Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030977958.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100892326 (LOC100892326), transcript variant X3, mRNA GTGCCATGGTCGCTGATGATCACGATCAGTTGTCGCAACGACGCGTACGGTTAAGTGCAGTATTTCATCG ATCTACAATCGGGCTATAGCTCACATGCAGGAAATAGAAGGTGAACACTGGAATATAGGTTCATCCTTTA TTGAAGAATTAGGAATTCTGGAGATCCTGTGATAAAGAAGCTACAGCAAAACCATGGAGCCTCATAGAAA AGAACCAAGTTATAGCACGCCACTTCTTTCTCCGCTGATAAGGGGAGTCAAAAACTCTTCTCCTGTTGTA GATGTGAAAATTTTGGACCTTCTTCACTACCAACTGGAGGAGGAGATTAAAACTTCATGTCTGGACAGGA GGATTAGAGTTTCAATAGTGATATTTCAGTCTTTGTGTTCGCGAATCATCTCATTGAAGTGGGTTGTTGA AACAAGCTGGAGGTTGGTTTATGTTTGCTTGGATTTCCCTGATATCTTGAGACTCAATGAAGAGGCATGC AGAGATATAACACAAATGGTTGCGCTAAGAGATGCTATTGGCCTGCTATTCAGATATGGTGTGAACCTGT TGAAACCAGATGTATCTACAAGTACAGCCTGGAGAGTCATCAGTTTTGACAATTCAATGTATAGCTCTAA AGTTAACATTTTGAAGGGTCACAAACAAATACTCTATCTGTACGGTTATACCAAAGAATTGAGTTATGGA TTGAGCTACCCAGATGCCTTACATACTCCAAACATTGTTACTGTGGCTAAGGTCGCTGCAGACTTGGCTA TTGCTTACTTTGAAATTGACATGTACATCTCAAGCTCCCATCCACATGCTGAAAGGATTGGGACAATGAT TCAGAGTGCAACGAATAGGACACAAACTTCTAAGAACCCCGATAAACATACTGTCCATGTCTCTCCAAGT TATAGAAGTCACAGCTCAGAAAGTTCAGTTTTAGAAGAGAAGGAGAAGGAGTCCATGTTACATGATGTTA GAAATGAAGACAATCCCCTTCTTAAAAGTAGTTATCAGACGCACGAACCAGAGGGGTTCCCAAAGGTTTT TACTGCACATATGGGGAAGGAGAAGCAGTCAAATATTGAACAGAAACAAGCTGGACAAATCAACATGCAG TCATCATCACAATCATCGCCATTATATAACCAAGTGAGAGTCAAGTTGACAAAATGTGGGATCTGCAAGC AGAACACAGCAAATGTGAGATGCACCATGTGCTCCCAGCCCCGCTGTAAACGCTGTGATGAGCTCTGGCA CAAGCATCCTCAGCGACAGGGTCACACACGTCACCAGATCATTCCAGAGGAACTTGAGGCTCCAAGAGTG CTGCAGCCTGATGCAGACATCAGTCAAAGGCATGCTGGTGCACTTGTGCTACCACCAGTCATAGATAAGG CAACCATCAGGGAGACTCGTCTGCCAGGAGGTATTTCTGCAAGGACGGATGAACTGTCTACCATTCCAGA GGCATCTTCGTCCAAGGAAATGACTGTTTTGGCTGGAACTAACGGTCCATTAGACTCGCCTCAACTCCAG CAAGGTCTTGAGCTCATGGCGGAAGCCCCTTCTGTGAATTGTGACTTCTGCAGTACAAAGCCAGGCAAGA AGTTTTGCGCATCATGTGAGGAGACATACTGCCTAGAATGCGATGATAAGCGGCACAGCAATCAACGAAG AAAGAGCCACAAGAGACAGGATGTGACACAGACTCCTCAACCAGGAAGTTCAAGCGACATTCAGACCATG TTGCCAGACCAAGACCCTTTTCAGCTGCCCAAAAATGTGGAACTTGATTCATTAGTCTCAGACTACTACT CGGTCCCTGGGGAACCTGCTGAACCTGGTGATGCATCATACTTCACCAGTGAGGAAGATCTTGATGTCAG AGCACCTCCGACTGATAGTTATCGTCAACCAATGCTGGGTGCAGGCGTACCAACCAAACAAGGACACAAA TCACCCGACTCTGAGAAATCACCCTATGTAACTCCACAGGACATCACTGTCGGTGGAACAAGCAAAGAAG CTGATTTCCAGACTGAACTTGGCATCATCACCGCTGAAGACATTGCTACCTTAGAGAAGTTATTTAATGT ACGAGGTCTGAGAGAAAATGAAATGGATCCAATTAAGAGAGCAGAGCTGATGCGAGAAGAACAGAAACTC ACAATGATGCATGAAGAATTGGAGAGGAAGTTGATAGTACTTCAAGGTCAGTCATCAGGCACTCAACGGG CTAGTCCACAGAAGGTTCCAACGGGTGCTGTAATTGCTGCAGGAGCTGCAATGACCATACCCCAAGGCAA GGTGATTCCTTCTGTGACTTCAGCAGGAAACATGGCTTCATCCACCAGTCCCCGAGAGATCAGGCAGCAG ATCCCTGATCCTGCCAAGGCACCCAAACAGAAATCCAGAGACATTCTCCAGGATGACCAAGAAGGATGGA CCTGTCAACACTGCACGTTCCTCAACACCAACATGGAATCAAACGTCTGCTCAATGTGCGACAAGACGTC CTTCCTAAAGGCCAAGATCCAGCCAACAGTGAGATCGAAGGAAACAAAACCTGAACAGTCAAATTCTAAG GTGGAGATCCAACCTCTCACTAAAGTAGAAAGGAGGAAGAAGAATGCAGAGTATTATCAGCAGCTAGAGG CAGAGATGCTGGCTGAGAAACAGCATGCCAAAGAGGAATATTCCAGAAATCCTGGAAGCCTCCAGGCTGA CCCTACTGGTCAGGAACCAAAGAAAGCTGTAGTGAAGTCCAGACCACTCTCTGATACTGATCTCTTGGAA CTTTCTCAAGCAATTTCGAGTACCGGTAGCTTCACCAAGCTTGGATTTGAACTTGGATTTTCTCATCATG AGCTGAATCGACTAAAAGTGAGGGATCCAACAGGAACCATCGGGGCAAGCACCTATGAAATGCTGAAGAT GTGGCAAGGTGATGTCAGAGGACACGAGCAGAGACCAAAGCTGAAGCAGGCCTTGGTGAATGCAGATCTA CGTGCTTATGTTGATTTTTTTGATGAAAACAGGTTTACCAAAGGACCAGATGAACCCAGGGTGTCTTCAA CGAGAACAAAGGCAGTACGTGACGGTATGACTCCACCTAGCATTATGTCCACACCCAGTGGTATGACAAC ATCTGGTGAGGTCTCAGATGAAGACCTTTGGCTACTCTCAAGGGAGATCCCAGTCGACAAGATACATGAC CTTGGGTTCGAACTTCGATTCCCATATTCAAAAGTACAACACCTCTTGCACATGCACAGGATGGATGCAC AGGATGCCATATTGAACATGCTGCAGGAGTGGAAAAGTCGGACAACACGTGCTGATCAACGCAGAGAGTT GAACAACATACTGAAAGATTCCAGTTTAGGGGGACTGACTGTAACTGAGGCTGTTTCAAAACCAAACATC GAAGCCAGGGAACCCAGAGGCATCACTGATATGGAGTTATACGAGTTGGCAGACTCTCTCAATGCTTCCA ACATCACACACCTTGGGTTGTATCTAGGGTTTGGTATGGCAGCGATAACCCGCTACCAGCATGAAGCTGC CCTGGGGTCACCCAGGGAAGGAACCACAAGGTTGCTTATGGACTGGAGAAACCATAAACCTGAGATCGAC CAGAGAGAGTTTCTTGCAAATGTTTTGTATCAGATCGGGTGTGAGCGCCTTGGAGAGAAGATCAAGAAGT ATTCAGGCTTTACACGGCATCATGATACCTTTGAGGAGAGTCTGCTGCAGCAGCAGCTGTCCCATGCCAC AAGCTTTGGGGACCTCTCGTACTTGAAGGGCGAGGAAAAGACGAAATATGAAGAGATGCGCACGGCATCG TTAAACCTCATCGCCGAGCTAAGGGAGGCTGAATCTCAAGGCATACCCCCGGGACGTATACAGTGCGCCC TCTACATCATGGAGGAGACAGGGGATGACCTCACTGACCCTATAGCATGGATCGCTGACAACTGGTCAGA TGTTGTTCAGGATCTTGCGACTAAGGCCACCCAGGAGCTCAGGGAAAATCTTGAAGTTGATGTAGACACC AAAATAATGGAGCTTGTCCAGTTGAGTGAGGAATCAGCGGAGAAGTGCCTTGAGGAATGCTCCGGAAACA CGCAGGAAGCCATCAAGGAGTGTACTCAGAGGATACAAGAAAAGATCTTAGAAATCCAAGAGGTCGGTAG CTACTCCGTGGATGACATTGTTGCCATTTTGAAGCAGGATGATGTGAGGGGGGATCCTGAGAAGGCACTA GACGCCCTCCAGGTGAAGGCTATGGCTGAGTATGTGGACAGGGTCTGGACACCAACACATGATGATGACA ATGAGTACTTCCAAGAGGCCATCAAAAATGATGATCGCTCTATCAGGATGTTAATGGTTGAGTATAACAT GCGCAGCTGGGGCCGTGCACAGACAGCCGCCAAGCTAATCATACGCAAGGAGTTTCTAGTGGACGATGTT GTGACAGCTGCGGAGGAATGCGGAGATCTGCGACGTTCCGAAGTCTTCTTGAAGCAAACGTGCTCAGTCT GTTATATTGATCTACCAAGAAACAAGCTGATGTCATTGATCAATTGCCAGTGCATGATGTGTCGTGAATG CGTCATCGAGCATTTCGAGATCATTGCCAAGGACAAGAGCATCATGAAAGGCAAATGTCCGCATTGTGAT CAGCCTGACCTGGATGATCCTGCCGTGGCAGCAGACTATTTTGCATTCCTGGATATCCTTCTGCGTGACA TGCTGAGCCCTGATGTGTATGAGCTGTTTCAGAGGAAGCTCCGGGATTGGAACTTGATGCAGGATAAGAA TTTCTGCTGGTGTGCACATTGCAATTCTGGCTTCATCAACGGAGCACCAGACAGGCGCAAGATGCGTTGT CCCGAGTGCAACAAGCTGACGTGCTTCCATTGTAAGAAGCAATGGATGGACCAACACGAGGGTATCAGCT GCGAGGCGTTCCAGCAGTGGAAAGAGAACAATGACCCTGATCTACAAGCCCAGGGTCTGGCTGCCCATCT CAATGAAAACGGCATTGAGTGTCCTCGCTGTAAGATGAGGTTTGAGTTGGCCAAAGGTGGATGTATGCAT TTCAAATGTCCTCAGTGTACTTTTGAATTCTGCTGCGGATGCAGTCAACCAATCAAAAGAGGAGATGCTT GTAACAAGTTTGGTTCCTGCCTTCGTAAGGGTCTCCATGCCCACCATCCTAGGGACTGTCTCTTTTATCT CCGGGATGAGGACATCAATTTCCTCCAAAAACTTCTCGATGATGCAGACGTGGAGTACAACAAGGAGCCT CCAGAAGGAGCCGAGGAGAACGAGGAGGGGGTATGTGGGGTCAAGGAGCAGAAGGAGGGGCCCTTTGGCT TGGAGGATGATAAGTGCGGCAGGAAAGTGACCCATGGAAATGCCGGACTCTGCAGGCTACACTACATTGA GTACCTAGTGGGTTTGATCAACGTTAAGAACATTGACCCAGCTAAGAGTTTCCCCATCACACAGCTGGAT GCTATATTGAAGCGTGAAGAGATCGCGGTTCCAGACAGACGGCCAGGTGAAGCGGATCCCGATTACAGGA GGCGCCTCCTTCAGAATGTGCAAACTCAACTTCCTCTTAAAAAGGCTTCAAAAGACAAAGTGAGGTGAAA GGAAAGTGCAACTAAATTCTGCAGTGAAGAAAAATAGATGCAATAAAGGAGAAGAGAAGGCTGCATGCAT AATTGGAAGGAAAAAAGGGGAACTTGCTTCCAAAATAGAAGTTAAAAGGGGAGAAGAGAAGATAGAAGGA GGAAAAGAAATAATGCATCCAGAGATAAAGCTAGAGGGAGGAAAAAAGATCCATGGAAGGAATGCTGGAA GATTGCTGGAGGTTTGGAGAGTTCAGCAATGCTGAGGAGAGGAGGAAACGCTCATGGATGGGTGGAGGAA GCTAGTAGAGGATGGTGGAGATGAGGAAGATTCAGACTGGAAGAAATGAAGGAGATTCAGACTGGAAGAA AAGAAGGAGATTCAGACTGAAAGAAAAGAAGGAGATTCGGACTGGAAGAAAAGAAGGAGATTCGGACTGG AAGAAATGAAGGAGATTCGGACTGGAAGAAAAGAAGGAGATTCAGACTGGAAGAAAAGAAGGAGATTCGG ACTGGAAGAAAAGAAGGAGATTCGGACTGGAAGAAATGAAGGAGATTCGGACTGGAAGAAAAGAAGGAGA TTCGGACTGGAAGAAATGAAGTAAATATGGACTGGAAGAAAAGAAGGAGATTCGGACTGGAAGAAAAGAA GGAGATTCGGACTGGAAGAAAAGAAGAAGATTTGGACTGGAAGAAATGAAGGAGATTCGGACTGGAAGAA ATGAAGGAGATTCGGACTGGAAGAAAAGAAGGAGATTCGTGGGAAGAGGATGGAATGTTCTAGATGTTGT GGAGGTGAGGATGATAGGGAGGGTACCAGGGATAAGGAGAAGAAGGGGATTATCAGAGGATGCACCGTGA TGGGATCTTCACTAGAAAGGCACTGAATGTACCAGATGTGATGGAGCCTGAGAGCACAAGGAGGAGTGTT GCGAGGGGCTGGAGGAGAGGAACCAGAAGACGCAGGATAATGAGGAAAGTAAGGAGAATGATGTTGAGGG GATGAGCTAGAGAAGGAGTGTTATGAGGGGCTGGAGGAGAGGGTGGAGGATAACAAGGTTCTGGGATGGA TCTGGAGAAAGATGAAGTGGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
