGCAAGGTGATGTCAG AGGACACGAGCAGAGACCAAAGCTGAAGCAGGCCTTGGTGAATGCAGATCTACGTGCTTATGTTGATTTT TTTGATGAAAACAGGTTTACCAAAGGACCAGATGAACCCAGGGTGTCTTCAACGAGAACAAAGGCAGTAC GTGACGGTATGACTCCACCTAGCATTATGTCCACACCCAGTGGTATGACAACATCTGGTGAGGTCTCAGA TGAAGACCTTTGGCTACTCTCAAGGGAGATCCCAGTCGACAAGATACATGACCTTGGGTTCGAACTTCGA TTCCCATATTCAAAAGTACAACACCTCTTGCACATGCACAGGATGGATGCACAGGATGCCATATTGAACA TGCTGCAGGAGTGGAAAAGTCGGACAACACGTGCTGATCAACGCAGAGAGTTGAACAACATACTGAAAGA TTCCAGTTTAGGGGGACTGACTGTAACTGAGGCTGTTTCAAAACCAAACATCGAAGCCAGGGAACCCAGA GGCATCACTGATATGGAGTTATACGAGTTGGCAGACTCTCTCAATGCTTCCAACATCACACACCTTGGGT TGTATCTAGGGTTTGGTATGGCAGCGATAACCCGCTACCAGCATGAAGCTGCCCTGGGGTCACCCAGGGA AGGAACCACAAGGTTGCTTATGGACTGGAGAAACCATAAACCTGAGATCGACCAGAGAGAGTTTCTTGCA AATGTTTTGTATCAGATCGGGTGTGAGCGCCTTGGAGAGAAGATCAAGAAGTATTCAGGCTTTACACGGC ATCATGATACCTTTGAGGAGAGTCTGCTGCAGCAGCAGCTGTCCCATGCCACAAGCTTTGGGGACCTCTC GTACTTGAAGGGCGAGGAAAAGACGAAATATGAAGAGATGCGCACGGCATCGTTAAACCTCATCGCCGAG CTAAGGGAGGCTGAATCTCAAGGCATACCCCCGGGACGTATACAGTGCGCCCTCTACATCATGGAGGAGA CAGGGGATGACCTCACTGACCCTATAGCATGGATCGCTGACAACTGGTCAGATGTTGTTCAGGATCTTGC GACTAAGGCCACCCAGGAGCTCAGGGAAAATCTTGAAGTTGATGTAGACACCAAAATAATGGAGCTTGTC CAGTTGAGTGAGGAATCAGCGGAGAAGTGCCTTGAGGAATGCTCCGGAAACACGCAGGAAGCCATCAAGG AGTGTACTCAGAGGATACAAGAAAAGATCTTAGAAATCCAAGAGGTCGGTAGCTACTCCGTGGATGACAT TGTTGCCATTTTGAAGCAGGATGATGTGAGGGGGGATCCTGAGAAGGCACTAGACGCCCTCCAGGTGAAG GCTATGGCTGAGTATGTGGACAGGGTCTGGACACCAACACATGATGATGACAATGAGTACTTCCAAGAGG CCATCAAAAATGATGATCGCTCTATCAGGATGTTAATGGTTGAGTATAACATGCGCAGCTGGGGCCGTGC ACAGACAGCCGCCAAGCTAATCATACGCAAGGAGTTTCTAGTGGACGATGTTGTGACAGCTGCGGAGGAA TGCGGAGATCTGCGACGTTCCGAAGTCTTCTTGAAGCAAACGTGCTCAGTCTGTTATATTGATCTACCAA GAAACAAGCTGATGTCATTGATCAATTGCCAGTGCATGATGTGTCGTGAATGCGTCATCGAGCATTTCGA GATCATTGCCAAGGACAAGAGCATCATGAAAGGCAAATGTCCGCATTGTGATCAGCCTGACCTGGATGAT CCTGCCGTGGCAGCAGACTATTTTGCATTCCTGGATATCCTTCTGCGTGACATGCTGAGCCCTGATGTGT ATGAGCTGTTTCAGAGGAAGCTCCGGGATTGGAACTTGATGCAGGATAAGAATTTCTGCTGGTGTGCACA