Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030986983.1 PREDICTED: Strongylocentrotus purpuratus multiple epidermal growth factor-like domains protein 6 (LOC115918685), transcript variant X2, mRNA TCTTTTTATCTTCCAGATACCAACGAATGTCTTTTCAGCAATGGAGGTTGCAGTGGTAGATGCTGTAACA CCATTGGTAGCTTCTACTGTAAATGCGATGTTGGATTTGAACTTGCCATGGATGGATTCAGCTGTAGAGA TATCGACGAGTGTGAACAGAACAACGGAGGCTGCCAGCACACCTGCCGTAACACCCACGGAAGCTTCACG TGTGAATGCCCCTTCGGAGAGCGACTCAACCCCGACGGTGTCACCTGCACTCCTTCAAACCCTTGTGCCA TCAACAACGGAGGTTGCGAACACACCTGTCTCAACATGGGTGATAGAGCCTTCTGCAACTGTAACACTGG TTACAGGTTAGCGCAAGATGGGAATAACTGTGAAGATATTGATGAGTGTGCTACCAGGAACCATGTATGC CAGCAGGAGTGCACCAACACCGTCGGATCATACCGCTGTAGCTGCGTCACTAACTACATGCTTGAAACAA ACGGCAGGACATGTAAACTGCAAGCAATCATCGACATCGAGCCCATCGACCCGTGTGAGAACCACCAATG CCAGTTCAACTGCACCATGAAATGGAACAGGCCTGTCTGTACCTGCCCTATAGGTTTCGAGCTCTCACCC GATCAAAGAAATTGCCAAGATAAAAACGAGTGTAACATTGGCCAGAGTTGCTGCGCGGCCACTCACCAGT GTATCAACACCGAGGGCAGCTACACCTGTCTCTGTCGTCCCGGATTCTTCCTGAGTGATGATGGATGCAG TTGTATCGATGTTGACGAGTGTGCACAGCGTAGCAGTAACCAATGTGATCAGACATGCACCAATACGCAA GGATCGTACCTGTGCGGATGCAACAATTCTTTCCAACTGGGCGACGACGGTTTCTCGTGTCTTAGAATGT TGCAGACACGCCCAACTCCGTCATCTCCAAGCTTCCAGTTCCCTCCTTTCCAAAACAGTGAGCTAAGTAC AGGCCAGCTGGAGCAGGGACCGCAAACAAGCTTTTGTCGAGAGGCTAACTTTGGACCTCAGTGCCAGTAC TCGTGTACTGACTGTATGAACGGGGCCAGCTGCAACCAAGATCTCACCGGGTGTGAATGTCTACCCGGCT GGCAGGGCACCATCTGCAACGAGACTTGTCCATCCAACTTCTTTGGTGAGAATTGCCAGCAGCCATGCCT TTGTCAGAATGGAGGAACCTGTAACCCCATCACTGGTGACTGCACCTGTCTACCAGGAATCGAAGGTCCT CGTTGCACTGAAGGTTGCCCTCCCGGATTCTGGGGCAAGGACTGCGTCAAGGAATGCAACTGCCCGTCCG GTATCACGTGTAACGAGAGATGGGGAACCTGCCTGTGTAGGGCCGGCTACTTTGGACCTCACTGCAGTCA ACCATGCCCCGCCTTCTACTACGGCAGCATGTGTAATGAGCAGTGTGACTGTCATCCGGTCCATTCCTTG GGATGCGATCCCGTCGAAGGTGCCTGTAGGTGCAAGCCTGGATACGAAGGAGACAGATGTCAAAATGAAT GTCGTCTTGGGATGTACGGTGAGCAGTGCAGGCACGTCTGTCAGTGCCTTGATGCTTCCATGTGTAACAA GGTCAACGGAGAATGCAGCAGGGAATGCTCGGCAGGGTACACGGGAGAGGCCTGCGAAAGATCTTGTGAC TTTGGAAGCTACGGAGTGAACTGCAAGTTCACCTGCCGATGCGGAGGAAACGATTGTAACAGCATCACTG GAGAATGCTTCTGTGAGGCTGGCAAGACCGGGACTAGCTGTCTGGACGATTGCCCCGATGGTACCTGGGG TATCTCCTGCAGGAGCAACTGTACCTGTACTGAGGATAAGGTCTGCGACAAGACCACTGGAGAGTGTCTC TGCCCGCTGGGATACTTTGGAGAAAACTGCAGGGATCCTTGCCCCAGCGGTCGCTATGGTCTAATGTGTC GTCACGATTGCCAGTGTCAGAACGGAGCTGAATGTAACTCAGAGTCAGGAGACTGTACCTGCACACCGGG ATGGAAGGGACAGTTCTGTACAGACGAATGCCCTGTTGGTTTCTATGGTGTCGGCTGTGCAACGAGATGC ACCTGTGAGAACAGTGCAGGATGCGATCCTGAGACGGGAGAATGCATCTGTACTCCTGGATGGAGGGGAG AACAGTGTGACCAAGCTTGTGAGCCTGGCTTCTATGGTGTCAACTGTGAGAACCTGTGTATGTGTCTCAA CAACGCTACCTGTGATCATATCAGCGGGACATGCACATGCGCACCAGGATGGAGAGACAGATTCTGTGCT AAACCCTGCCCTGATGGTTACTATGGTCTAGACTGTCGTCATCGCTGTAGCTGTGGTAACGGAGCTCATT GTAACGCTACCAACGGACATTGTAACTGCCCTGCTGGATACACAGGACAAGGATGTAGAGACGAATGTCC TGAAGGTCATTTTGGTGAAGACTGCCGAGGTACATGTAACTGTGCTAACGATGCTGAATGCGATCACGTC AGTGGAAGGTGTATCTGCCCCAGCGGTTGGATCGGAGTCAGGTGCCATCAACAATGCCAGCCCGGTCGCT ATGGTATCAACTGCCAGCAGCGTTGCATCTGCCAGAACGGACTCTGTGATCATGTGACTGGGATGTGCGC CTGTGCGGCCGGATGGGTGGGACGTGCCTGCCAGCAACCTTGTGCACCAGGACACTTTGGCATCGGATGT CTGCAGTCGTGTTCTTGTCAGAATGGAGGAAACTGTGATAAAGTCAATGGAACATGTTCATGTGCACCAG GATGGCACGGAGATGTCTGTGAACTAGCTTGCTTCTCTGGTTACCATGGTGTCAACTGTGAAGAGAGATG TCAGTGTCAAAATGGAGGTCAGTGTGATGCCCAGACTGGTGCATGTACATGCACTAATGGCTGGAGAGGA AGGCTATGTGAAAAACCTTGCATCCCTGGTACCTACGGCAGCCAGTGCTCAGAGACCTGCGGCTGTGGAG CTGAGAACCCTTGTGATCACATCACCGGAGCTTGCAGGTGTCCTCCGGGCTTTGCTGGATATGAATGCAA CTCACCTTGTCCACCCGGAACATGGGGCCAGGATTGTGCTGAGGCCTGTACCTGCGGACGCAACACGATC TGCAATTCAGTGACCGGGGACTGCCAGTGTAAGCCGGGCTTCAGAGGACACAACTGTGAAAAGGATTGCA AGCACGGTCGTTACGGACCCGACTGCCAGCACCATTGCAGCTGTCTGAATGGAGGATCTTGCCATATGGA TGATGGAACATGTCTGTGCCAGTCAGGTTTTATCGGTGCACTCTGTGAGAGAGCTTGCCCCGACGGACTG TATGGCCAGGACTGCCAGCATAAATGCCTCTGTCAGAACGGAGGTGACTGCCACCACGCATCAGGGGTGT GCGAATGCTCCCCCGGATACACCGGCACCTTCTGTGCTACAAAGTGTGCATTGGGAACCTACGGCCCAGA CTGTTCGCAGGTCAAGGATTGCCAGTTTGGTGGAGTGCTAGATGTTATCACTGGAGAGTGCCAATGTGGG CTTGGATATACAGGGGAGATTTGTGATGAAGAGTGTCCGTGGGGAACGTACGGTATGAACTGCGAACAGG AATGTACTTGTGAAAACGGGGCTGAGTGTGATAGGATGTCCGGATGCTGCTCGTGTACTCCCGGTTTCTA CGGACAAAACTGTCAATTTTCATGCCCAGCGGGTACCTACGGTTCCTATTGCGGCCGTATCTGTGATTGT CATAAAGACGCTACGTGTGACACAGTGACCGGTCAATGTAGGTGTCCAGCAGGTAGAACTGGACCGGAAT GCAAGCAGACCTGCCAACCTGGGTTCCACGGTCCAAACTGCATTCATGTCTGTGCCTGCTCTAACAGAAC ACAGTGCAACGCAGTCGCAGGTACCTGTGATTGCCCCCCTGGAAATACAGGGGACACCTGCACTGAAGAG TGCGCACCAGGCAAGTTTGGTCCAAACTGTGCTTTCAACTGTGACTGTTCAAACGGTGCTACCTGTGACC CCAGGACGGGATCTTGTAGATGTATAAATAACTTTATTGGTGCTCAATGTGAACATGGTGGTTTGTATGC TTTTCCCACACCGTCAACGCCGCTCAGAGGTGACATAGGACCCAACGGATTCTAACAAAAAACACTTCTG AAATACAGACTCTGGAAATAAAAAAACTAAAAATCCAATCATGCAGCAGCAGCATTGTCACACCCAACAA GGCTTTTGTTGATTGTCTGGACGATGCCAGCTCTTAACGAACGGGAGGCGAGGATAGAGCAGGAGACGTC TTCAATCAGATGAATGAATATTCATGATCCAGGAGGTCATCTCAGGTCACCATTTACATATTTGGTCACA AGAGGGCAGCATTTGACTCTTCTCATCAGACCATACTTTAAGGAGAATCGATTTTGGAGCTTTCAACAGT AGCAACCACAGCTAGATCATGCATCTCATCTAAAAAAATGGAGAAAGTTTTTTTTTTTCCAGAGTGTTTT TTAGAACGTTGATACTTTTAGTTAAGTTATTTGAAGGAAATGTTTGAGCCATGTCGACAGTATCAGAGAT GTGTATGTACAGCTTAAATCCTTTCACACTTTCACATGGTGAGATGTATACTTACAAAAAAAACGATGAT GGCATATTTATTTCTTATTTCTTAAGGTTTGTGACTTTAAGATGTTCCAAGGTGCTCGCTCAATTTTAAT ATTGAAAATAAATGGATACAGTGTATATCCACTTTTCATCAAAGTCTAAGAAAAATTTGCGCACTGTGAT GAAGTATGCTTGGAATCGGCATCGACCATCATTTTCTGTAGCAAGAGAGATATCAATACGCCTCCCGTGA CCAAACAACCCATGCTCTCTATTCCTCTGCTCATCCTCGCCGTTTTGCAAATGATTCTATTTTCATCCTG GCTTACACCATGTGATTTTTATCAATCTCCCAGCATTATTTATTGTACATTGTATGAGGTTTTCTGAATA GCAACCATAAGAAAAAAAGTATTGGGTCACTCGCTCGCTGCAAACCTCAAAAAAAGATTGATTGATTTGA GATATGCGCGCATGGTACTCTTTTAACTCGTAGAAAAAGATTGAATAGGTTGTGCATGAGGTCGATTCGC TTTTAAGTTATAAATGTTGTTGATGGTGTATCAATGAAACTGGAATCATGGATTGAGTTTGCTAATGGAG ACATACAGTAATTGCACAAGTTTAGAATCCTCATCAAGTATAAATATATATATATTCATGTAGGTAATGT GTCGATACATGCAGCGTAAATGTGAAAAATATGTTGTGTCAAGATTTTAACGACTTTAACTAATGGTACA TGTATTTCCTCTTTTGTTTATAGTTTTGTTGATAATTTAGATTTAAATGACCCGATACTATGTAATGCAA GGGAGAGTGGATGAGAAAATGTATGCCGTGAAATTTTGTTTTGGTGTATATGAGTGAGTATTGAATGTTA GTAGAAAATGTACAATTTGATGTGAGAGAGAGAAAGAGAGAGAGAGAATGAATAAGAGAAAGAGAGAGAT AGAGAGATTGATTTCTTTGTAGCACCATCTTCCACTACAACCCTATGTTTCCTGTAATAATCATTAAGGA AAAGTTAATTCTGTCTATGCAAAGCTACTATATTTCTAGATAGCATACCAATTATGCAAATCTTGACATA ATTTACTTCCAATCTCGTGTTTTAAACTATAATGAGTAGAAAGTAGTAGAAACTAACATCTCTGCAAGTA TTGTTCATGTATATCTGTACAGAAGAAATCGAGGTATTTTCGACAGATGTGCGTCGTGTATCCTATGCAT GTAGAATCTATGTATTCAGTAGGACCCCTGTCTTATCTATTTCATATGATTCAGGTATTTCATATAATTC CATCATCATCTTATCTGTTATATTAGAAGAGGGATGATTTCAGTGATTTTCAGATGTGTACATGTATATG CTGTATAACAAATTCTCCTCAAAGTGTATTGGCACCATGCCGCCTTTGTGTAGAATTAAATCGCTGTCTA TTTATTCTCAATACGAATACAATGTATTAAACAAAGCAAGAACTGTTCTTTCTGAAAAAAAGAACGGTAG AAGTATTTTTTTCATATCCGTGATGATTATCGATGCTAGTATTGGATTTTTGTCTATCTATGATTCTGTT GTAGTTTGACAGAGGTGTATTTTACGCTGTGTAAAATAACGGTTATTTATGTGTGTGTGTATTTTTAATA CAGTCCTCTGTTGTTTTGGGGTTGTTCTTTGTCGAGTTGCTTGTTTTTTGTCTGTAATTTATATGTGCTG TCTAAGGCACTGGTGAGGCTGAAAAGACTACGGTATGTGGAGCCGATCTGCTCTGTTTTTATATTTCTTT TTTCTTTTCTTTAAAATATGAAGAGATTAGATTGCATCATACATGGTATATTTTCAGGGGATAAGGCCTG CACACTTTTACGTACCGGTAAACAGATGGAGCAAGATAAAAAAAAATTAAATTTCGTTTAGCTCTGACAA AGTTGTGAATATACATTTAAAGTCTTTTTTGATAAGAGATGGTTTGTGCAGGAAAACCATTGTACCCTGA TAATGTCCATATTTTAATTCTTCAAATAATTGGTCATTCTTAAACAACAAAGTAAACTTTTCTAATTACT ATTCTAATATGTGTATGCTCTCAGTATAGTTATAATATGACAAACTGTATTGTTTTTAAATTTTTAACAA GTCGATTGATATATCCATGACAATTGCCGAAACTGTATGATAAGTTTCAGTAATTTTTGTATTAACAACT AAAAACAAAACGTTAAAAAAAAATTAGAAAATAAAAACAGTAAAAATTTGTTAATGCTGCTTCTCTGCAT CACAACAATATATGTAGCTAGTATATTTTTATTTGACGAAACATGCGTAACGTTTTGACCTTTGACTTCT ATCTAATAATATAAGCGACCAATACCGTGTGACAACTAGTCTTAACCTCAGGATCTAACATTTTATGTCG GATTCATACCATATGAATCTTTATTCTCTTTGAATAACCAACTGTATATTAAGAAGAACTTAGTCTAAAA AATATGCATTATTTATTACTTATCATACCTTACCTGTTGAAAATGTGTTTTGTAAAAGTAATGAAAATTG AAAAGCCATAAAATTCCTTCAGGACCACATTAACAAATTTCTTTTAATTGAGACTAACAAAGCTTCATTA ATCAGCTCAATGTTTCGACACCATGGTGCTTTTTCCAAATGGAAACAAACTAAAAATGCTCTGAGGAAAA GAAACCAGTTCACAATACCTCCTACCCATTCAATACATTTTAGATATGTAATATCCATTTCTGTGGGTTC TTGTTCCATAAAACGTAACAGCAGTATCACGGTCAGTTGACAAATGGTGTAACTTTGCTGTATGCTCTTT TTTTTGCCTCAATGCTGCAAATTTTCAGGGAATCCAACAAGTTTTCAAAAGTTTCTTGATCCAACCGACT ATTGAAAATGGTTGACCTTCTCACCCACATCGGTTTCCATGGTGATGAATATTTATATTAAAATCTGGTT GGTTATTTCCCGATATAGCAGCAAAAATCAGGTCAAATTTTAGCAGTGTAAAAGAATCTTCTGAGCCATA ATCTGTCTGTTTAAGTGATGTGAAATGTCATAACAAACTGAAATGGTGCTGAATATACACTGATTACTGA TGCTTGCACAGACGTCTTTTTAAAATACATAGTTTGCGGGGTGTCTCTTCATACCTGCCGACTACTGAAT ATCCTGGGTGGTTATTTGTGTGACATTCAAAGCGTTAACCAACATAGAAGGAAACAGTTTGCAGAATACC ACCCCAAATTTTCAAAGATATTTTGTCACTGGCTTTTCTTGTTCTCATGAAATAAACAATGTCTCAAATT TTCTCGAGACTGATCATACATATAGTTATGCATATATATTAAAAAATGTGATGTTCTTTAATCAATGACC AGAAATTTCTACTAATGTAAGCATGTTAATGACGTTTTAGTATTTATGTTTAAGCTTATATATGCAACTT TTGTGAGCATTTTTAATAAGGTAGTAGTCTGAAGCAGCAATATTGACAAAGTCTGAATATAAATTATGAT ATTTTTGAATAACATTTTCTCAATTTCCAATCGTATTTTGTATAAAACTGAACTGGATATTTCAACCTTT TTTTTTCTTGCTGTATTTTTGGAATTCATAATAAATTGATGATCTGTTATAGATCACATGGTATGTAAAT AAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds