Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979621.1 PREDICTED: Strongylocentrotus purpuratus methylcytosine dioxygenase TET3 (LOC580376), transcript variant X2, mRNA CCTCTTTAGTTATAGATAGGGGAAAGAACATGTCCGCGTGCATAGGAAGCAGACAACAAAGCCGGAAAGT GAAGATTGACATTCCAAATTCTGTTTCATGTTTCCTATTTACGCGGCGGCGGCATCAGGAGCCGGCCAGC AGCCTACCGGTCTCTTGGATGGAGGGTCGGCCGCGGGGTCACCAAGAATGAAAGGCGTTCGGCCCCCTTC CCTGCCTACGGGGGGGACTGATGGGCAGGACATGTCGTACCTACCCAACGTGCCGGTCTCTGATGGAGCA CCACCTAACCAAGTGGTGGGTAAGAACGGCCAGGTCATGCAGTGGAATCCTGCAGGACCCAACGCACCAC CGGCCCAGCCGCAGATGATGAATGGCTACTCGGACCAGTATCCTCACCATCTACCCAACCACCACCTTCC CCAGCACCCGCAACAACCACAACAGCAGCAGTCACCACAGCTGCCACAGTCGCAGCCACAACTCAAGGGA GAAGATGCACCAAAGACAGGCCAGGAGCTGACTCGGAAGGAAGCGCTTCCTAAGATGTCTCCAGGAGAGC CGGCACCAAAGACTGCCAAGGGGGTGGAGCAGGGCAAACCGGGCAAGGAACATGGTCTGTCCGCATTCTC CCCCACTCCTGATTCAGTCAGTAAGCCTCACGCACCGGCACACACGCCGCCAGGGATGGCAAGAGAATTG GCAGAGAGACATTACTATGAGAAGATGGTGCAGCAACAGCAGCAGCAGCAGCAGAAACTTGCTGATCCCC ATGAGATAGCTGCAGCAGCCGCCGCAGCAGCTGCTGCAGCTCACAGAAGCATTCCACCCCAAAGCTACCC CCATCACCCTCATCACCTATCAATGCCACATAAACCAGAAATCAACAATCATATCCCTATAAAGAAAGAG ATCCTTTCCCCGGTGGTTGGGGTCACTGGAACTCCTATACCTCCTCCAGATAAGAAGTCCCTCTCCCCAG TCGATGCTGCAGAGTCCTTGCTTTCATTAAGTACTACACTACCTGATAAAACCAACCAATTCACAGTCGG TAATTCTTTCAGTCATGCCAAACCCTCAGTCAGCACCATGATGCTAGCACCTCTTCCCCAACCGGTTAAA AAAGAGAGCACTGGATCCAAAAGTACTCCTGGGCCCCGCCCATCTGAGATCTCCTCCCCGTCTTCAGGTG CCCCTACAAAGATTCCCCTGAACCCACTGGAACCTGCCCATCCAGATGGGGTCGCTGCCAGAGCAGAAGT CCAGAAGATGGCCCGACAGGTCCCGCCGAGCCCCTACAGCAACATCATGCTACCAACCATCATGCAGAAG AGCGACGGTAGGATGGGGTTGGCCAAGACCGCTCTCTCCATGAGCTCTCATGGGATCAGCTCCACTCACG CCATCCAGGGGGGTACAGGGGACAAAGTGGAAGGGGGCGGTAAGGGAACCACCCTGCACCCTACCCCACC CACCGTAGATTCCCTCATGGAAAGGCAGAAGTTAGAGAAGGGTCTTCAGACGCCGCCCAGATCAACGGAT AAACCTGTGATCGAGACTCCAGAAATGAAGCACATGCAGTTAATCTCTGAAGATGCTCGCATCGAGGCTC CAAATTGTGGTTGTTTAGAAAATGACATGGATGAGGCACCCTACTACACTCATCTGGGAACAGGTCCCAA CCTACCAGCAATCAGAGAACTTGTTGAGATAAGGAGTGGCTTCCAAGGTAGTCAGGTGAGGATAGAGAAG GTCGTCTACTCCGGCAAGGAAGGCAAGAGCTCAACGGGATGTCCCATCGCAAAATGGATCATCCGAAGGT CGTCGACGGACGAGAAGATCCTCGTCCTGGTCCGTCATCGTCCAGGACATCGTTGCGACACGTCGTACAT CATCATCGCCATCGTGGCATGGGAAGGGGTCAACAACTACGTGGCCGACGACACCTACGAGATGCTGCGG ACAACGCTGCCCAACGGTGCCATCCCTACGGTCAGAAGATGCGGGACAAATGAAGATAAAACGTGCGCCT GTCAAGGGTTCAGTCCCGACTCCTGCGGGGCATCCTTCACCTTTGGCTGCTCCTGGTCCATGTACTACAA CACCTGCAAGTTTGCCCGCAGCAGGACCCCCAGGAAATTCAAGCTCCTAGAGGCCAATCCTGAAGTGGAG GACGTACTATCGGACCGCTTCCAGAACATGGCCACCGACCTGGGCCCTCTCTACAAGCGCCTGGCTCCCG AGTCCTTCAACAACATGGTGGTGTTTGAGGAGGAGGGCAAGGAGTGCCGGCTGGGGAAAGAGACTGGGAG GCCATTTGCAGGAGTTACTGCCTGTATGGACTTCTGTGCCCATGCCCATAAAGACCAACATAACATGAAC AACGGCTGTACTGTGGTTGTGACGTTAACGAAAGACGACATACGGAATAAACGTCCTTCTCCCGGCGACG AACAACTCCACGTCTTGCCCCTCTACTACCTTGACAGCACAGATGAGTTTGGCACCGCCGAAGGACAACA GAACAAAGTCCGCAACGGATCTATCGAGGTACTCACCCACTATCGACACAAGATCAGGGTTCATGGTGGA GACCCCGTGGTGCCCAAAGGTGCCATGAAGTCTAGGAACTCCTCAAGCAGTAACTCAAGTCCGGGAAGAG CCAAATCCGCTGCTTCCGCCGCAGCGGCTCAGAGAGAGCTGGAGAGGGAACGGGAAAAGGAGAAGGAGAG GGAAAAGGAGAAGGAGAGGGAAAGGGAGAGGGAGCACGAGAGGGAAAGGGAAAGGGAGCACGAGAGAGAA AGGGAGAGGGAGCACGAGAAGAGGGCGGCTGCAGCGGCATCGGCGGCTCAGAAGGAGTTGGCGGCGGCTG GTCATGGGATACCCAAGGTTGAGCAGCCAGTGCCTCCACACATGAATCCTCAGACGATGCAGATGTGGCC ACACTATCAGCAAAGCATGGAGGCGTTGAGGGCGCAATGGCCAGGGATGGAGATACCTCCAGGAATGGTC GGGGGATTACGTCCCGACTCTCATGCCCTAATGATGATGAATGGACTGCATCGTGAGATGCTGACACCCG GCGGTTCCATACCTCCAGAGCTGGCCCACATGTACGCTCATTACGCTCGCTTCCTCCCTCCTGGGTACGT TCACCCTGCAATGGCAGACATCATGCTTCGAGAGCAGCTTCAGAACAACCCTGCAGCCCTTGCAAGATTC ATGGCTCCCTTTGGGCAGGATCCTTACGGGGGACAATCGTCAAACCCTTACATGCATCTTGCTGCGCAAT ATGGAGCAGACATCAAGCCAGACCCATCCATGCTGAACAATCCTCGACTTGAAGGCTTTTATAGTCCGTA CCTGAGTCCTCACTTGACATCACCTCAGGGAAGGGAACCAGGCCGTGAAGGGGGGTCACACCTTCCAAGT GACGCCTCTTCCAAGTTTCCTTCCCCTACCTTGAACGGTGTCCGGCCGGATCCTCATCACCCTCATACCA GCCAAGCGCACCATCCAACCTCATCTTCATCAGCGACATCGTCATCGACATCATCAGCTCAGCCACACCT CTCCTCATCCCACTCACACAAAGATGGCATCTGGAGACCTCCAATATTCCAAGACAGTCCCAAGAAAGAG CCCAACTCTGGAGGACATCACCACAGCAGCAGCAGTAACAGTAGCTCTCGCCCCCCAGAATCCCGCACCC CTCAGAAGTCACCTGCCTACTCCCCCTCCGTAGATAAATCCATCAGGCCTGGTGACCCCAGAGACCCCTA CATATTTAGGGACGACACCCCAAGCTCCAAGCCAGTCCATCATCACAAGTCCGAGGGGAAGTCGTCCAAA GGCAAGTCTGATCCCCATCACCTTCACCAGGCAGCACACCCTGAGAGGTTAACACCTCATGAAGGCAAAG ACATAAAACCAATATTCCCTATCCCAAGTCTTCAGGATCCCATGAACACCCCTCCACCTGCGCGGTCTGA GGAGGAGTACTTCTCCGACAGCGATAAGTGCTTTGAGGACCCGACTATTGGTGGGGTTGCAATTGCCCTT ACACATGGCTCTGTTCTCTTTGAGTGTGCAAAGCGAGAGCTGCATGCAACCACGTCTGTTCAAAACCCCT GCAGGCAGCGGCCGACTCGTATCAGCCTGGTCTTCTACCAGCATAAGAGGATGACGTACAGGAACCACGG TCTGGAACTCTATGAGAAGAAGATGGCTGCACGGTCGCTGGAACAAGAAAACGGGGAATCCCCCAGTGGG AAGGGTGGTAAGAAGGGTAAACGTCCAGCCACGACGGACGACTCCAACAAGGAATCGGTGGCAGCCAAGA AGAAGAAGACAGAGGTTGAGAAATCCCAGATCCCCACCAAATGTGCAGTTACTCCCTCCACGAATACGAC AGTGACTTTGGCCTCATACGCTTTCCCCACTGTTACTGGGCCCTATCAAAAATGGGTTTGATAAAAGAAT ATAAGCTCAGGTTTTTTATCTTTTAGGCTTTCAACTGAAATCAAGACCTGGTCTTTTGACTATACCATTC AGCAATCCCCTTGAATAGTAATCGGGATGTTGTTGATGTTCCATTTCCTATGTCTTTTCCCTAGTTTGTG AATACCATGTCTATGCAGAGAATATATGCATAATCCAATCGTATGCAATGATATTATAACATATGTTATT AATTATTGTCCCTGAAAGAAACATGTTTTCTCGAACCATGTATGTCAAGTAATCTTGTCCGTGAGTGCAA TATTCATAGAGTATATGCACTCCCTCTTAATTCTCTCGACTGTTTCGTGAATCGCGGAAATACTTCTAGT ATTAGCTAGAAATATCCAGGACCAAAATTTTGTATAGAAATACAAATGTCATAGATTCAATATATATTTC TGATTAAATCACAGAGAAAATAATGATAAATTTTAATCTGAAATTCCTAACGATTTGTGGAAAAATGAAG TTCTTTTTATATATTCCTCAGATTTTTAATTGTAAAAAGCTGTGCTGTGTTACTACATCTATGTGTTTGA TAAAGTGCTAGAAATGCAAGTCTATTTTCCAAAGGTATTTCATGAGCCAACTCAAGTGTATCATTTGAGT ATTATACATATGTGAAATAATGTTTTAAAGAAAACTGAAATGTGGGTATATAGACTTGGCTTCCCCATAC AATTTTGATAGTAATATAACGGTTATACCTTCATCATGTTGCAAAGGAGGAAACATGCTTCTGGTGAAAT ACAGCTCATGATATTATCGTTGCAAACAAACTCTGCCAGGGAAAGTGTCTTTTGACAAAGTGTTTTTTCT CTAGAAATATATATGTTATCCCAAGTCAGTGTTCCTCACTATGATAAATTGGAAGTGTTTATTCCGACCT ACCTCTCAACTTTTCATTCAATTCCTTCTTTATTTTCTCTTTTAAAGAAAAAGTTCAGCTTAAAATGTGT TTGTTTTAAAGCTGTTTTATCATTTTCAATTTTGTTTTTTACATTGTCACAGTTGACTGAGAACAATGCT GCTGCTCCAAATTTGATAGAATTGGGATTTAAATATCCATATGTCTCCTTTTTTAATGAAAGTGGTCAAC TTGTTTCTGAAAGGAAAATTACAAAGGAATGCAAAAAGATATTTTCAAAATGTATAAAGAGCATATCGTG TAATTGGGGAAAGTTACATTTCAAAGAATGATCACACATTTGCAAGTGCTTTCAAGTTATTCTCAAACAC TGTCCAATTAGTATTTATTATTTGCTGTTGTATCTTTACATTATGCGTTGAGATATCTCATGTTTTACTT CTTCTCTTTTTTCTGTCGTAGATACAGAGAGATATTGCGGGCAGTGATTCTAGTCATGGTCTTCTTTGTA ACGAATTGAAATAGATGTAACTCATAAATGGAAAGGTATTTTTTTAAATCTTAGGATGAATTTGAATCAT GAACCAGTAAAAGAGTGAAATAGTACCCAGAAGAGGGATATTTGAGCATGTTGTTCTTGAAATACTCCAA CAGGAAAAATTGAGAATTAGTTCTATTTAGCAATGCGTGTGTTTTACCCATCATGGATGTGCATATTAGC TTGTAAAGTGATTCTTAAAAATGTATATATATCTGTAAAGGTTTGATTAGTTCAATATTGTAATATTCTC CGACATTCTTTCAGTAAATTTGTGAATTTTTTTTCTCAACTGGAATTTTACAATCACCCGCTCGGCTTTT GAAAAGCCAGTGGATTTTTAAGAAATTATTGTCAATTTTTAATGAAATGATGATTGAATAATGATGTTGT ATATATGTATTATGAATAGCTGGGGAGCTGGTTTTATGTGTGTACATTTAATGGATAGAATATTGTGTAG ATATAGACATAAGACTCGCAAGGGATAGGGGGATCTTAAAGATTTGAGAAATTCTTTGAAACAAATTTTT AATTAATGAAAATTGAATTGAATAATTCATTGAATTAATTGATTTTTATTGTAAAATTGTGATTTCCCCT TTCAGCAAGTCAATTTTGTTTTGTTGTGTGTGTGTGTGTATATGTATTTGTGTGTGTAAAATGTTTAAAT ATTGCATCAATTATGGAATGGATTTTGAATTTCTTGTAGTTTAATGAAGAGAAATTATGTGATTCTTTTG TTAGGTGAGCCCGGCTAATTTGTCTACCAAAATTAAATTTGAATGTCTGATTTTGACATATCTCTTCTCA AGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds