Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT114248.1 TSA: Strongylocentrotus purpuratus WHL22.676347.0 mRNA sequence CGCTGATGGAGAATATTTCTTTATCCCCTACAAGAAATAGAACAGACTGGGAATGGGTCACAATTAAGCC AATCGCAATCCTCGTTCTAGAAAGCTTGACCCTGTAATATTTACGTGGAGTGTTGGCCAATTAGACGAAG GCTAGCAAACTCAATTCCTGGCGTGGTACACGGTTCAAACATCGGAAGTACGGAGAGGATCGTTTTGCGA AAAACGTAGTCGTATCAAACATTTTGGGAAATTTACGCAATTTACAAGGGAGAAGAAAATATCTTTTCCA AAATTGGCAACATGAGTAGCCACACCCTGCCCCCAGAGGGAGGGGGCGGCAAGGGGCCAGCCAGCCAGAC TTCCTCGTCCCAACCCCCCAAACAACAGCAGCAGCAGACACTGACGCAAAAGCTCGTAGCAGAGAAGAAA CCGCAGGAAAAGGCGAAAGTGATAGTGCAGCCGGTTCACCCACCGCTGTCCACTACTCTGCCGTTACTGA GACAGAATGATTCACCAACACCTGTACAACAGCCGACGCCTGCCATCATTGAAACTACAGTGCCAGTCAT CAAGTCAAGCATTCCTAATCTGAAGCAGCAGACTGTACCCATTCTATCAGGTGTAGCTTCCACCAAGCCA GCTCTGATCCCTACTATTCCCATCTCCTACACCACAACCACCTCCACCGCCCCTACCACTACCCCCATCA CACACCCCCATAGTACCAGCTCTGCCACGCCCAACGCCCCTGCCGTAGTCACCACCCAGGCCCGTCTAGC GTACCCGCCTCTAAACGTCACCATGACCTCTGTTGTTCCGACAAGGATCACTACAACCGTTGCTGCGGCA TCAGGCGCGACTGCAGCAGCAGCAGCATCAGCTGCAGGTGGTGTCCCTGTCTCCGGTGTCCAAGCCCAGT ACATCCCCTCTGTGCAAAAGCTACCACCCAACTCGTTACCTGCTGAAGTACCGGGTCATACCAAAGCAGG CTTGGTACCCGCCTCACACCTGGTAGCGGGGGCTAATATGTTAGCAGGGCAGGTGCCGTACATCAGTGGT TCTCCTCTGGGGCTACAGCTCCCACCAGGCACACATCCATACTCTACACAGCTTCCACGTGGACCAACCT CAACTAATCTTAGTCTGGCTGCCACTGGGAAGTCTGGGCTGACCACAGCCTTGTTGACCAGAGCTGGTGT CCCCCAAGGAGCAGTTAGTACTGCTGCATTTCCTCAGCAGTCCATCTATGGTTACTCTCGCCACCATGCA CCGGGTCAGGTCCATCTCTTAACGCAACAACGGGCAGGGTCACCAGGTGTCCTAACAGCTGGAGCCCTTC CTCGAGCTGCATCCCCAGCCAGTACTCTGGCTTCATCACAGCAACATGAATCATTAAGATTGATACCTCA CATGATCCCTTCAAGTCAAGGACTGAAACCCGACAGCTCGACCCAAGCCAAGGTTGAACTCAAGATGGTC ATCAAGAAAGACACGACCAAGCCGGATTCCTCCACCAAGACCGACGCCAAAGCAGACACAAGGCCATCAT CGCGGACAGAGACCACCGATAAACCTGGAGATGCAAAGAAGGACGGGAAAGCAGAAGAACGCATACAAGG AGTCAAGCTAGCCGTTGCCATGGCGTCTGGCAAGGGAACGTCGGCTTCGGAGAAGGACCCGAGGGACGAC GTGGCTCGAAGTGCAGCGGAGGCAACGAAAGTGGAGATGCGGTCTTCGGAAGGGCGCGTGGAGATGAGGG TCGATGTGAGACCCATTCATAGAGGTCCGGAGGTGATGGGACCGAGATGGTCCGTACCGCAGAGATGGGG TGGTCTCCCACCGTCGGGGCCCACAGGGGGTCTACCAAGTCACATGATGACCCAGGTTGTAACCAGTGTA GGGGGTATGCTTCATCCAATCTCATCAGTCCCTGCAGGTACTCCAAACACTTCATCACATCCAATGGTAC GGGCACCCCCACCCACGACATCATCAGGCACAGGAGCATCACAGCCCACTGCAACCAATTCAGGCACCAT TCCCGTTGCTAAAGTCTATCCCCGCCAACAGCAGCAGCAGCAGACGCAGCAGCCCCCTCCCCAGGTACCC ACCTCCCAGCGGTTCCCCATGCTCTCTGATCAGACGGCGGGGCCTGCCTATATCCAGATGCATCGGAGCT CACCGGGCGTGACCGCCAGTACCCCGGCCTCCACCCACCCTGCTACCATCTCCACCACGGTGCCGGTCCC CCACACCACGCCCGCGGGGGCAACAGAGGTCAAGATGGAGAGACCACCGCCCCACGGATATGCCCTCTCA TATTATTATCATCCAGATTTAGGTTACCAGCATGCTGTTGCTATGCAACAATATCCTGGTCGTCATGGTT ACAACCCAATCATTAGACCGCCTGTTGACGGTCAACACCGATTACCTCATCACCCTGGCTCATCGTTGAA TCAGAACAGTCCTGTTGCAGCAGCATTAGCAGCTACGACCCATGCAGCCAATATGGCTGGGGCCCCCGGA AGGCCAGGCCAGCTGACTATGATGGTTGGAGCAGATCACAGGCGGCCTATTGGATTGCAGGGATCAGCTG AGGGCAGTGTTCCTTCGTTCACGATGGCACAGGTACCGCCCGGAGCCCTGGGGTTGACCCAGGGTCAGAT GCCTCCATCCTCCGCAGCCAATCCCGGTGCTTCCCCTCGACCTAGTATTCTCAGGAAAAGAAATAATGAT AGCGCATCAAGCCGGAAACCCGTCATGGCCAGCGCCGTCATGTCACAACCAGGTAGCCCAGGGGTCAAAG TTGAAATCACAAGAATACCGGTCACAAGTAATTCACCAAAGCCAAGTGATTCATTACCCAGTAGTCAACA TTCAGAGAACAGCAACGCCTCTGAGACCAGCACAGATACTGCACCCCTCTCTACCGGTAGTGGTCCCATC TCCACCGGTCCTGGTCCTATCCGCATCAAGCAGGAGACGGATACCAATGGCCTGGACCTGGTACCCCTCG GTGGTTCGGCCTCGACGCACGAGAACAGCATTAGCAGTTTGGCGCCCTCAGTAGGTAGTACGGAGGAAGT GGGTCCATCGCCGAGAAAGAAACCAAGGAAACAGCAGCACATTATTGCCACGGAACATCCGATGATGCTG GATGATCAGTCAACGGATGATGAGAAGGAGACCAAACAGAAAGTGCCTTTCAAGCTGCATAAGAAAGAGA AGAAAGAGAAGAAAAATGCTGCTAAAGCAGCAGCCGCGGCGGCAGCAGCAGCCAATGCAGAAGCAGAGGC CATGAAAGTGGTACAGTTCTTCAAGAGACCATGTCCAAGGCTGGTAGATAACTACAGACAATCCTGGAAA CCAGCTCACAATCACTTTGAGAAGTACTCAGATGTCAAACCTAAAGAAGAGAAGAAGATTGGTATTCATG AAATTGCCAACCAGCGAGGTATTCTAAAGAAGACGGATGGCTGGAAAATTCATCATATTGCCTACCAATT TGAGGATTTAAATTCAATGGAGAAGGATTGTTATGATGAGATGAAGTCAATGAAGGATGGTTTACAAGGG ATGAACAGCAACAGCAAACTGAAGGAATCAGAAACGCATAAACTCTCAGAACTCGTACAGGGGTCGATAC AAAGGAGTCAGTACGTGATGGAATATTTAGAGGAAGCGAAAGGAACAATACTCAAGATGCTCGACCACAA GACAAAGGTTGCCGGCATCGTCAAGAAACACGCAAACAAGAGACATGTCAAGAAAAAGCACAGTCCCTGA GTCCAATGGCCGGGCGTTCACGTCGTGTTCTCGGCAACAAAAAAACTCTCACCGTGGACAATCATTATTT ATAGGGTCAGATGGGGTCAAAGTATGTTAAGGTCAAATCAAATGGCATCAGGTCAGTTCAGCAGCGGTTC AGCAGAGATTTTGCATCTATAATTGAAATATGGCGATACCAACAGGTTGGTCTCTATTTACAGGGAGCTC AATGCATGGTGAGAAAGCAGACTGGATCACAATGGGGAATCCCCTGCGAAAATGCAATCCTTGAAATCTA CAAGCCATGAGGAAGTACTCTTTTGTCCTCCCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCCCTC TCTCTCTCTCTCTCTCTCTCTCTCACGCTAATCACCTGCAGAGTACAGCAAGGCGAGACCGAGCATTGGA AATGGATGTATCACACGCTCATATAGATATTGAAACTCCGAAGCCTTGTCCACACTTGACACGGTAGCCA CCCTAAAGAAAAATGAGCTGCAGCAAAATGGAAACACTGTGCATGCAAGTAAATGGCTAGTGGAGAAGAT TGAAAGTAGCTACAAGCTATGAAAGCTCCTGAGCATACCTGTTTATCTCAATGTATGAGATGCAGAATCA TGAAGTGCACTACGTTTACTGCATTTTTGTTTTATGATGCTGCAGCATTTTTTGTTTGATGGTTATCATT TTGTGTGAACAAGGCTTCTGCATATCTGTGAGGGAAACTGGACACAAAGTGCACTGAATTTAATAGCCTA ATATGAACATCTGGACCCTGTTTCATAAAAATTGATATCAATAACAAGTTACAAGCTACTGTTATAAGCT ACCGAAATCATGGCATCTGATTGGCCGAGAGCAAATTTGTCATAGAAATATAGCGTTTGTTATTGATAAA AAGTTTCATGAAACAGGCCCCAGAATGTGTGACTTGTGTACTGCGAGTAAAACAAGTTATACTTCGAGCT ATACCATTAAAAATAGATTTGATATGGATGAGTATTTAGACAAGATTTTAATTTCCTCACATTACAAAGC AACTGAGAAGTGTTATTGAAGAATAAAGCCATAGTTTACTGGAAGTTGACATTTATCGCACAAATACAAG GAGTGACGGGACGGGGTGTTAAGGGGAGTCGTTTATGAAAGAGGTGCTATTTTTGAAACCTTGGTTAGAT GCATTTGATGTGAAAAACAGTTGATGAGTTTTTTTTTCTGATCATGAGATTTAAGTACAACTTCGGTGCA ATGATTTTAGCAGGGAACAAAAATCATGATTTTATTGATTTGTTCTGATCAGTTTTCTTGAAAAACATTC CATGTTGGGAATATAAAGAAAAAGAGGGATGTAGCAAACTACAAAGTGTGTAATGTAGCATGGCCTGATA CATGCATGGGCACAGTCTACATTGCCCCCCCCCCCCCCCACCAATTATTTACATGGGGCCAATGCGTACA GACCCTAATACTGTCGCTCTGGGCATCGTTTCATAAAACCGTCATGAGTACATGTTCACCGAACATCCCA TTCAAACGTGCGTTAAATTCAATACATTCGTTTCAATGAGATGTCAGTGAACTTGTACTCTTGACAGTTT TGTGAAACGCTCCCCTTCACCCCTTAATGACAAAAGGTGATATGGAGCCCAGAATATTGATTTCAAGATA TTGTTTGTTAATGGCTCACCACCTGAAATGAGAGGGTGGAGGTTGTTGTGAGATATTTATAGAACAAACC AAAAACTATGTCTTATAGAACAAACATTCATTACTTCAGAGTTGGTGAGTGGCTTTGATATTTTGAAACT TATCAAGCCATTCATATGACGTCCCAGCCTCTTTTTCAGTCATGCTCAGATTAATTGATGAGGGTGCGAC TCAAAGCATTCTCGACTAGAGACCTTTTTAGCGTAACCATAGATTTGAAGGCGTCGTTTAACAATGCCAA ATCTGAGATGCAAGGCCCTACGTGTTATCAGTGTCTCTGATATGGTGTAATATCAAAGCCCTAATAAATT TGCGCTTCAAAAAAGTAAGAATCTTTGAGTGAACGGTTTTACCATACACATTTTCCCCAATAGACGGTAA TGTTAAAAAAATCGTTGGGAAAACAGTTTTTGAAATTATCTTGATAATCAAACATGCGATTGGCTTGTAA AAGTCATGGGATTCACTTCTGACCTTAAGTTTTATAATTATGATAGCAGCACAAACTAAATCCAGGATTT TGTTTAGAATCAGAGGCAAAGTTACCCAATACCTTGAATGAAACTAAATGAATGGTGGCTTTAAAGGTAG TGTCAACTCTTTGCAATGGGTCACAAACAGTGGGAGAGGGGGGGGGGGGAGGGGGGAATAGAACTGAACA TTGAGCGATTTTAGCTCTCGAAAGCTCCAAAAGAGCGCTGGTAAATTGTAATGGAGCTCTGGTAACAAAA AAACACGATGAAATACATTTATATCACTGTTGAAATATCACAACATTTCTTAAAAGGAGCCCCCGCGAAC AGAACATTATTTTTGTACGTCTAAATGCCCTTTGAGAAGTAGAATGGTGCTTGGCAGACGACATGGTTTC ATGCCGTGTCCTTAGCATACAAAGAATGTGTGTGACATTTATGATTGGACATGGCTGCAGCCTCTGTCAT AGTAGTAATTGGTTACATAACCTGTAAGGCATTATGACAAAGAATTATGATTGCAATTTTATTAACGAAT AAATGTTATGTCTGCATACTCGCTTCATCAAAGAAATCATTACTTGCTGCAGGAAAGGTTTTTTTAAGAG TAAAACTAATCTGAAATTTTGACAATTTGAGGCTTTCAGTCACACCATCTGGTAGCTATACTGAAAAGGC TATTGATGTAATAATCTATAATTGTCCTTTTCTCTAAATTAAAGCAAGCAGTGCGAGCTACAGTTGTTCG ACACCTGCTCTCATGACAATTTTCTGAACTAAAAGAATTCCTAACTTCAACCTTGGCTACAACACAATCC CTAACCCTTACCCTAACTCTTATCCTAACCAAAAATCAACCTAGGACACAATCGCAGCCCTGACCGTAGA CCGTAAGCTTCAATTCTTTGAATGTCTGTTGTTCCACTGACTGCCTCTTGATGGGGAAGGCTGAAAAATG TCTTTTCCCCCTTTTTGTAACAATAAAAGGAGGTTATTTCTACATCTTTGGAGGAAAAGTTGCCCAAATG TTAGATCCCCTGGCTGGAAGTACTGCGACACGATCCGAGAGAGTGAAGAAATTGCCACATTTGGAGATAT TAAGAGAATGTTGTATACAAATGATGTCATAGTGAGTTTATGTTGTAATATATTGCTGTTGTCTAAGGAC CAGTACTGGTTCATTATTATTACTTTGTATTATACCTGTACATAAAGATGTCAAATACCTGTAGCATTCA GTTGAATCTTTTGTTGTTGACTTTTTGAACAAAAAACAAAAAAATTACATATATCAGACGAACTATGATG TCTGGAGAAACTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds