Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038205954.1 PREDICTED: Patiria miniata serine/threonine-protein kinase 31-like (LOC119732437), transcript variant X2, mRNA GGGGGAATGCATGGGTGAATGTGAATTAAATGAATTTTTGAAGCAAGAGTTTTCTCGAGGCGGAAGTGTG CAGTCAGTGACAATAAAAGACGGAAAGAACAATGCTGCCAAATTTGGATTTGTGCGTTATTTGAAAGAGG AGGCACAGGATTCAGCAGTCACTCAGTTGAACGGGAAATACATCAAAGGAAATGTGGTGGTCGTCCAGAA GGCAAACTACAAGAAAAAGGGAAATACAGACACCAATGCACAGAATGGAGAGAACAGACGACAGCCGAGA GGTAACTATCAAGCTAATGGTGTCAGGCAGCAAGAACCAGTGGATACATCTCCAGAGTACATAGAGCAAG CCATCCTGATAACATACGTGATAGACGCATGCACTGTTTTTGGCCAGCTAGCCCACCAGGACATGGCAGA AGTCAGTGCCAAGCTAATGATGGAGATCAACCAGTACTGTCCCGTGGCGCAGCAGATAGGCCCAGAGCAG CCAGATCTTAACAAGGTGTATGGGGCTCTCTTCTCAGAGGATGGGATGTGGTATCGGTGCAAAGTCTCGC CGAATCTGGATGGGTCCGGTCAACAGGGCTCCAAGGTGCGTGTTCACTATCTTGACTATGGCAATGACGA GGTCGTTGATAGCAGCTCATTGGTAGAGCTGCCCATGTCGCTTGCCTCGCTACCCCCTCAAGCCCACATG CTAGTCTTCCGAGGGATCAAGCCCACAGCTCAGACTACAGAGGACAACAGAAAGGCTGTAGAGTTTCTGC AAGCCGCCACCGACGGCAAGTCCGTCATGGCCCGCCTCTACCGCCCTCTACAGACCACCTCCAGCAGCAC ACCAGTTGAGATTTACGACGGCCCCAGCGGGCTGAACGACGTCTTGATCCAGAAGGGATTTGTTGTCAGG GTCCTGCCCCCCTCCCCGAAGCCACTCCTGGGCAACAGCCCTGTCACCGCTAACGCATCTTCTCCAAATA CTTCCAGGGGGAGTCCCACCCCTGGAAATTCATCAGCCAAAAATGCAGGGAGGGGCTTGTTGGAGATGCC CCCTATGCAGCCCGACAAAAGGAGCCCTAACACGGCTAAATCCCCGAGCTACCAGAAGACTGGATCCGCA GGGGCGACCACAGACAGACAAGGTGAAGTACAGTCGTTGAAGAAGGAGATCACTCACCTCAAGACAGACA AGGCCGAGCTGGTCAAGAAATGCCACGAAAGTGTGCGCGAGATCACCAAGCTAGAGGGGGAGAAAAAGGA GCTGCAGACCGAGTACCAGTCAGTCAAGGAGGCAGCCACAAACACACTTTCATGCCTGAAGAAATTTGAA GACAAATACGAGACCGCAATGCAGACTAAAGCTGCGAGCTTGCTGGAAACACTTGCGGCCCTGAAGCAAA TAAGGAAACAAGTTGTGATTGACCCCGACATGCCGGACCCAGTAGAGAACGCCATCACGCTGTTGACCAA CTCCACCGACACATTTGTGAGTCTGACAGACGGAATCAATGAGGAAGCGGTGCAAGCAGCTCAGAGTGAG CTCAGTAAACACCAAGCCAAATTCTACCTACCAGAAGCAAAGGATCAGTTAGATGAGCTGATATCGTCCC GAGACCAAGCCCGACAGAGGACGTATGAGGCCATATCAACGTTCCTGGATGTGGTTAACAATCTGCCAAT GGCAGAAAGGAGAGCCAAGATCGAGAGTTCTTTGGGGGAGCTAGAGGAGACCTACCAGCACATGCTGGAT GGCCCCACAGACGAATCGCTGACAGGACGTGGGGACGGAGACCGGGATCAAATCAACATCTGCATCAATT ACAAAGAATGGAAGGAGAAGAAGAGTAAGCAGTTGAAGACGCTACGTGAGACGACTGATCAACTGGCTGG AGTCTGGCGTGAGACTGTTCGACAGAACATGCTTGATCCATTTGACATGACCTCTGACCTCGCCAACCCG TCTGTTCCCCCATTGGACGACCTGGCCCAGTGCCTCATCGTTGCCATGGAAACAGAGATTGCCATGACGG GCCAGGACTCTACAGACCTGAAGGTTGATCCGGCTTTACTGCAGAAAAAAAAGGAAGAGAAAGGTCAAGA GACTGCCATTCTCAACAACACAGTGCGCGTCGTCGTCAAGCAACTGGGCCTGGAACTAGACGCCATAGAC TACATCATCAGGCAGAAGGATTCTTACACGGCAGCTAGGAATGACTTTGAGAAGTGGCTTCAAGACAAGC CTGATGTGTCCTGCTTGCAGTCCATCCAGAAAGAGATCAAGACGTTGAAGTCTAAGCTGCGTCACAAGCT GGCTGATAAAGATGACTTGGAAGAGGATCCAGATTTAAACAGTGGCGGAGAACTCCAGAAAATTGAGAAA GAACTTACCCGCATCCGTGCTGACTTACAGAGGGCATACGCCGAAGAGGACATACTATTGGAGGAAGTTT CTGAGTTGAGTCGAGTCCATTTCCCCGAGCTTGTGCATCAGTATCCGACTTTTGACATCGAAAACTACCT GGATACGCTGGGTCTTGTGAAGCGAGGTCGTGACCTTCAACAGTTTGACCTCAAACCGTTGCCAGGGTGC AACAAGAAGATGATTCATCTGAGCCAGTGCAACGGCAAACCCATCCTCATTAAGTCCTTCTTCATTCCGG ATGATGCAGCACGGAAGGAGTTCCTCGTTCAAACCGTAAAAGCCATGACAACAGGCTGCGAGGGCCGACT GATCGCCAACGCCGTTTACTCGCTGTCCAATCTTGGGGAGGTCCACCTCCTGCTACCCTACATCGAGATG GGCTCACTGGAAGCGGCTGTGGCTAAAGAAGGTTGCTTTGCTGCCAAACCACTGACCGCCAAAGAGCTGC AGTCCATCTTCCGTGATGTCTTGACTGGTATTGACCAGTTGCAAGAGCTCAGTCAATCCACTGTCCACGG TGCCGTCCACCCAAGGAATGTCCTGCTGACCAGCCGCAGCTCGGCCGTGCTTGCCGAGTATGACATCACC AAAACACCCACTCAGCGTGCCCAGCAGGCCTATAAGAGTGATAACGGACTGACTTTCTCTCCGCCTGAAG TCACCAGCGGTCTGCCAGCGACACCTGCCTGGGATATGTACAGCTATGGCATGCTACTGCTCTGGGCCCA CTGCCCAGATGAACAGTTTTCAACCCTCCCAAATGGCACACCGGATCTGTCCTCGGCTGAAATGAACCAA CCTCTGAAGGAAATCATCTGCTCGCTCCTAAGCCACGCCCCTGAGAAACGCCCAAATCCAGAAGAGGTCA TGGCAATGGACTACTGTACCAAATCTTTGCCAACTGAGGATACTGATGAAGTGACGGAAGATGTTTTGGA AGAAGAGAATGGGAACAAGGTGGAAGTCGAATCGGGGGATCCTAGCATGGATGAGATACCCGAAGTTGAA GCTAGTGTTCCAAAAGACAGCAATGCCGTCACAAGTGACGGAGATCTCGTAGAGGACAAGGCGTCTCCTC TCGAAACACTCCAAGATGAAAAGATCGACACAGAAGAGTGTGGCAAGGAAACGAAGGGGGCGACACCTGA GGAGCGGGAAGAAGCGAAGACAGATGATGCAGGGAAGGTTGATGAAGACGAGAAAACTAGAGACGATGCA AAAACAACTCCACAAGCGAGTGCTCCATCCTCAGGATCCATCCTCCTGAAGAAGATGGTGGCTGCCATGG CAACCACTGGAGAGATGGGCAAAACAGACGCCGCAAAGACAGTGGATGGGTCGGAAATCTAACAGACGGA GATGTGGAAGGAAGGCCACAGAAGCATTAGTTCAAGAGCTTTCATTTTGTTGTATTCAAAATTGTTTGAG AAGAAAGCAAACAATTCTGCATTGGATAAAAGCCATGGCGATTCAAGGTTAAAAAAAAAGTGTTCCTAGA TCATTATTTTAGCGGTTTCCTCAGAACAGATGTTTGGAGATTATTGCTTTAAGTTTTATTTCAGAAATCA GCTTTTAAAACTTTTTCCCTGAAGTGTATGGGAGGACACAAGGGTAAGATTTACAAGTGTTATGAAGAAT GTATTGAATGATTCGAATGGCAAATGTGATTGCAATGTTTTGTCCAATTGAACTAAAAATTTCAAACCTT TAAAAGGAACATTTCTCAAAGCTAGACAAGCATGTGTTATTTGGGGAAAATGTGTTAAAATATCAAGGAA AACCAGTAAACGTGGGTACTTCGATAATTGTAATGGACTTTGTGCATGAACAGATGGTGCTTCATCCAAG CGACAAGGCAACTTAGGTTTTTGAATTTTTATGCCTCCAGTGCCCATGTAAGATATGTTACATTCCAGTT TTTTCGATATTTGTATTCGATTCGCCCCACTGCTTTACTCTAAAACTATTTTTCTTAAGAAAAAGCAAAC ATTCAAGTTCAAATTTGTAAAGTTTAAGATGCCTAACATTTTTTTCAGCAATTTCTTTCTTTATGACGTA GATGTTCCTTAAGGAAACTTTTCTTGTTTTACGCTGTTTACCCAAATGTATATTCACTACTAACTTTGTC TGTCTTTTTCTTGTACTTTTTTAGAATTTAGACTAAACCACAGACCAATTAGTTTGATCGTTTTGAGTCG TATAACCTTTCCTTTTTAAAATGTTAATTTTTTTTCTCAGGTTTCGAAAAATAACACAGGTTAGTGTTAT CTTAGGCTGAATGAAAAGAAAATAACGAGAAATACAAACTCTTTGTTTTCATTTTCATTCATTTTTCTTC TTTCTGAGATATTTATATAAAGTCGTCAGGATATGTCGGCAGAACACAAACATTTATTAGTTTTTTTCCG CCTAAGAAATTAATCAGTTACAACTTAACAAGTATCTCTAGGATTTTCCTGAGCAAAATTATGCATTGAA TACATCTCATTGGGTTAGTCAATTTAAATCTTTAATAGGCAGATCCGGCCGTGATTATTTTGATTTCAGG TCTTTAACTTTTCACAGATATGAAAAAAAGACACAAATATCATCATGCTACATGTTGAACACTTCTATTT TAGAAAGCTCCGTGTTATAAATTAACAGTTGCCAAAATATTTGCCAATGTGCTATGTTCTGTTAATATAA AAGTAACATTTACATATATACGAAAGAAAAACTAAAGTTCATTTAAGCAAAGTTATTTGTATTGTTCGTT TTGAATTCAACATTCACGGCAGTGTCGTAGGTGCAACAATGCTTCGTCCCCAAATGTGGCAGTCAAAGTT TATATCCTGAGTTTATCGAGCAACGTTTGCAAGAACTTGGTGGCATTAGCCGGTTTGAAACGCTCTGAGG CGATACAATATTGCCTGTCCACAGAAATGTACTGGTACAAAATCTACCATTACGGCAGGAGCAAAAAAAA AAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
