Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT105939.1 TSA: Strongylocentrotus purpuratus WHL22.604953.1 mRNA sequence TTCAGGGCTAATCTGCTAGATTCTGTGATGTATAGGATGGGAATTCTTGCGGCACTTCGGTCAAAACAGA CAAAAGCCACTGTTGGTGTGATGATAACCGCTTCCCACAACCCAGAGGAGGATAATGGTGTGAAGCTAGT AGAGCCTATGGGAGAGATGCTGGTACCAAACTGGGAAGGTTATGCTTCTCGGATGGCAAATTCTAGTGAT GAGGACCTTGAGTGTACAGTGAAGACAGTGGTAAAAGAAGCACAGGTTGACATCTTAGCACCTGCTAATG TCTTTATAGCCAGAGATACAAGACCCAGCAGTGTAGTTCTTGCTCAGTCTCTAAAGGATGGGGTCACTGC CATGGAAGGTCAACTTACAGATTATGGATTGCTTTCAACACCACAGCTTCATTACATGGTAAGATGCTAC AACACTAAGCAAGCCTACGGACAGCATACAGAGCAAGGATATTACCAGAAACTGGCCCATGCATTCCACA GCCTTCACAAGCTGAATGATGCTGGAGGAGGAGACTACAGTAATCAGATTTTGCTGGATGGAGCTAATGG AGTTGGTGCTCTTAAAGTGATGCAATTTCTTAACCACCTAGAGACCTCTCTTCTTAACATCACTGTCTGT AATGATGGATCAAATGGAAAACTCAATGAGATGTGTGGAGCAGACTACGTGAAAATACAACAAAAACCAT CTTCAGGTATGCCAAGCAAGGTTGCAGTAAAGTGTGTATCATTTGATGGAGATGCAGATCGTATTGTTTA TTTTTACACAGATACAGATCAGCGCTTCCATCTTCTTGATGGTGACAAACTAGCAACATTGATTGCAGGT TATATTCAGGAATTACTTACACAGAGTGGGTCACAACTCAAAATGGGTCTAGTGCAGACTGCATATGCCA ATGGAAGTTCCACAAAATATGCCTCAGAAACTTTGAAAGTGCCTGTTGCTTGTGTAAGTACTGGTGTAAA GCACCTGCATCACAAAGCAGAGGATTTTGACATTGGAGTCTACTTTGAAGCTAATGGACATGGCACAGTA CTGTATAGTAAGAATGCAGAGGAGAAGATTCAACAAGCCAGTCAGGATCAAAGCCTTTCAAATGATCAAC GGAAATCTGCTACCATCCTGAAACAGTTTATCGACCTCACAAATCAGACAGTAGGAGATGCCCTCTGTGA CCTGCTCCTGGTAGAAACTATTCTCTGGGCTAAGAGATGGACAGTAGAAGCATGGGATGCATCATATACA GACTTACCAAATAGACAACTCAAAGTCAAGGTGGCAGACCGTACAGCTATACAGACTACAGATGCAGAAA GACAGTGCACCAGACCTGTTGGTTTGCAGGATGTTATCAACTCACTGGTAGCAAACTACCAAACAGCACG TTCATTTGTCAGACCATCAGGAACAGAAGATGTTGTAAGGGTCTATGCTGAAGCTGCTACGAGAGAACAA GCGGACAAACTGGCCTATGAAGTTGCAGGGAGAGTCTATGATCTGACAAAGGGTGTCGGGGATCGTCCAG TGGTTCCAACAAGCTGAAATCCTGTAGACCTAAATAGGTTACCACTACGCACTTGTCAAAGTCTGTCTTC TAAAGAGAAGGTTGGGTTCTGGTAATGGTGAAAAAAGATTTTTGAGCTCTCTCATTCTTTATACATTTAC ATGTACATTGTATGTCATTTTGGAACAATGTAATAGCAGAAATTATCCTGGAAAAGAATTACTCTACAAA TGCACTCATATTTATAGTATGACAAGAAATAGCTGAAGTGTTCAGACCAAACAGTCATGCCACATGTATG TTGTCCCTTACACGTACACATTCCTATGTGCATCGCATATGACTTTCAGCAATATTGAGTACATTTTTTC ATATTTTAGTGATTCCAAAAACCTCACATTATACATAACAATCATTACTTATGTATTACATATCAAACTT TCCCAATTTCTTCCTTTTAAAATGTAATCACATGACCAGAACTCAACCTTATTGGTAAGAGCTGCAAAAC TCATTTACAACAGAGTCAGACTTAAAGGGCAAGTCCAAACAATTCTTAACTTTTAACAGATGAAAGACAA ATATATGGTGTCCTAATATAGTCTATCTAGGAAAGAACTTGATTGGAACATCCATGATTTTTTTTTCCTT TTCATAAAAGATTATATTTACTACCTTAAAAACTCACGCAAAATTGCAATTTGTGCAATGCACATGAATT TTTGGTACCACCACCTTCTGTCGTTTAAATTCAATCATGCGTAAGTTATGAATGATAAGTAGTGCATCAA TTGAAAGAAGAGAAACAGAGCTTTTCCAACATATATATCTCATCAAGGATATTATTATCTATGGTACAAA ATTTTTGCCAAGAAATCTGATTTTCTTTTTTCCACAACACACTGTATATAATCACTAGTCTGGCTTATTA GAACATCCATATGCCTAACACATCGACATCATGCATGCAAGCTGTTGCGGGCCCTGGCAGGAACGGAAGC AGCTAGTCGATCGTATGCAAGCCTCAAATCAGTAGGCAATGTGAGGGAACTACGACACAGGGTTGTGATC AATTTAATTTTGTGCCGTAAATCTCATTTCAAATAACTAATAAGAATTTCTTCATTAAATTTGGGAACAT TGTTCTTTGATTTATTTACGATATGCTGTAATTTTTTTTTTAATTGTCTGGACTGCCCTTTAAAGGTGAA ATTCAAAGAAGATCACAAATATGTCAACTAATGTATCACTAGAAACTGGTAAGCTAACAGATGCCATCGG ACAAGTTTTAGGTCAACTACATATCGGGTGATTTATAAAAATACAAATACAACCACCTCCATAGCACTTG GGATATACGAGAGATTGGCCGGAAAAATAACGATGTTTTAATGACGTCACTATATGGACCAACACTGCCC AAGCAGACGACATCGCATAGAGAATGAACATAATTGCAAAGCTATTATTTCTCAAATTATAATGAGTTTA GTGTATAGAAATGTAATGGCATGTCAAACCATTCAAAAGGGGATATGACCCAATTCTGATAACTAAAATC TTTTGCTTGTAAATACACAGGATAGGGGTTAATTAACAATCAAAGAAACCAGACTTTCAAATTGAAAACC CCCCGGAATGATATTAAGGACGGCATTTGTTCCCTCTTGAAATGCCGAACATACCCCGGTGTGTGCAGCT GAATATACAATGGCGTCTTATTTTGTTTACAAGCGACAAATTCCTTTATTTTTGTATCGCTGCATTTGTC ATCAAAATAAAACCATGCGCAGGGTTTAGAGTGAGGCAATAAATTATAAATTAGCCTGACGCTAGTGTAG TAAGAGAACGAACTCAAGAGAACATGAAAACACAGGCACTGAAAATGTGTGAGATGTCATGGGACATCGT CTGCTTGTGCAAGTCATGTCCATACTGTGATCTCACACATCTCAGCAGCATTCGGAGAGCTCTTCAGGTG CTATGCAGGGGCTGTATTTAAGCATTTTGTAATTTATAATAATCATTACTTCGAATGTTTCCAAGAATTT TGATAACCTTGTCGAATCAAAGTTTCAACTTTGCAATAATGAAAATAAAGTTACCGGTAGTATTTAAAAT CAATGAATATCTACTTTAAAGGAAATCCACCCTGATATTTAGTCAGATTTAATAAAAGCAGAAAAATGAG AGAAACAGATAAGTGCAACTTTTAGCAAAATCCCCCAAAAAGAAGGAAGTTATGAATTTTAAAAAGTTCA ATCAATCACAAATTGGCAACACTGAGTTGTATCTTGTGCAGTCCTCTCCCATTTACTCTGTACAGAAATT TCATGAATTTCTTTTTTCTTAGTTGCTGATGAAGGAATATATTTTTTCTCACAGGGGTTGTGTAGAAACA TATACAGTCAGCTTTGAGTAGGTCGATCTTGAGAGGACTGGATGAAATGTGTCAACTTCTGAGATCCTTG ACTTGCGAATATATACATGTATGTTCATGTCCCTATATTAACTAGGGAACACCGCACAACCATGGCCAGC TCCATTGAGATTACAACTCATTTTCCATGCAGTGCTTTAAATTGTTGTGCAAAGATCAAAAAAATTGAAA TACTTTCACATACACAGCATATGACTTCACAATCCTGCTACAATGTGGACCAGAAGTAAGTGCAGTGATA TCCGATGTAAGAAATCTTTGCCTGCCGTGCACAGGTATCCATGTACATGTACGTGCGTGGTGGACTAGTA TGTAATGATCTGGCTAGTGTGATGGCACACACTCTAAATTGACACTTTATCATAATTACTAAAGCCTTGA GCAGAGCCTAGCTCTGTCAGTATCTGGCTTTGTAAGGAGCAGCTTAAGGACAGAGCCTAGGCATAGTCTC ACATTATAGACACTTAAAGGCAAAACGTCTGACAAGGGCTTGTGCCTGTAAACTAGGGTCCGACCCTAAA TATGACTATGTGACATTGATATTATACTTCACAGGATGTGCTATGGTAGTGATTTCAATGCTAGATGTAC AATTAAAGATAATCTGAAAGTTGGAGTGAAAACAGACCATAATTAATGATAAAAATTGGGAAAAGCTGAT CTGATCAATTCCATAATTCTCCCAACTATATTATTACAATTTATTTACATTTTAGTTGAATGTAAATCGT CACAAAGCAATGAATTTACTCTATATACCATTCCAGACGTTTCAGTCCTGACAAATTGTTAAAAGCCTGT CTTAAGGCCTATGTCTTATTTACATGGAAAAACGGTTGGGAAAATTCAAAAATGGGTGAATTTACTGTTA GAGGGTGTCGCACAGTGATGCTATGAAAGAAAACCATAAATATCTTTGTGGTTTTTTAATAGCCTGTCTT ATGTCTTATTTACATGGAAAAACGGTTGGGAAAATTCAAAAATGGGTGAATTTACTGTTAGAGGGTGTCG CACAGTGATGCTATCAAAGAAAACCATAAATATCTTTGTGGTTTGAGAATTTTTAAAGGATTTTTTGCAT GTCAGAGGGTTAGTACAGTAAAATGAATATGATAAGTAACATTTCATGCAAAAATTATGCAGTTTTTTTC ATCAACCTTCAACAATATTACCGAGTCACTTCAAGAGAAAAAAGAAATTCAAGATTTTTTTAGTACATAG CAAATGGGAGAGGCGCTTGCAAGATACATTACAGAGTTGCCAATTTTTGTTTGCTTTATTCCAACTTCAA AAAATAAATAACTTTTTTTTTCCATTGTAGTTTGCTCAAACATTCATTGATCTGTTTCTCCAATTTTTGA ACCACCTTCAGATTAAGGGGGAAAGGGTTCCCCTGAACATTTTGTTCAAACGAAGGATGCCAACTGCTCA TCTTGGCTCCACACTAACTTGTTGTTTTTTTCCCCCTGGGGGTCTGGAGTTAAATGTTTGGGGTTTGTGT ATATTAGGCCTCTGTGTATGTTGAACATTTTGAGGGTCCCAAAGAACATTTTGTGAGTGGAAAATACTGG AGACCTGTTAGTGTTGAGCCCTGCTTGCATGATGCAAAATGTGTTTTGATGAACCATGAGAATAGTCCAT TAGATGTGGATTTTTTATAATGTGCTTTTTTATGTGTCTCGCTTCCGAATGCCACATTTCCATGTGTTAT CTCATGTTTTTAGACAGTTTGATACTATTAAGTCTTGTTGTATGTTTCATAAGAAAATATAAAGTCTTTA GAATCTCCAATAAGATTGTCAATAAGCTATTTAAGTTTCATATAGATTCTTTTTTTTAAAATCATTGAAA TATCATAGCAAATGTGACATACTAGCTCATGAAGTTAACACTTCAACATGTCATTTGCACAGGTCGTTAT ATTACTTCCTTTTGTAAAATTGTTAATATTCTCTTTTATCTCTTCTTAGTGAACAGTTGATTAATGTTGA CAAAATGTCATGCTAGCTCTAAAAGGGCACCTAATAATCTAGAGATGAATACTTTTTGATGATTTATTTA TGGAATTTTGTATTTCATTAGCTTATGTTTAAAAAAAAAAAATTAGTGAATAGATGGTATACTTTTTGAA ATACATACTATGGTATCGTTCTAATCTCTTTGCTTTTTCTTCTTAATTTCTATCATTGTATCATAATATT ACAGAAAAAGCCTTATCATGCTGTCATACGTAAGAAGTCTATTTCTGTCATGGATGTTTCTTTACGAGTC AAAAAGTATGAGCCTGTAATTTCTCATTATGATTACATTCCTTTTAGGAGACCAAAAATTAAAATAAAAT GTCTACAGTTATGATAATGTATAGCTAAAGAGTGGTCTCTTTGTCATGTCTGAAACAATATGTAATCAGT TTTCTTTTTAGTAGGAAGAAAAGGTGATTATGCTGTAATTTTCAATGAATTTACCCCTAAGGTAAAAAAA TAGAAAATGGCATTTTTTTTTTAGTGAATATTACAGAATGGTTAGATGGAGAGCAGCCTTTTTTTACATG CATCTCTGTCCTAGTTAATTTCTAAAAGAAAGTGACCCCTTCTAGGTGAGTCTACTCTGTGTTCAGTAGA AATGCAAGAATGTTTGTCTAATATCCTTGATTTAGATGTTTACTGTCTTGTCATGTAGTGCAATAGTCAA TTTTCTTTATTGTAGGGTACTGTTTAAACAAAATTGTACCAAATAATTATGTGGTTCAAGAGCTCTGTGT GTTTTGGACAAGAAACACTAAATCTGGTGCAGTTGCCTTGATTTGCTTTTTTGTTATTAAAATTGTAGCC TAAAATAGATGTACATTCCTTTTGTTTAGATACTTTAGTAGTGGACAAGGTGTGTTATTCTGATATTTAT TTGATCTCTTATAAAATCTTAGATTTGGAGATTTGATCTCTCATAGAAGATTAAAAACCCTTAAAATCTC TCTTAAATAGATATTCTGAGAATCATTTTAGCAAAATGTTATCTCATCTGAGACACGCCTGTTTGTGATG CGATAACAAATACGACATGAGTATGATATTGGCTGAAAAGATGTCATGTGACACTCATTAATGTTATATT AATGTTATAATTATGTGTATTACAGTGCATTTAAAAATAGTGTACCCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