TTGCAATTCTGGCTTCATCAACGGAGCACCAGACAGGCGCAAGATGCGTTGTCCCGAGTGCAACAAGCTG ACGTGCTTCCATTGTAAGAAGCAATGGATGGACCAACACGAGGGTATCAGCTGCGAGGCGTTCCAGCAGT GGAAAGAGAACAATGACCCTGATCTACAAGCCCAGGGTCTGGCTGCCCATCTCAATGAAAACGGCATTGA GTGTCCTCGCTGTAAGATGAGGTTTGAGTTGGCCAAAGGTGGATGTATGCATTTCAAATGTCCTCAGTGT ACTTTTGAATTCTGCTGCGGATGCAGTCAACCAATCAAAAGAGGAGATGCTTGTAACAAGTTTGGTTCCT GCCTTCGTAAGGGTCTCCATGCCCACCATCCTAGGGACTGTCTCTTTTATCTCCGGGATGAGGACATCAA TTTCCTCCAAAAACTTCTCGATGATGCAGACGTGGAGTACAACAAGGAGCCTCCAGAAGGAGCCGAGGAG AACGAGGAGGGGGTATGTGGGGTCAAGGAGCAGAAGGAGGGGCCCTTTGGCTTGGAGGATGATAAGTGCG GCAGGAAAGTGACCCATGGAAATGCCGGACTCTGCAGGCTACACTACATTGAGTACCTAGTGGGTTTGAT CAACGTTAAGAACATTGACCCAGCTAAGAGTTTCCCCATCACACAGCTGGATGCTATATTGAAGCGTGAA GAGATCGCGGTTCCAGACAGACGGCCAGGTGAAGCGGATCCCGATTACAGGAGGCGCCTCCTTCAGAATG TGCAAACTCAACTTCCTCTTAAAAAGGCTTCAAAAGACAAAGTGAGGTGAAAGGAAAGTGCAACTAAATT CTGCAGTGAAGAAAAATAGATGCAATAAAGGAGAAGAGAAGGCTGCATGCATAATTGGAAGGAAAAAAGG GGAACTTGCTTCCAAAATAGAAGTTAAAAGGGGAGAAGAGAAGATAGAAGGAGGAAAAGAAATAATGCAT CCAGAGATAAAGCTAGAGGGAGGAAAAAAGATCCATGGAAGGAATGCTGGAAGATTGCTGGAGGTTTGGA GAGTTCAGCAATGCTGAGGAGAGGAGGAAACGCTCATGGATGGGTGGAGGAAGCTAGTAGAGGATGGTGG AGATGAGGAAGATTCAGACTGGAAGAAATGAAGGAGATTCAGACTGGAAGAAAAGAAGGAGATTCAGACT GAAAGAAAAGAAGGAGATTCGGACTGGAAGAAAAGAAGGAGATTCGGACTGGAAGAAATGAAGGAGATTC GGACTGGAAGAAAAGAAGGAGATTCAGACTGGAAGAAAAGAAGGAGATTCGGACTGGAAGAAAAGAAGGA GATTCGGACTGGAAGAAATGAAGGAGATTCGGACTGGAAGAAAAGAAGGAGATTCGGACTGGAAGAAATG AAGTAAATATGGACTGGAAGAAAAGAAGGAGATTCGGACTGGAAGAAAAGAAGGAGATTCGGACTGGAAG AAAAGAAGAAGATTTGGACTGGAAGAAATGAAGGAGATTCGGACTGGAAGAAATGAAGGAGATTCGGACT GGAAGAAAAGAAGGAGATTCGTGGGAAGAGGATGGAATGTTCTAGATGTTGTGGAGGTGAGGATGATAGG GAGGGTACCAGGGATAAGGAGAAGAAGGGGATTATCAGAGGATGCACCGTGATGGGATCTTCACTAGAAA GGCACTGAATGTACCAGATGTGATGGAGCCTGAGAGCACAAGGAGGAGTGTTGCGAGGGGCTGGAGGAGA GGAACCAGAAGACGCAGGATAATGAGGAAAGTAAGGAGAATGATGTTGAGGGGATGAGCTAGAGAAGGAG TGTTATGAGGGGCTGGAGGAGAGGGTGGAGGATAACAAGGTTCTGGGATGGATCTGGAGAAAGATGAAGT GGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds