Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030994852.1 PREDICTED: Strongylocentrotus purpuratus sperm-associated antigen 17 (LOC586523), transcript variant X2, mRNA AATCACAGTGTGTACCTTGGCAACGACCTGACACTTTTCGTGAAACAGAACAAGAAACCTGCAATTTTTC GAAATATTTAATTATGATGAGTGTTTGAAACAATATAGAACATGTCTAAGAAAAGAGCTAAGAGTGGCGC CGGCTCAGCTGGTGTCTCCCGATGGGAATCTGGCCTTTTATCAACAAATTTCGAAGAGGAGGGTTGGAAA GCCTGCATCTCCTTTCTGATTGGAAATAAACTGGACGATAAAGAGTATGCAAGCATTCTTTCTTCTGCCG TTGATTCCAGGCTCAGGAGACTATTCACTGTCATTCACAAGGATACATTGATGGAAGAGGTCAATGAGCT GGGCAACTCAAAGACCAAGAAAGGCAAAGATGCGCCGCAGTTCTTTGAGATCTGTGAGACGGTCAAGTCG GAGTACCTGGACAAGGGAGAGGAGATCCCGCAAGGTCTCATGGCCAAGCTGCTCAAATGGAAGCTACTTG CTATCAAGGAGAAAGATCTAAAGAGGAGGGAGGAGGAGAAAAAGGCTCTAGAGAACAAGGACGTCAAAGG TGGGAAAGGAGCCAAGGAGGCTGCAGGAGGAAAGAGGGCTCGAAGCAAGTCACCCGCCAAAGGCAAGGGC AAGAAATCTCCTGAGGTCCCCTCTCCCAAGAAGGACTCCAAACTCAAGAAGAGAGGAGAAGAAGATGATG ATAACAAGTATATCGATGACGAACCGGATGATGGTCCGCAGCATTACGTCATCATTGAGGGGTTTGAACA GGCCCCTCTCCTCTCTCTTCTGACTGACCTGGGCATCAATGTCAACTGCATTATCCGTCTCCTAGCAGAG GACTACTCCCTGTTTGAGAAGAGACGCAAGGAGGAGGAGGAGGAGATGGATGAGGATGATCGACCCCTTG AAGTCATTGAGGAGGAGAAGAAGAAAAAGGAGGCTGCCAAGGAAAGGCTGGAAAAGTTTTGGCTTCAGCA CGAACCTCTCCTGAAGAAAGCCACCAAGGGCTCCAAGCTTCAGGACATCGCTCGTCTTACCTACACCGTT AAGAATCTGATCGTACCGGATGATCTGAAGGACAATGAGAAGAGAACCCAGTTTGGTACGGACATGTTTG AGGATGTGGCCTGTATGATGTATGATCTGCTGGACTCTGAGAGACAGTACAGGACCTTCCTAGACAACAT GAAACTCATCCAGGTCCCTGTGGTAGAGAAGGACCCTCAAGCGACTAGTGACAGTCAGGCTGCAATCCCT GCTGGGGGTACTGCAGCACAGCAGCCAGGGACAGGCCAAGCAGCTCCAACCGACCCTGCCGCCACCGCCC CCGAGCTCAAGCCCATCGTGGTCTCTGCAGACGTTGATACACGCTACTACAATGAACTGATGGATAGCAT TCCCCAAGAGAGTATGAGCATTCCTCTTGTTATGCACTGCATGCTGGAACAGGTTGTCGCTACATCTGAA GACCGGGGTCCACCCAGCGATAAGGACAAGATCCCTCGTGAAGATGGGCTAGACCAGGGACTGGCTGCTC ACATTGACAAGATGGCCGCCAAGCTCCATATCACCGATAGCAACAAGGTTGAACAGTCCGAAGAACCACC AAACGGTGTCGCCTTGCCCAAGCCGCTTGCTCCCTCTATGCCTGAATTCTTCCAGTTTGGTGACGACATC TCTCTCCGACTCAAACACCTCCAGTCCATCAACGGTTTCAACGCCATGGAGGCGGAGCTTGCCATGTTGG ACTACATCCCTGTTGCTAAGCTACGGGAGTTCCCTCGTCCATCATCTAACATCATCAAGCAACGGGCTGC AAGGTTGCAGGAGTTACTCCATCATCTAAGCTCTGGAGTTGTAGACCCTGCTGAGGTAGACCGTGCCTTC AAGCAGTTTGTGTTTGAGAGTCTGGTTCTGCGGGGGACGGAAGAGGACGGATGTGTCTCACAGAAGGTGG ACTCAGAAGGCATCGTCTGGGACGACCCCTATCCTCTCTTCTCCAAGAAAGACAAGGATGAGACCTCGGA GAAGGAGGGAGGAGATGTCCAGACATTGACGGCAGAGAATGTCCAGAAGAATGCAGATGAGTTTGATGTG GAAGAGACAGGACACCAAACCAACTTGACCAGCACAGGTATCTTGAAGCCAGAAGGTCGTAAGTCACGTC AGGGTTCGGCCAGTAGCCTCCGATCAGGAAAGAGCACAGGGCGACCATCAAGCGCAGTCCACTTTGAGAA AGATGCCTCTGGGTATCCCATCATCCATCCCAAGGACCCTGCCCCTCCCTCAGACAGCCCTAGGGAGGAG GCCCAGGGCGATGCCCAGAACGAGGAGATAGAGCCGGAGTGCAAGGATGCGGTAATTAGGCCCGGTTCTA GCAAGAGCAACATCAGCATCCATGATGTGATTGGTGATACTCAGCTGCGGAACCTGGATGAGTGGTGTTA TGCAGAACACTTTGAGGCTCCTGTGCTCATACAGATTCTTGAGGAGGCGCGTGAGATGTACCCTTTTATG GATACCTACTACCATAAGAGAGACCACACCCTTCTGGTCGTCATGCACAACCCAGTAGGACCGGAGCTCA AGAACACCCAGCCATGGGACACCAAACTACATTCTGATGTGGGGTTCAGGAATTACATGGAGCATGTCTC AGAAAATATTGCAGACTGGGTGAACATCGAGGAGACTAAGTACCAGGCTGAGATGAGACAGAAGGATCTA GCCCGGCAGAGGGAACTAGCCCTGTCCCGGGCTTCTACCCCAGCCCCATCTAGGCCTTCCAGCTCCAAAA GCAGGAAGGGAAGCGCAAAGAAGTCCAGGTCCAAATCACCAAAAGGACGGCGTAGCGCCAGTCCAGCTCA GACCGTGGACAATCTTGACCCTAACAGCGGTCAGTTCATGAGACCTGGATCCATGAAAGCATGGAAAGTA GAACAAGATAAGATCCGTGAGGAGGAAGAGAAGAAGAGACTAGAGAAGGAGAAGAAGGCCGGCCGCAAGT CAGCCCGGTCTAGGTCTAGATCTGCCTCACCGGTCAAGAAGGGAGAGACTGACGACAAGAAAGACAAGAA GCCTGGCTCGGCCAGTAAGGACGGTAGAGGGAGTGGCAGTAGGAAGGGGGATAGAGATAAGAAGGAGAGT GGTGCAGAACCACAAGAAGATGCCACACCCGAACCTCCAAAGGAACCTGAAAGGGAGTACAAGTTTGTTG GATATGACATGGGTAACAACATTATTCAGGCCAATGGTAACACAACCACCCTATTTCCAAATGATGGGGG CCAGATTCGCTCGGAACACACCCAGTTCATCAATGGTCCCAAGTTTGTCAAGACGTCTGTTCTGAAGGAT GGGCACGTGTTTGTGGTGCACATCCTCGACCCACGAGACAAGGAGGAGGTTGAGGGGGAAGCCCCCCAGG AGGGTGGGGGAGAGAGCAACAAGGAGAATGTGATGGAGAAAGCTGATCAGGAGACGCAGGAGAAAGACCA AACAGTTGATAAAGATGGAAAGAAGAAGAAGTCAGACTTACCCCTCTCTAGCTTCGGCTCCTTCACTGCT AACCTGAGCGATGGAATGGTTGTCTCGTTCAGTAACCATGGTATCGACGGAAAGACTAAGGGAGCAGCTG AAAAGAAGGAGATTGAGGTGGTCATTCCCCCAGCATCGACACCCACCCCAACCCCAGTAGCCCCCTCACC TAAGGGGAAAAGAGGAGGATCAGGAAAGAAGGGTAAGCAACAACAACAACAGCAGCAGCAACAACAAGCG GAGGCAGAGAAACAGGCACAGCTCCTGGCCGAGCAACAACAGAAAGAGGAAGAGGAGAGACGTAAGAGTG TGGTTGAGGCGGAGGCAGCAGCATCAGAACCAGAGATCCCTCCTTTCCAGCAACTCTTTGTCTCCTGCCC AGATGGGCTCCATGTATCATATATGCTGGAGCCAACTGAAGAAGATGAGGTTTGTGACCCCAATGTCCCA GGTTGCCTCCTGATCAGGCAGAGTTACCTGACAAAGAACAGCAGTGGGCAACCTTGCGATGCTCCAAGAG AAAATCCTGCCTTGCAGGAGATCTCCAGGCTCGTAACAAGCGAGGGCAGTGTTATCAAGATGCTGAGAGA TGGCAGCACACAGGTGTTGTTTGCTAACGGTGCTGTAAGCAGCAGCCCAGCGATGCCTTCATCCTCCACC GCTAACCCAATGAGCCCCACCCCTCGGGACCAGTCTCCCCTGCGAGGGGGTAGCTCCCTCAGTCAGAGGA GTGAGAGCCCCTCTAAGAGAAGTGCAAAGGGCAAGATCTCAGACCCCCTGGACCAAGAACAGCCTCTGCC GGAGTCCTGCTCCAGCCCGGAGTGGATAACGACCACACCCACCGGTCAGAGGATAGGGACACGCCCAGAC GGAACCACCTTTGAGCCGACTGAGTGCCTCCTCTACAGCGCCACAGACCCCGTGTCTGGAGAGGTTCTTA CTACCAGAGAGGATCGGGTCATCACAGTAGAACGTCCAAACAAGATGCTCATTGTTGATCACAATGAGGG GACGCGAATCACTACCTATTACAAGAAGGTTATCTTTAGACAGCAGTGTGATGAAGCGAATGAAACAGGA GAGATTCCTGTATCAGGTATCAGAGACGTCAAACACGTCAAGGTGGAGTGTGTGGGATATGCAACGGTCA TCTTCAACTGTGAAGACAGTGTTGCCACAACCATATTCGGTAATGGGTCCGAGATCATTGCCATTCCAGA TGGTTCCTATGAGATCCTGCATTGCGAGGGTTCCAGAATGGCTGTTGGCATTGAGGGAACTGTGCGGTAT ACGCCCAAGGAGGCTGAGAGCGGTGAGCCGAGCTTGATTGGATCGTACACAATGCAGCATAACGATGTGG TTGCTGTAGAGACTTGCGACTCGGATGGAAACCATTTTGGGGTGAAGTGGAATGGAGACATCTACACGTC GCTTGTCCCAAGCGAGGAGCGTAAGGTGTCCCTTGATGGAGAAGGAGAGGAGGAGGAAGCTGAGAAAGTT CTTGGGAAGATGTCTCCTATTCCAAGATTCTTTGTCATCCACCCTGATGGAAGCGGCACAGAGATGCTCC GGCAGCAAGACATTGCGCCTTACGTCCACCAAGCTGGGATGGATCCCAACGTGGCCGTCCTCAAAGACCC TATCCCTGATCACCCTGAGATCAATGGTATCACCATCATGCAGCCTCACACCTCCACCGTAAGCCAGAAG TGGCTCAACCGGTTTGACGAACCCAACATAATCCCAAGGAATCTCCGCTCCCGAGGGTTCGACAAGCTTC CTGCCATGGAGGCCAAGACTCCAGGCCCCAAGTTTGGGACCAAGGTTGGAAAGGGTGTGGCCGTCAACAA CGTGCCCCGCCCTCAGCAGCGAGGACCGGTCCCTCAGTGTCCCAAGCAGCTTCAGCTGAGGCAGTTTGTG GCCTACCACCCCATGGAGAAGGAGCTGAGAGGAAAGATGAAGGAGGGACTTGAAGCATATGCCAAGGAGA TGAAGGAGAAGATGATGGTAGCCAAACAGAGGGCCATCAAGGACCCTCGCTCTCAGCAGGAGAGGGTCAA ATCAGGAGATCTTCTGGCTCACATACTGGCACAGCTTGAAGATGACATTCCCAAGGAGAGTGATGGAACC CAGCCCACCTTCACTGAAGCACCTCCTGCTAGCCAGGGCCCTACCAGCACCAAGCCTGTAAGACCCCTCA ACGTGCAGGCAGAGGATAATGCAATGACCCTCTACGAGATGTCTACCGCGCCCCCTCCTCAACCCGCTCC TCCGAGACCTAAACCAAAGTACACAGATGCAGACTGGGAGAGGGTCAGGAGAGAGCATGAAGAAGAGAAG GCGTGTCGGGATGCCCTGCTCACCCGGACGGTACCGCCTTACTTTGAGAGTGACTGGGGCAAGGCATTCA AGAGAGCAGAGGAAGCCGTGGCTAACGGTGAGCCTGCCCCAGACATGGAGGCCCTTACCAAAGACTTGCC TGCCAATCGCCCTGGTGTCAGCACGGCAATGAGTCTGCCAAGTACCCCTGCGGACTCCCCTGCTGCCCCC TCTGCTCAGCCAGGTGGTAGCAGCTCTGCCCAGCCAAGCGATATCTCTGAGAGTATATCCCCCATGAAGG CTGCCACCGCAGGGGGGTCAAACCAGACCATCACATATGGGATGCAATCCTCCACTCCATCAGCTCAGCA AGGTCTGGTTCCAGCCAGCCCCTCTGACACACGACCCAACAACCCCACCCCAGGGCATGCTACCGGCCAG GGTACCCCTACTGCTCTTAGACCAACCAACCCCACCCCAGCACATGCTTCACATCCTCAAGGCACTGGAA GACCAGTAAACCCCACCCCGCAGAGTGCGAGTGAGCACATCCTGCCCAGTGAGACCCCCTCCAGCTATGC CTCATTCCCTGCCCACCCCTCCACCATACCTGAAATGGCGGAGGAGGGGCCCCTTACCAATCGGTCTGCT ATGACAGGAAGTATCTCTCCCGAGCTGAAGACAGCCTTCCAGACCCGGATTAACGATGTCCCCATGGAGT CTCGTCCCAACGTCATTCCCTCTGCCGGGAGTGATATCGTCCTCACCCGTAGCCTGCTGGTGGATGTCAA TGGTGAACCGAGGCAAGACGCCGTCAGACTGCCAGCAGCCATCTTGGGGCAGAAGCCCGGAGCATTGCCT AACAGCAGGTTTGATGAGCTAGAGGATTCAGTCCGTCGTAAGATCTTCACATCCTCCATCGCTGGAGCGC AGGCCAAGGGTATGGCTGACCTATCACGCATGAGAGGTTTCGAGCTGGTGCCGGGAGAGGTCAACTTTGG CACTCTGCGAGAGGGCTGCACCTACGCCTTCCAGGTCAACCTGAAGAACGTCGGGGTGGACAGCTGTCGG TACAAGGTGCGGCAACCTCCTCCAGGGACAGGACTACAGGTGGTCTACACTCCGGGACCGGTTGCAGCAG GTATGAAGGCCAAGCTGGAGCTAGTCCTCTATGCCATAGCTGTAGGAGTGGAAGGAGAAAGTGGGCATGG TTCCATAGATCATCACATTGAGATCACCACGGAAACAGAACTCATGTACCTTCCCGTCTCAGCTGATATC TTGACAGCGGCTGAGTATGATGAGAGGACCCATGTTGGTAGGCAACCCAAGGTGTCACCTGGCATCCGAC TGATCGCTACAAGACCGCCCTCTAGAGAGGGAATCATCAGACCAAGGAAAGACATACCACAACAATCCCA AGAGAATCTGGACATGTAGCTTCCTAGATGATCACAAGATGATTCAAGATGATCACAAGATGATTCAAGA TGATCACAAGATGATTCAAAATGATCATCCTCATCATCCTCGGACCCACTTGTAGAAATGAAACAGGGAA AGGATAAGAAAAATAGGTCCAGTTAAAGTTTAGAGGACACCCAGTCTACTTGATATTTTGAGCTTTTATC AGCTGAAACAGTTACTTCGAGACATATCATCTGATCTGTAGAGAATGTGCATTTTAAAAAAGTCCTTTTT AACTTCAGAAGATACTAGTAGTTTGGTACCAACTCCTGATAACAGTTACATTTTATAGGGGATCAGCAAC CCTTTTTTGGAAAAGATAAACTGTATGCACTTTCAAACTTACATGTATTTTCATAAATGCCTTAACTGCT TGATATAGATTTATATGTACCAACTGATGTGCTTAAACGAGTGATTAAAGTTGTTACAGTGAGTCTTACA TTATAAAGTGACTGGCATGATTGTTACCCCTGCTTAGAAGCAAAGTCACATTCTTCAACATTTGATATGA AATGGGATTGAAGAAAAATATGTCCATATAAATGTAGATGTTATTTATTCTCACAAGTTTTAAATAGGTA ATGAATGTGTGATTTTAATAACTACATTATTGAAGATGAAGAAGACAATTAAGAAAACTCGGGATCCTTG AGAATATTTCTCAAACATGGTTTGTGACATGGCATTGAAACTTGTGTTGTCTTTGTGATACTCTATTATG CAGTGGGAATCATACTGTATGTATATATTATTCAAATGTTACAGTGAATTTTGTAGTGTACGTCTATTTT CCGTCCCATCTTGCAATAATTCCTTGCATTTCTGCTTCTATTGTATAAAACTGTATTCCATATGACATTG ATTCCATCCTTTTTATATATTCCTTCTTTTAAGACAAAGAATTTATATTGATTTAAAAGTGTATAATATA ACCTATCTTGTATAATATTGTATTTTGAAAGTGGAGATGTGCTTTAGTGTATTTTGTAAAGAAAGATTTG ATTCAACTTATCGACCTTGAGTTTTTGTATGAAATGACTGTGTAAATAAACTACATTTGGTACATGCATT ATGAACTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds