Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT104932.1 TSA: Strongylocentrotus purpuratus WHL22.462087.0 mRNA sequence CTTATGTCATGTACACGGGGAAAATGGCTAATACACAGTGAATGGATGTAAGCCCGAGTGTCTTGTTTAC ATCGTGTAAAGGTTGTTTTTACAGAATATTACTTGAAATGAAGGATATCAATTAGCAATATGGGGAATAA GGAGTCTAAACCCTCGGTTATACCTTACGAGGAGGCACTGAAAAAAGTGTCCGAGGATGAGTTGAAGAGA TTAAGAGAGGCGTTCAAACGCTACTCCATCCCGGCAGGCTACATGAGCAAACTCATCTTCGTCAAAGATG TCATGGGAGATGCAATGCCCCAGAAACTTGGCGAGCATCTATTCTTTTCTTTTGGTGGGACAAATAAAGG AATTACCTTCAAGGATTTGTTTTGTGGACTTGTCTTGCTGACGAGAGGGAGACAGGCCGAAAAACTCAGA TTTATATTTGGAATGTGTGCGAACCAGGAGAATGGCACGTACGTTACGAGGATGGATCTCAACAACTTCA TCGCCGCCTGCGATGGTAACGCCCCAGCTGCAGACACTGTGCAATTATTCAGAGAGTCTGATCGGGTCTC CTATGAACAATTCTGTAGCTGGTTGATGAAGAACAGTGATGTGATGAAGCTTTCGGCATGGTTACTACAG GACAGTGCCAAACAAGGTCTGAGACTATCGGATGAGAGTGACACGCCCACCTTCTACCAGACATTAGCTG GAGTTACGCACTTGGAAGAGGCAGATATTATTGAACTGGAGAAGAAGTACTGGGTACTACAAGCACAATC CAAGTCAGGCAGACTGGATCTTGATACCTTCACTCCACTCATTGCCCCACCCATGCCTGCAGAACTTGTG GAAGGTGTATTCAATGCATTTGATGAGAATCAAGACAATCATATAGACTTAAAGGAAATGGCCTGTGGAC TGTCAGCCTGCTGCAGAGGACCACTGCCCGAGAGACAAAAGTTCTACTTCAAGATCTTTGATGCGGACCG TGACGGGAGACTGTCCAAGACGGAGCTGGAGAGGATGTGCACGGCGCTGCTCAACGTTCGTCGAGAATCG AGGGTGGGGCTTGAGATTGACTTCAAAGCCGTAGAGAACCTGAACCCTGTGGATATCGCTGGAGACATCA TGTCCAAGCATGCAGGAGACAGTGAGCAAGGTATCACTGCTGAAGAGTTCCAGGTGTGGGCTGTCAAGAA CAGCCTTCCAGATGACTTCAACAAGTTACTCTTCCAGATCTGTCACATCATACTTGGTCTAAGACCGCAG AGTACGGTGGAAGAGAAAGAGGTGATCATGGGGTGGGTGGAGAGAGAAAGGAGAAGAGGACTCAGACCGG CGCAGACTTGGTACCTCATCTCAGCTCACTGGTGGAAAGGCTGGAGCGACTATGTCAACTACAGGCCTAC CAGCAGCAGTGGCCAACAGACGTCAAGACACGCTGGTGTCCAGACCAGCCTGTCCGCCCTATCACCTAAC CACACCACCTCATCACCATCCTTCACCCGTCGCACCCAGGTCAATGGTGGCCAGGCATGGGGCGACAACT ACCGCCAATCTCACTCCTCTCCCTCCTCGCCGTCGTCCAATCAGAACGCCACGACCGGCTCGCGGCCCGG CACATCTCACTCGCTCCCGCGCCACGCTTCGTTGGGTGGATCTACCAGCAGCGTGAAGCCACTGCAGCAT GCGTCATCATTCAACAGCTCCAGCCCTTCAAGGAAGAGGCCTGGACATGCTGTAGCGGTTCCTACCAACT CCATCCCCTGTAAACCCGGCCCCATTGATAATACATCTCTTGTAGCAGCTGATAATAAAAAGCAAGTATC CACCCTGACCAATGAGGGCGGTAGACTCAGACGGCATCCTCCAATCTCTCAGAACAAAGACTATGAAATC ATCCCTGACCCTGTCTGGAAAGCCCTAGCTCTGTGGTATGCAGGAGGACCAGCTCTTCCTAGAAATGTGA TCGTTCAGCCGACGACACAAGGCAATACATCCTGCAAGCTAGAACTGTACCCTCTGTGTGTGAAGTTATT GAGACATCAGACCCCTCAAGTCAAGCAGAATGGTTGGAGTGGTGTCAATCTTGGATTAGGCAATATATCA CTGAGTTCCTCAGGACTCGGTATCAACATCTCAGGGAACAGCGGTACCCCCCAAGCTCCCAAACGCTACC AGGCGTACGTGGCATGCTTCAGTAAGATGCACACGCTCCAGCAGGTCCATGACTTCTTATCGGCGAGGTT AAGGGTCAGGACGGAGGAGATGAGGTTATGGAACCTCAAAGACGAGAACAACCCTGTAGTCCTTGAAGAG GATTCCAGCACGTTGGATCAGCTCGGCATTGCCGATGAGCAGAGCTTACTGATAGAGATCAGGAATAAGG ATCTCAGCTGGCCCGAAGAGATGTCATTATTAGCCAAGAAGAAAGCAGATAGGCAATCGAGTGTGCGAAC AGATAAAGGTGTGACCGGTCTTAGTAACCTTGGTAACACGTGTTTCATGAATTCAGCCGTCCAGTGTATC AGCAACACCCAGCCTCTCAGACTATACTTCCAAACTAAGTCTTACCTCTATGAACTCAACCCTACAAACC CTCTGGGGATGAAAGGTCATCTTGCCAAGAGATATGGTGACCTTTGCAATGACCTTTGGTCAGGTACAGC GCGGAGTATAGCACCTCTCAAACTCAGGTGGACGATAGCCAAGTATGCACCTCGCTTCAGTGGGTTCCAG CAACACGACTCCCAGGAGTTATTAGCTTTCTTACTGGATGGGTTACATGAAGACTTGAACAGGGTGCATG AGAAGCCGTATGTGGAGCTCAAGGATAGCGATGGAAGGCCGGATGAAGAAGTCGCAACAGAGGCTTGGGA GAACCACTTAATCAGGAACAAGTCTGTGATTGTGGACCTGTTCCAGGGCCAGCTCAAGTCTCAGGTCCGG TGTAAGACATGCGGTCACATCAGCGTGAGGTTTGATCCCTTCACCTTCCTCTCCCTGCCTCTCCCTATGG AAAGCTCCATGCATGTAGAGATTGTGGTTGTTCGCCTTGATGGAAGCGTACCTGTCAAGTATGGTTTGCG AC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds