Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038207036.1 PREDICTED: Patiria miniata polypeptide N-acetylgalactosaminyltransferase 10-like (LOC119733633), mRNA GTGCAGCGCATGTTACTGTGCGTACTACTTTGTGCCTATCGTTTAGGAGGAGATATGAGACCCCTCCTCA ATCACAATGTAAAAAATTACCCGCAGGAAGTGGCTGCCACACAGAATATTAACTATGGCCGTGATCCCAC TGTAACGGTGCGTGTGAGTGACGTGACGATTATTCAAGGCAAAGCAGGGCAACACATGCTTGACGCTTCG TCTGCAGCTGTTTCATTGTAGTCCGGGAGTCTAGAGCGAGTCCACACACAAGCATGCACATGTGCTGATC TACGGACAAGTGAAACAGTGGAAGCGAACAACACATCACGGCACAACAGGAGCGCGTGCTGAGCATTCTG TGTTCTGCGCCACAGAGCTACTACACGTCGGAACCGATGAGGGCGGTAGATACTCAAGTGAAGATACCGC ATCCGCTTCCACAGAACTACTGCGCGCTTTTGGACATGTACTGTGGATGACTACCGCATGAGTGTGAGTG CAGATTTTAAACCCTTTCTTTTGTACCACCGAGCTACGCAGGGATGAAGAACTGAAGAGAACAGGCAATA CTAAACGTGCAAGCAAATTGAAGGTATCGTGTGCTCTACCACAGAACGACTAGTGCGCGCTTTTGTATGC TTTTGTACACTGTGGATATTACAATACCACTCGATTGGCGCGACAAATTGTCCTTACTGAACAGTGGATC TGATGGGTACAAATGCTGGGCAGAGGAGGATGAACTTGCCGGACTTGTCTTAAAACTTTGTGGAACTATT ATGACCGTCTCCTGCGTGTCTGTGTTGCATTGACTGGTTTCTGTGATTGGATCAACTGGTTCTTGCGGAC AAATTGTTTGAAATATTTTTATATATATAAATTCAGAAATTGTGCGAGCTGCACAAAAACTGCATTCTCT ACATACATGTACGTGCAGTTAAATGTTGTAGCATGGTCATCAATCGCTTAACGGAACAAGTAACGAAGTT GGAAAAATATTTCTGAAACTGCATCAGTACTACGAGATATACGTAAGACTAGGTTTTTAATGTTGACGTT AGGCCATTAATGTAAACTTGGTGACTCTATCTATCAGTCAGTCGGTCGGCGACTCAATCAGCCAGTGGAC AGTACATGTAGGTTGACCCGTTGGCGACAGAAAATAACCCAACAAATTTTCACCATGAGGTTTCATATAC GACGCATGCTGCAGTACCTGGCCTTCATCTTTCTACTGTTCTTTGTCGGTACCGTCCTCATCAAGAGGGG CACCGAGGACATTGAGTCGGACGGCGCCGGCGGCGGGAGGAGAATTCAGGGAGGCGGGGCGGGGGAAGAG GGGGTGTTAATAAGGAACAAGGACAACGCAGTACTGCCAAGAGTGCAGCTACCACAGTTTCAGGCACAAC ACAACCAAGCCCCGCCCCCTGTGGCTGCTGCAGGCGGCAACCAATTCAGGAATTTTGCTGTGGGAGAACA AGTACTAAGAAAGAAAGACTGGCACGACTACGCGAGGATAGAAGCTGAAAAATTAAGAACAGGTCCAGGC GAGCATGGTGCCGGCGTTGTACTCACAGAGGAACTCAAGAGAACGGCAGGTGCAGACACCAAAGCCAACG GCTTCAACGAGCGAGTCAGCGACATGATCTCATTAGACAGATCCATCAAAGACATCCGAAACCCAAGGTG TAAAGAGATTCAGTACTTGGAGAGGTTGCCCAACGCCAGCGTGGTCATTCCGTTCCACAACGAGGCCATG TCCACGCTCAAGCGCACCGTCCACAGCGTCTTCAACCAATCGCCGCCCGAGCTCATCCACGAGATTATCC TAGTGGACGACTTCAGCGATCGGAAATATTTAAAAGAGCCCCTGGAGGAGTACATGCGGCGATTCCCCAA AGTCAAGGTTCTGCGCATGCCACAGAGGGAGGGTCTAATCCGGACCAGACTACATGGCGGTCGCCAGGCC ACTGGGGAGGTCTTGATCTACCTGGACTCCCATTGCGAGGCTAATATCAACTGGCTGCCGCCATTATTGG AGCGCATCGCCTTGAACCGCAAGTGCATCGCCTGTCCCATGATTGACGTCATTGGCAATGAGGACTTCCA CTACGAGTCGCAGGCCGGGGACGTCATGCGGGGGGCCTTCGACTGGGAGCTTTACTACAAACGCATCCCC ATCAACGAGGCCGAGATGAAACGCCGGCAGTTTGACACCGACCCCATCAAGAGTCCCATCATGGCCGGCG GCCTCTTTGCCATCGACCGCCGCTACTTCTTCGACGAGCTCGGGGGTTACGACGAGGGTCTGGAAGTGTG GGGTGGGGAGCAGTACGACCTGTCCTTCAAGGTGTGGATGTGCGGTGGGGAGATGGAGGAGGTTCCCTGC TCCAGGGTGGGGCACGTCTATCGCAAGTTCATGTCCTACACGGTGCCTGGGGGTGGGGGAGTCATACACA AAAATCTGATGCGCGTGGTGGAGGTCTGGTTCGACGACTGGAAGAAACATTTTTACATGCACAAGCCCCA TCTGAAGGGTATGAACTACGGCGACATCAGCAAGCAACTAGCGTTGAAAGAACGGCTGCATTGCAAAAAC TTCACCTATTTCATGAACGTGATTGCGCCGGATATACTGCAGTACTACCCGCCGGTGGAGCCCGACCCGG GCGCCACGGGATTTGTGCAACATGAGGAAAGTGGGCTGTGTTTGACGTACATCCACGGACGGAAACTAGA GATCATTCTAGAGCCTTGCAAGCCAAGCAGGCAGAGGAAAGGAGGCAATCAGTACTTTACGTTAACGTGG CACGACGACCTACGATCCAGTGTGAACGAGAAGCAATGCGTGGACTATCCCAATCGGGTCGAGGGAGGGG AGCCCATCTTGTATCCTTGCCACGGCGGGAGGGGCAACCAACTCTGGCTTTACAATCCGACTTACAAACT CCTGTACCACCCTTCGTCCGAGCTGTGCCTTACCATACTTCCCTCTGTCGCCAAGGGCTCCGAGGGCAAG GCCGTAGCCATGGCGAAATGCAGCAAGACAAACACTGCCCTCAGCTGGAAATTTGAAAAGACTTTCAAAA AAGTTTTGACGCGGCTAAACCAGCAGTACCGCATCACGTTTAAGTAGCAAGATGCATTTTTTTCCCCTTT TGTAGAACTGCATTAACAGATAGTTCAAACTCGGCACGAATGCTAACTCGAAAAGTGAGTGTGAATTTTT GATGTCAAATATTTGCAAATAGTTATTTTTGACGTCAACTATTTGATGTCAAATATTTGGCAAAATGCAG CACATTAACAGGTGGTTCAAACTCAGCACAAATGCAAACACGAAAAGTGAATGTAAATTTTTGATGTCAA ATTTTTGCAAATAATTATTTTTGACGTCAAATATTTGATGTCAAATATTTGGCAAAATGCAGCACATTAA CAGGTGGTTCAAACTCAGCACAAACGCAAACACGAAAAATGAATGTGAATTTTTGATGTCAAGTTTTTGT AAGGAATTATTTTTGACATCAAATTTTTGACGTCAAAAATTTGGCAAAAATTTGCACTGCGATACACAAA AGTTGACATCAAATTGGTTTGGCATTCACATTTGCGTCATGCATGAACCTGGCCTTGAGGGGATGTATCG GCAAAAGTTGACATTTGTGGACACTGGAGGGCGCTGTTCACCTATTTTTCTGTCATTAAGTTTCCATCAA ATCGAATGGTTGACGTTCTTGTTCTTATATTTATGGATACGGGATGAGATGTATCTTTTGAAATTAGCGA GAATTGGAAGCTTTTTGTTACGATTTTTATTGTGATTTTGATTTTTGATTTTTTATTGTCTTTCGGAGTA GCCAAATCAGCATTTTGTTTGTTTCCTTTCAAGAATATACATTGTATCTATTATCAATTTTGACTGTTAA AAAAATCAAGGAGTCATTCGTGGCTCCAGATTTTTGCAAACGTCAAAACTTTTGGATTGCTTAATAGTTA TTTTTCACACGATTGTTTTCAATATCTGTGCATTTGAATCTGTTTTGTTCCAAAATTTGCACAATGAAAT TGTCTTAAATAACGCTCTAGCATTATTGATACAATAAGTTCCCAAAACATAAAATTAATTGACACCTATA AAACAAAAAACCTCCGCACATCTCTTAATAAAAAATGATATTAATTTTCTTAGTGCAATGAAGGCAATCA GAACAACTCTTTCATCAGAAAAAAATAATACAAAATATTCAATAAAATACACTTAAATTGTAAAAAAAAA AATTGTGCAAATCAGTATTTTTAGCATGTACAAACAACAAAGATCTATATATTTGATGAACGAATAAATC AAGAAATTTTACACCAAAATTATTCCTATTTCAAGTTGTCACATGCACACACAAAAATTAAGATTGAACT GAGATCTAAAATCCTTTAAATTATATTTTAAATACCATTCATAAAAAAAAAGTTTGCCCATTCCTATTGG TCGAGAGCATGTCACATGTGTGGTCTTAAACCGCCCTTTAAACACATTTTTTGTCTCAATGTAAGAAATG CAATCAGTACTAATAGTATGTATTAAAAGTGAATGAACAGAATTTCATGTATATAATAACATCTCTTCAT TGTATTTAAAAAAAAAAATCATATTTTTCTAGGGCGGGAATTTTAAAATCTGCACTTTAGTACTTCGAAG TCAGTGTTAGCTTAAACGATTACAAAATGCTCATGCTGCTTTGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds