Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT121745.1 TSA: Strongylocentrotus purpuratus WHL22.534442.1 mRNA sequence TTCTAGTCATTGAGGAGGAGAAGAAGAAAAAGGAGGCTGCCAAGGAAAGGCTGGAAAAGTTTTGGCTTCA GCACGAACCTCTCCTGAAGAAAGCCACCAAGGGCTCCAAGCTTCAGGACATCGCTCGTCTTACCTACACC GTTAAGAATCTGATCGTACCGGATGATCTGAAGGACAATGAGAAGAGAACCCAGTTTGGTACGGACATGT TTGAGGATGTGGCCTGTATGATGTATGATCTGCTGGACTCTGAGAGACAGTACAGGACCTTCCTAGACAA CATGAAACTCATCCAGGTCCCTGTGGTAGAGAAGGACCCTCAAGCGACTAGTGACAGTCAGGCTGCAATC CCTGCTGGGGGTACTGCAGCACAGCAGCCAGGGACAGGCCAAGCAGCTCCAACCGACCCTGCCGCCACCG CCCCCGAGCTCAAGCCCATCGTGGTCTCTGCAGACGTCGATACACGCTACTACAATGAACTGATGGATAG CATTCCCCAAGAGAGTATGAGCATTCCTCTTGTTATGCACTGCATGCTGGAACAGGTTGTCGCTACATCT GAAGACCGGGGTCCACCCAGCGATAAGGACAAGATCCCTCGTGAAGATGGGCTAGACCAGGGACTGGCTG CTCACATTGACAAGATGGCCGCCAAGCTCCATATCACCGATAGCAACAAGGTTGAACAGTCCGAAGAACC ACCAAACGGTGTCGCCTTGCCCAAGCCGCTTGCTCCCTCTATGCCTGAATTCTTCCAGTTTGGTGACGAC ATCTCTCTCCGACTCAAACACCTCCAGTCCATCAACGGTTTCAACGCCATGGAGGCGGAGCTTGCCATGT TGGACTACATCCCTGTTGCTAAGCTACGGGAGTTCCCTCGTCCATCATCTAACATCATCAAGCAACGGGC TGCAAGGTTGCAGGAGTTACTCCATCATCTAAGCTCTGGAGTTGTAGACCCTGCTGAGGTAGACCGTGCC TTCAAGCAGTTTGTGTTTGAGAGTCTGGTTCTGCGGGGGACGGAAGAGGACGGATGTGTCTCACAGAAGG TGGACTCAGAAGGCATCGTCTGGGACGACCCCTATCCTCTCTTCTCCAAGAAAGACAAGGATGAGACCTC GGAGAAGGAGGGAGGAGATGTCCAGACATTGACGGCAGAGAATGTCCAGAAGAATGCAGATGAGTTTGAT GTGGAAGAGACAGGACACCAAACCAACTTGACCAGCACAGGTATCTTGAAGCCAGAAGGTCGTAAGTCAC GTCAGGGTTCGGCCAGTAGCCTCCGATCAGGAAAGAGCACAGTCCACTTTGAGAAAGATGCCTCTGGGTA TCCCATCATCCATCCCAAGGACCCTGCCCCTCCCTCAGACAGCCCTAGGGAGGAGGCCCAGGGCGACGCC CAGAACGAGGAGATAGAGCCGGAGTGCAAGGATGCGGTAATTAGGCCCGGTTCTAGCAAGAGCAACATCA GCATCCATGATGTGATTGGTGATACTCAGCTGCGGAACCTGGATGAGTGGTGTTATGCAGAACACTTTGA GGCTCCTGTGCTCATACAGATTCTTGAGGAGGCGCGTGAGATGTACCCTTTCATGGATACCTACTACCAT AAGAGAGACCACACCCTTCTGGTTGTCATGCACAACCCGGTAGGACCAGAGCTTAAGAACACCCAGCCTT GGGATACCAAACTACATTCTGATGTGGGCTTCAGGAATTACATGGAGCATGTCTCAGAAAATATTGCAGA CTGGGTGAACATCGAGGAGACTAAGTACCAGGCTGAGATGAGACAGAAGGATCTAGCCCGGCAGAGGGAA CTAGCCCTGTCCCGGGCTTCTACCCCAGCCCCATCTAGGCCTTCCAGCTCCAAAAGCAGGAAGGGAAGCG CAAAGAAGTCCAGGTCCAAATCACCAAAAGGACGGCGTAGCGCCAGTCCAGCTCAGACCGTGGACAATCT TGACCCTAACAGCGGTCAGTTCATGAGACCTGGATCCATGAAAGCATGGAAAGTAGAACAAGATAAGATC CGTGAGGAGGAAGAGAAGAAGAGACTAGAGAAGGAGAAGAAGGCCGGCCGCAAGTCAGCCCGGTCTAGGT CTAGATCTGCCTCACCGGTCAAGAAGGGAGAGACTGACGACAAGAAAGACAAGAAGCCTGGCTCGGCCAG TAAGGACGGTAGAGGGAGTGGCAGTAGGAAGGGGGATAGAGATAAGAAGGAGAGTGGTGCAGAACCACAA GAAGATGCCACACCCGAACCTCCAAAGGAACCTGAAAGGGAGTACAAGTTTGTTGGATATGACATGGGTA ACAACATTATTCAGGCCAATGGTAACACAACCACCCTATTTCCAAATGATGGGGGCCAGATTCGCTCGGA ACACACCCAGTTCATCAATGGTCCCAAGTTTGTCAAGACGTCTGTTCTGAAGGATGGGCACGTGTTTGTG GTGCACATCCTCGACCCACGAGACAAGGAGGAGGTTGAGGGGGAAGCCCCCCAGGAGGGTGGGGGAGAGA GCAACAAGGAGAATGTGATGGAGAAAGCTGATCAGGAGACGCAGGAGAAAGACCAAACAGTTGATAAAGA TGGAAAGAAGAAGAAGTCAGACTTACCCCTCTCTAGCTTCGGCTCCTTCACTGCTAACCTGAGCGATGGA ATGGTTGTCTCGTTCAGTAACCATGGTATCGACGGAAAGACTAAGGGAGCAGCTGAAAAGAAGGAGATTG AGGTGGTCATTCCCCCAGCATCGACACCCACCCCAACCCCAGTAGCCCCCTCACCTAAGGGGAAAAGAGG AGGATCAGGAAAGAAGGGTAAGCAACAACAACAACAGCAGCAGCAACAACAAGCGGAGGCAGAGAAACAG GCACAGCTCCTGGCCGAGCAACAACAGAAAGAGGAAGAGGAGAGACGTAAGAGTGTGGTTGAGGCGGAGG CAGCAGCATCAGAACCAGAGATCCCTCCTTTCCAGCAACTCTTTGTCTCCTGCCCAGATGGGCTCCATGT ATCATATATGCTGGAGCCAACTGAAGAAGATGAGGTTTGTGACCCCAATGTCCCAGGTTGCCTCCTGATC AGGCAGAGTTACCTGACAAAGAACAGCAGTGGGCAACCTTGCGATGCTCCAAGAGAAAATCCTGCCTTGC AGGAGATCTCCAGGCTCGTAACAAGCGAGGGCAGTGTTATCAAGATGCTGAGAGATGGCAGCACACAGGT GTTGTTTGCTAACGGTGCTGTAAGCAGCAGCCCAGCGATGCCTTCATCCTCCACCGCTAACCCAATGAGC CCCACCCCTCGGGACCAGTCTCCCCTGCGAGGGGGTAGCTCCCTCAGTCAGAGGAGTGAGAGCCCCTCTA AGAGAAGTGCAAAGGGCAAGATCTCAGACCCCCTGGACCAAGAACAGCCTCTGCCGGAGTCCTGCTCCAG CCCGGAGTGGATAACGACCACACCCACCGGTCAGAGGATAGGGACACGCCCAGACGGAACCACCTTTGAG CCGACTGAGTGCCTCCTCTACAGCGCCACAGACCCCGTGTCTGGAGAGGTTCTTACTACCAGAGAGGATC GGGTCATCACAGTAGAACGTCCAAACAAGATGCTCATTGTTGATCACAATGAGGGGACGCGAATCACTAC CTATTACAAGAAGGTTATCTTTAGACAGCAGTGTGATGAAGCGAATGAAACAGGAGAGATTCCTGTATCA GGTATCAGAGACGTCAAACACGTCAAGGTGGAGTGTGTGGGATATGCAACGGTCATCTTCAACTGTGAAG ACAGTGTTGCCACAACCATATTCGGTAATGGGTCCGAGATCATTGCCATTCCAGATGGTTCCTATGAGAT CCTGCATTGCGAGGGTTCCAGAATGGCTGTTGGCATTGAGGGAACTGTGCGGTATACGCCCAAGGAGGCT GAGAGCGGTGAGCCGAGCTTGATTGGATCGTACACAATGCAGCATAACGATGTGGTTGCTGTAGAGACTT GCGACTCGGATGGAAACCATTTTGGGGTGAAGTGGAATGGAGACATCTACACGTCGCTTGTCCCAAGCGA GGAGCGTAAGGTGTCCCTTGATGGAGAAGGAGAGGAGGAGGAAGCTGAGAAAGTTCTTGGGAAGATGTCT CCTATTCCAAGATTCTTTGTCATCCACCCTGATGGAAGCGGCACAGAGATGCTCCGGCAGCAAGACATTG CGCCTTACGTCCACCAAGCTGGGATGGATCCCAACGTGGCCGTCCTCAAAGACCCTATCCCTGATCACCC TGAGATCAATGGTATCACCATCATGCAGCCTCACACCTCCACCGTAAGCCAGAAGTGGCTCAACCGGTTT GACGAACCCAACATAATCCCAAGGAATCTCCGCTCCCGAGGGTTCGACAAGCTTCCTGCCATGGAGGCCA AGACTCCAGGCCCCAAGTTTGGGACCAAGGTTGGAAAGGGTGTGGCCGTCAACAACGTGCCCCGCCCTCA GCAGCGAGGACCGGTCCCTCAGTGTCCCAAGCAGCTTCAGCTGAGGCAGTTTGTGGCCTACCACCCCATG GAGAAGGAGCTGAGAGGAAAGATGAAGGAGGGACTTGAAGCATATGCCAAGGAGATGAAGGAGAAGATGA TGGTAGCCAAACAGAGGGCCATCAAGGACCCTCGCTCTCAGCAGGAGAGGGTCAAATCAGGAGATCTTCT GGCTCACATACTGGCACAGCTTGAAGATGACATTCCCAAGGAGAGTGATGGAACCCAGCCCACCTTCACT GAAGCACCTCCTGCTAGCCAGGGCCCTACCAGCACCAAGCCTGTAAGACCCCTCAACGTGCAGGCAGAGG ATAATGCAATGACCCTCTACGAGATGTCTACCGCGCCCCCTCCTCAACCCGCTCCTCCGAGACCTAAACC AAAGTACACAGATGCAGACTGGGAGAGGGTCAGGAGAGAGCATGAAGAAGAGAAGGCGTGTCGGGATGCC CTGCTCACCCGGACGGTACCGCCTTACTTTGAGAGTGACTGGGGCAAGGCATTCAAGAGAGCAGAGGAAG CCGTGGCTAACGGTGAGCCTGCCCCAGACATGGAGGCCCTTACCAAAGACTTGCCTGCCAATCGCCCTGG TGTCAGCACGGCAATGAGTCTGCCAAGTACCCCTGCGGACTCCCCTGCTGCCCCCTCTGCTCAGCCAGGT GGTAGCAGCTCTGCCCAGCCAAGCGATATCTCTGAGAGTATATCCCCCATGAAGGCTGCCACCGCAGGGG GGTCAAACCAGACCATCACATATGGGATGCAATCCTCCACTCCATCAGCTCAGCAAGGTCTGGTTCCAGC CAGCCCCTCTGACACACGACCCAACAACCCCACCCCAGGGCATGCTACCGGCCAGGGTACCCCTACTGCT CTTAGACCAACCAACCCCACCCCAGCACATGCTTCACATCCTCAAGGCACTGGAAGACCAGTAAACCCCA CCCCGCAGAGTGCGAGTGAGCACATCCTGCCCAGTGAGACCCCCTCCAGCTATGCCTCATTCCCTGCCCA CCCCTCCACCATACCTGAAATGGCGGAGGAGGGGCCCCTTACCAATCGGTCTGCTATGACAGGAAGTATC TCTCCCGAGCTGAAGACAGCCTTCCAGACCCGGATTAACGATGTCCCCATGGAGTCTCGTCCCAACGTCA TTCCCTCTGCCGGGAGTGATATCGTCCTCACCCGTAGCCTGCTGGTGGATGTCAATGGTGAACCGAGGCA AGACGCCGTCAGACTGCCAGCAGCCATCTTGGGGCAGAAGCCCGGAGCATTGCCTAACAGCAGGTTTGAT GAGCTAGAGGATTCAGTCCGTCGTAAGATCTTCACATCCTCCATCGCTGGAGCGCAGGCCAAGGGTATGG CTGACCTATCACGCATGAGAGGTTTCGAGCTGGTGCCGGGAGAGGTCAACTTTGGCACTCTGCGAGAGGG CTGCACCTACGCCTTCCAGGTCAACCTGAAGAACGTCGGGGTGGACAGCTGTCGGTACAAGGTGCGGCAA CCTCCTCCAGGGACAGGACTACAGGTGGTCTACACTCCGGGACCGGTTGCAGCAGGTATGAAGGCCAAGC TGGAGCTAGTCCTCTATGCCATAGCTGTAGGAGTGGAAGGAGAAAGTGGGCATGGTTCCATAGATCATCA CATTGAGATCACCACGGAAACAGAACTCATGTACCTTCCCGTCTCAGCTGATATCTTGACAGCGGCTGAG TATGATGAGAGGACCCATGTTGGTAGGCAACCCAAGGTGTCACCTGGCATCCGACTGATCGCTACAAGAC CGCCCTCTAGAGAGGGAATCATCAGACCAAGGAAAGACATACCACAACAATCCCAAGAGAATCTGGACAT GTAGCTTCCTAGATGATCACAAGATGATTCAAGATGATCACAAGATGATTCAAGATGATCACAAGATGAT TCAAAATGATCATCCTCATCATCCTCGGACCCACTTGTAGAAATGAAACAGGGAAAGGATAAGAAAAATA GGTCCAGTTAAAGTTTAGAGGACACCCAGTCTACTTGATATTTTGAGCTTTTATCAGCTGAAACAGTTAC TTCGAGACATATCATCTGATCTGTAGAGAATGTGCATTTTAAAAAAGTCCTTTTTAACTTCAGAAGATAC TAGTAGTTTGGTACCAACTCCTGATAACAGTTACATTTTATAGGGGATCAGCAACCCTTTTTTGGAAAAG ATAAACTGTATGCACTTTCAAACTTACATGTATTTTCATAAATGCCTTAACTGCTTGATATAGATTTATA TGTACCAACTGATGTGCTTAAACGAGTGATTAAAGTTGTTACAGTGAGTCTTACATTATAAAGTGACTGG CATGATTGTTACCCCTGCTTAGAAGCAAAGTCACATTCTTCAACATTTGATATGAAATGGGATTGAAGAA AAATATGTCCATATAAATGTAGATGTTATTTATTCTCACAAGTTTTAAATAGGTAATGAATGTGTGATTT TAATAACTACATTATTGAAGATGAAGAAGACAATTAAGAAAACTCGGGATCCTTGAGAATATTTCTCAAA CATGGTTTGTGACATGGCATTGAAACTTGTGTTGTCTTTGTGATACTCTATTATGCAGTGGGAATCATAC TGTATGTATATATTATTCAAATGTTACAGTGAATTTTGTAGTGTACGTCTATTTTCCGTCCCATCTTGCA ATAATTCCTTGCATTTCTGCTTCTATTGTATAAAACTGTATTCCATATGACATTGATTCCATCCTTTTTA TATATTCCTTCTTTTAAGACAAAGAATTTATATTGATTTCAAAGTGTATAATATAACCTATCTTGTATAA TATTGTATTTTGAAAGTGGAGATGTGCTTTAGTGTATTTTGTAAAGAAAGATTTGATTCAACTTATCGAC CTTGAGTTTTTGTATGAAATGACTGTGTAAATAAACTACATTTGGTACATGCATTATGAACTATATGAAA A
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds