Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041609347.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121415911 (LOC121415911), transcript variant X7, mRNA AAATGACGTCAACGTTACTGGGCAATGGTATACAATATGGCCGCCGTTCGGCTGCAACATTCTGTTGGTG AAAGAAAGAAGTTTATCTTTATTTAATTTAGCAAGAGCTACCGTACGGTACTTGGTGTGCTGACTTCTTT ATTCCTGTTCGAAGAGAATAGTGTTTCCAAGCCGAAGTCAAAATGCCACCAAAAAAGAAAAAGGCAGCCC GAGATCCTGATACCGCTGAAGCTGTTCTTGAAGCACCAGTAGATGAAGAGGCATTAGGACTGGTGAATGC CACTCTTGAGGAAGAACCACAACCAGAGGATGCTGCTGTGGAGGAAAATAAGGAGGATGCAGCCAGAACT AGATCCCCTGAGCTGGAAGAAGACCAGGCCATAAAAGAAGCAGAAGAAACCGAGGATGCAGAACTTCAAA GAGACAAACATCAACACTTCTCATCTGCAGCTGACCAGGGGGATGGACTAGGAGGTGATGAACCTCATGA TGATCATGATCCTAGTCCTAATGGAGAAGACACGGTTGTCCCAAGTCAAGAAATCCCTCAGGCAGACACA GAACCCCAGATGGAAGGCATCACTGATGATGCAGATGGGGACAGAGAAGAAATGAAGAAACTGGACGATG CTGCCGAGGAGATGATCGTGAGGCTGGATACAGAAGAGAAGACTCGCAGTCGAGTGAACCCAGAAGAGTA TGACAATGCTGACCCAAAAGACTTTGGAATCGAAGTGGAGTCCGACGATGAGTATAAGTATCTCCCACCA AGCAACGACGACCTGCCCAACCTGGAGAACCTGATAGGCACCCTGGAGGAGGGAGACAGCGAGCTCCACA CGGAGCGGGAGCCACCGACCCTCTTCAACAGACCGGAGCACGAACCCAGCTACCGCCAGATCTCACACCT GCGCCAGGAGCTGGAGGAGGAGAAGATCGACCCTTACATTGATCGCTTTGAGGACAACGTCCGGGACGAT GTCCTCATGATCGGAAACATCTCCCTAGAGGAAGTTCAGGAGGAGGAACGTCGATTGAGGGATGAGCACA TTGCCTATCAGCAGCAGGAGGCTCAGCTTGCTAGAACCAGACAAGAAGATATCCTCCTCAAGGAAGAACG TTCTAAGAAACATGTCACTGATGTCATGAAGAAGAAGCGCAAGGAGCTTGCCCTAAGGGAGGAACTGAGC ATCCAGAGGGAGCGTCTGCTTCAGGATCAGCTCCATAAGACATTCAAGAAGGCAGAGAATCTCCTGAAAC GGTCTCTGGAAATAAGAAAGGGAGAGGTCAAGACTATGTATGGCGATCTGATGATGGCTGATGGTCAGTA TGGTGGGTCAAAAGGTCGTCGTTGGAAAGTAGACTGGAATCGAGCTCCACAACCCATACAGATCAAACTC AAGTGCCTAAGAGGAGTCAAGGATAAGCTACCTGCTGGCCGGTTCATCCTTATGACGTCCCTGTATGACC GTCTGGGTGGACATGTCTTGCGCTGGTCAAACCTACGTGGTCAAGAATGGTCTGGGTCTACACTCCCTCT CAACCATGATGGCCATTTCTATAATGTGGAGATTACAATTGATCAGAGTCAGTTCACAGTATGTCCGTCA AAGCCGGACATCCGTCCAGGTATGGTACTGGTCTTTGAGCTCTTCCTGCTCCGTGGTACCCTCCTGCCCG TTGATAAGGTGGTGGCCTGGGGCGTATTCCCCATTTGTGATGGTCAGTTTGAGGTCCTCCAGGGAAAGTA TAAAACACCAATGCTGAGGGGAGAGATCGATACTCGCATTGACCGTCATGAGACGGTTGAGAAGCTGATG GCATCAGACCTAGATCACTGGCTTTGTAATCTCTACTTCGAGATTGTGAGGTTGCCAAGGTACCTAGCTG GTCAGAAGGAGTATGAGGTAGAGCTTCAATTTTCCTCTAACCTGATTGGGTACCCTGATAGAATCAAAGG AGCAGAAGAAGCCATTGATGGTGAAGAACCCGTCCCAGGATCTCAGGTTGACATGGTCTCAAGTAATGGT GATAACCAATCAGCTGCTGATGTCAAAGGGTCAAAGGTCAGTTTTGGTCTTGGCAGCGAAGAAGGAGAGG GATCCACTCCAAGGGGAGGTAGCAGCAGCATTGGTACAGGGAGCATCAAGGCTGGTCTCACAAGCAGTGA GGGCAGTGTCAAGGATAACGACAGCATGAAACTGGAGAGCGAGGCCTCTACCAAGACCATAGAATCATCT GAAGGCGTCCGTTTCCGTGGCACCAAGCCAAAGGACGAGGACCCTCCTCCAACCACTGTGGGATCCAGGA AGCTCCTGGGCAAGTACGAGAAGGCTTACCTGGACACGGACTCTGAGTCGGATGAGGACGATGAAGATTA CATCAAGAAGAAGGAAGATGGCTTCCGACCGGTCAAGGGAGAACCTGGACTCTTCTACAAGCAACACCTG AACCCACCGCAGACCGACTACATTCGGCGCATGTACACCATGATCCCCAAGACAACTCTACTCAACCAGC GCAAGAAACGCAAGAAGCTCACTCATCTTGAGGAGCTAGCCACCCATGGCTTTGCTGTGCAGAAACCGTT CTCCACGAAGGGTCACACCGCTCGCCGGGGCCATGAGAAGGTCCAGTACATCAGTCGTCAGCTCTTTGCG GAGCTGGGCTTGTCCCAGTGGCGGTCCAGGGAGTTCTGGACCCTGATCCTGCTCCTGTGTGTTATCTTCT TCATCAGGATGTACCTTCATTACCTAGGCCAGTGGGCCTTCCTTAACATTATCACAGTGCCTATCAGCAA ATTCCAGTTCCTGCCTTACACAGTGACCCTCAACTACCAGTCATCTCTCCTGCAGACCAGCGAAGAGGTA GCAGTGGTCATCCTTGGACCGCTGACCAACATCGTGATCCTCTCCCTCCTCGTTTTCATCTGTTGGCTCT TCCAGAAGGTGGTGGGGAATTTCCCGGACCTCTTCTGCAAGTTCGTCATCGTCTTCTCCATCATGACCCT GCTCGACCCCTTTCTCATCGCCATCATCGATGCGCCTCTTGGGCGTTATTCCAATACTGACAGCGATGTA CCCATAGCAGATGCAGCCAAACTCTATTACCACTTCTACCGTATCCATGACAACGGCCTGATGGGTATCC TGTTGACAGTTCCCATCATCCTCTTCCTCTCCTTCTTGACCTGTGTCATCTTCTACATGTACTTCCTGCG GCTGCACAATAACGGTCGCATGCTGGACATCTTCCACCGTCTCCACGCTGCAGAGGACGACTTCTTCATG CCCTTTGACCTGGAGATCAGCAACCAGGAGCTGGCTTACATCTGTAACAAGGCGGAGCAGTGGAGGGGGG AGGAAGGAGAGAGACGCAAGGTGGCCGTCTACGATTACATTTGGGAAGAGGAAGATGAGGAAGATAATTA TGATGAGAGTCCACAGAAGACCAAAGAGGAGGAAGGCAAGCGAGAGATCACCACTCATGTCTCGGTCCAT ACCCTTCACCTGGATGGCTTGCGAGAGCTCTTCCGACACTTCTTACGCCTCCCAGATGGCTCCATTGTCG AGGTATTTGGTGAAATGGGCGTGGTTGGATTAGACAAGGACTTGCGTGCTGCGCTTCAAAACCAGACCTC CGGTCTTGAGAAGTGGGCGGGATCAGCAGAGAGCATACACCTACTCTCCCTGGACCGGGCAGGGATCGAC CGCACCCGCCCCAAGACCCAAGGGGGCATCGGATCCCAGGATCTGCTCAACATCCCTGGGACACCATCCC CCGCCCTCCGGAGAAAGGGGGAAGCGTTTGGGGCAGGGTCGCTTGGAGAGGGATCCAAGATGACCTCCCA GCCTTCTCTGCAAGTGCCTCATAACCTTGGCGGGGCATCGCCCACCAACAGTGAAGTAGAAGAGATGTAA GAAAGTAGTACTGTACGAGTCTGGTCTGCTTGCACCAGTGGCAGATTGAGTGTTTCATAAGGCTGTTCGT TAAGTTACTAATGACTGTATGAACGACTGGTGAACCTTTGATACAAACCATGTTTCTGTTGTTGTTAATC TAGTTCCTAAGAAAAGGTCACCAGTCTTTGGTAAGTTTTATGAAACACCGACCATGTTAGATATAATACA TTGTCAGCACTATGAGGATGAGAAATCTAAAAAAAAACAAAAAACTATCATTATTAAGCTGGTTGTTTGC ATCTCGTTGAATATTTCTTCTCAATTTCTCCGAAATATATGGTATGTATATTATCTACTACCTTCACGGT ATGTATAATCTCTACTACAGTAACATATATGACATCTCAATTTTTTTAGTGGTTGTCTTAGAAATAGAGA GTATAAGTATGTTGTGTGATTCTTAATATTGGAAGTTTGTTATAATTACTCAATTTGAAATCACTGTCTA TTGATAATAAACACCCAGGGGTTGTAGAAAACAATATTGTGATTTCTTTAAGTACATTACATTGTTTTAC ACAAAGTTGAAATGGTAATTTTTCTTTCGTATGTCAAATATCATTACCAAAATTGAAATCACTTTCGGTA GTCTATCATTTTCAAATACCCATGGGTTGTGAATATAGAGCGATTCTTCATTATGTATTGAAAGGATCAT TACCGGATTTTGATAATGTCTGTCATTAGTTTCAAACACATCCAGGGGGTGGAATTATAGTGTAATTCTT TATTATGTACTTCAGGGGGCCGTCAGAACACACAAAAGTGTCAAGAAATCGATGAATTTATGAATATACA TCAAATCTAGAAAAAAAATTGAACATGCATTTTATACGTTAACTTTGCTGGCTTTCCATAGTTGCGACTG ATCATTAGCAACTCTTTGTAAGACAGGGTTGTGTATTTATTGTGATTTTCAATACTGAGGGGTTGTGAAT ATAGTTTGATTATAAAATGCACATCGGAAATCACTACCAAATTTGAAATCCCATTTTCAAACACAAGGGT GTAGATATAGTGCGAAGCTTCATAATGTACATCGGGGGGGGGTATGAAAGTTGTCAGCACTGACAATTTT TCATTGAAATCCTTGTTTTTGGTTGGCCAAGAAGCACTGGCCTCTGTTTACTCACAGCTTTCATGAAACA ATCCCCAAATTTCATTACCAGTTTCACATCACATCCAGGGGTTGTAAATTTAGTGTGATTCTTCAAAATG TGTATATCATTAGAAATCAGTCTTTCATAGTCTTGTAAGTTTTTGTACATATTATGCTTCAAAGTCCGTC CATGAGCGGTTATGTGTCTTTCATGAAATCATGTAATATATAGAGATTATATTTGATAAATTCGATTTTT TTCATATTCTGTATGCACAAAGATCAATCCTATTTACGTATATATACCCTACAGTTCTATTTATCTTTGT GTGGTGATGTTGAATTTCAATTTGTATGTAAAAAGCCGTCCATTTCTTTACCTTGCTACTTGATAATGAC ATCCTGAAATGTAACATTGTTTGCAGTGTACAAGTATGATTGTGTAAAATTTTTCTTTGCATAATTCTCT TAAATAAATACTGATCACACTCTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds