Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030999641.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC583612 (LOC583612), transcript variant X2, mRNA GGGGGAGTGGGTAAAGAATAAAAGACAGAGTTGGTGCCTTCCTTCCAAGTTGAATTTAGACCACAAATAT CTATCGCCCTGAGTCAAGAGGCAACAAGATTTGGCAAGGAACTGTTGGATCCCGCATTTCTTGCTCAGTC CCTGGATATATTCTGTTGAAAGCATAGATTTGATCTTATGCCAGTTGTGATTTATAAAGGAGTAATGTAG GAATCCTTTCCTAGATCCTATAACTGTCATCAGCATTGGGGTTTCTGGAAGCTTGAGCGTGCCAAACAAA ACCTTAGCCAGGAAGTGCCATCTACAGCTGCATTATGGGCACTGTGATGAGTAGTCAGAAGAAAGGTCGG AAGGTGAGAGGAGTGGATCATATAGATATGCCAGCTCAGCTGGAGAAAACAGGACCAGACAGAGCAGATC GGGAGAAAGTAGAACCAGATAAAGGTCCCGCTCCTGAGGGGAATGAATTACAGAAAGAGAAGTTAGACAA GTGGATACTGGAGACTTCTGACAACATGGAGTACCTGCAAAGCAGCGATGACTACGCTACCGAGGAGTGC TTCAAGATCTATGATAACCTACGGAAAGCTAGTACGCTCAAACCAAAGTCCAATCGAATCGTGCTGGCAG AACATCTACTTTCTGTAGGATTTGTGGAGATATTTCCCAGGATGTGGAATGACCTTAACAGCTATCAGAT CTATGTGGATGAACCTGTTCCCAAAGCTAAACAAGCTCTCACCAATCTCAAAAGAATGCTGGGAAGTTAT TGGAACTTTACAGACTGCTCAGATAAAGCCTGCACAGAATTTGGGAAACTGAAATGTTTAGACTTGTTAA TCGAAGGGCTAAAGGATCCCGAACTGAGTGTCGATCGATTGAACGATGACGGAAAACGATATGTCGTTAA GGGAATACTTGGAATCATACATAACTGTTGTAGGAGAAAGTTCAAGAACCGTGCTCGTTGCTACAGTGCC ATTGATAACTTGCAGGAATTAACAACGTCATCGTACCTCATCGTTCGGGCAAAGTCTTTCATAATCCTTG CGTATGTTGCTAAGAAGTCTGAGGTGGAGAAGCTACAAACAAACAATGGGTGTATGAAGTTCATGCTGAA GATGATTGAAGAGGCTCTTGTGTACAAGAATCATGTCACCAAAAAATATGGTTTCTCTGCCTGTGAGACA CTACAAGGCTTGAATCAGTTAGCCATCAATGACGAGAACAAGAAATTAATAGTTGAGCTAGATGGGTTGC TATTGATTGGGAAGATGCTAGGAGAGAAATGCACAGATGAAGAACAAGAGACTGCAGCTGCTGCTATTTG GCAACTGGCGTTTGTTGATGAAAACAAGGAGAAAATAAGACAGGATCAAGAAATCATAAAATCTCTAATG TTCCTGAAGAATAGTGAGAATGCAGCCATCAGAGATGCATGTACCGGTGCATTGTGGGAGATCTATGACA CCAAGGTGCCTCTTGGTGTACACAACGAGAAGTCTGAGAGATCCCTGTCCTCATCTACCATCTCCATCAA CAGTGAGACACCACACATCATGATTAGCTACCAGTGGGACTGTCAGGAGAGGATGATAGAAATCAGGGAT CTACTCCAGAAAGCTGGATTCAACGTCTGGATGGATATTGATAAGATGGCTGGAGACATTTTGGGTGCCA TGGCCCAAGCTGTAGAGAGGTCTGCTCTCGTCCTTGTTTGCATGACTCAGAAGTACTTTGAGAGCTATAA TGGGCGCACAGAAGCGACCTACGCCTACAAACTGAAGAAACCCATCATTCCTTTACAGCTGGAGGAGGGT TACGAGGGGGAAGGCTGGCTGGGGGCTCTCGTTGGTACTCTGCTCTATTACAAGATGTTTTCAAATGAGG TCATCCCGGACAATCTTCCTGGACTCATCAAGGAGATAGGAGACAGAGGCAAGATGCCCAAGAAAGTATC AGTCAAGCAAAATGGAATCGGACCCCAGAAGTCCAGGATCACCACCTCCCCACCACCTCGGCCCGAGGCC CCTATTCTCCCTGCCAAGTCTTACAGCAAGGGATCCTCAGCGAGTGCTATCTCCAGGTGGAGCACGGAGC AAGTCCAGGCCTGGCTGGAGACCAATAACATCCACACGCTCCATACTACACTCTGCAGTCTCAACGGAGA GCAGCTGGTCCAGATGCGCAAGCAGCTTGCCAGAGCTCCAGAGTTCTTTCACAAGAACCTGAAGGAAGAG CTGAATCTGGGATTCATCTCCATCTTGACCCTGACAGCCGCCCTTGATAAGTTGCTGATTTGAAGAGGGC TGGATGCAAGGATTGTAAGGGATGATTCAGATTCAGGGAGAAAAAGCAATTGGACCAAAGTGTGGTCAAG TTGAAGGGGGCTAGGATCCGCAGATGATTCTTGCCAATGTGGAAAGAAAGGCTAGTCATATTGAAGTGAG GCCAGTGAAAAGGGTCAAGGATTTAGAGATAGTTCTTTGCCACTTTTGAAAGAAATATAGATCACTTGAA GGTGTTGTCAAGTTGAAGGGGGTAAGGGCTTGCAGATTATTCATGCCAATCTTTGAAGAGACACTGATCA GATCAAAGTGTGGCCAATTTGAAGGGACCAAAGATGTGCAGATAGTTCTGGTCAATCTTCAAAGGAACAC TGGTCATATCAAAGTGTGGTGAATAAAAAGTGAGTGAGGAATTGAAATGGGTGAAGTTTTGTGAACATTA GGCCAGTGTGAACATTCACTTGTGGTCGAGGGTGAAAAATCTTACTGATCAGGCTGATTGAGATGCTTAG ATGATCAAATTGGCAATGTTTGATGTTTGAACATTGGCATCAAACTTTTGAGATGTGTGTCATATGGATC ACCTAATCCCGACCACACCCAATTGCTTCCTGATCCAGTATTGTTTTTGATAAATTCTTACATGTGACCC TCATACCATGCCTTCATGGTTTTACTGAAATATATGAAAAAGAACCATGCTATTTTGAGATTGGCAAAGA CTAGATTTATGCACATGCTGATAACTTGGCATGGGATGGTATGAGTCACTGTGTTTTACTGATTTTTAGC TTGTGATGAGGTACATTACTCTTCAGGTCATCAACATCAACATGTGAAACCATCGCCAAGTTTATGTCAA GCATGCTACGTGTACACTGCAGGCAATTTACAGAGTGGGTGGCAAGTTACATGCATAAGCATTCATTACT GACCCTAAGTATCTGTATACAGAATAATGATGGAATCATGTATGAATGCCGTGATTAGAGTACCACTTTG ATCTAAAGCCAAGAGAGGATTGGGATGTAGAGTTCATGACACCTTGCGAAATATATATAATCTCTGATGA CTATGAATGCGCTGCAATATATAGATATTTTTATAACTGGATATTTTTCAATTCATCATGTGTATTGTAA GTGACATTCTATGTTTTCATAGGTTGCAGTAATGTGCAATTTTTTTGTCTAGGAAGGAAAAAATGAAACG GAGAATGTGTTCATCATGATTTTTTCACAACCCATGACAGAAACTGTTAATGGTTTACAGGGTACCACCA AAGCATGTATACCAGATGCAATCATGTATTGAGCTTCCAATGTCTTTACTTAGTTTCGTCAGGTATTTTG AAGAAAATCATGAAAAAATAACTTATGTGGAAGAAATAATTCACTCTTGCAATTCTTTACTCGATGTAAT GAATGAATAATACCAAAATGTGTTATTCAAGTACCGTGTGCAGATCATTATATACCCTGTGTGAAGATCC TGTGTAATGAAAATGCTATTTTTAAGCCAACTATTATACTCGGTACATAATCCTATGTTAATAATGCTAA GGTATTATCTAAAGTGGAAGAAATCTACTCTCCAAAAGGCCCTGTCATTAACAAATATTTCAATATTCAA TAGAGTTTAATTTTAAAAGTGCAGGCACTTGTGTTTACATTTACATGTAGTAGAATAAACCGTTATAAGC CAATGATAGTGACTATAATCCCTTGTGCTATCACCACTGCTCTTTATGATATCATAATGTGAAGCAAACC TTGAGTTTTTATGATAGATGAATTGTTTTTGTTGATGTATAATTGCAATCCAAGTTATTGATTCTGATAA TGAGTACCCGTAAGGACAGACTTTTATACGTTTTGTAATAACTATTATTACATGAATGATGGGAAACGGC AATTGTGCTGATCAATGCATGATTGAAAACTGCAATTGTGGTGATCATTGCACAGAATAGTCTGTGTGTT CCATTATCATTTATTTTGGTAGTAATAATCATTGCAAGCTCTGTAATAAGATAACACAAGTATCCATTGC AGAGTTCTTTACTTTTGGCAAATTTTCAGGAAGTTCAGTATTCGAGTCGGAGAGATGAGATGTTGTAAAC CAAACTTTTGGATATTGAATATATACAAAGATCTAGTGCTTGTGGCCGTAAATGAACGACACAATATCTA GTTAACTCGATTAAATCCTGTTCACACATGACACAATAAACGTTCTTTAAAAAAAAATGCTTTAGCAATC TAAAAACAGTTCTACATGGAAAGGAAGAGAAAGCTTACCAGTAGTGCTTAGATTCTTGGACAAGGTGTAT AACCCTAATTTGTCTCTCTCAAACCAGGTTTATTAAATGGGCAATGCTTGGTTAATAATACTTGCAGGAA AAGCAGTAGTTACACCAATGTTGCTGCCCATAGTAAGTGAGACCAAAACATTAGTACTTGTATTATCATT CAAATAATAGAAAAAACACTTTGCTTTGCACAATTACAAAGGCCATTATGGGTACTGTGATCGGCATATT AAGAGATACAGATTTTTGACACGATACATATACATCATTTTATTTTGCTACAACAAAATTTAGAGGCTGT TTCCAATCTTGTCTGAACGAGGCCATAGGTGACAGACAATCATTGTCGGTGGCTCAGGAGAGTTAATCCT ACTTAAACCTGACCGTTGGTTAAGGGTAGAAAAGGAAGTTCATTATGGAAAGACTGTTAAATTAAAGTTA CCGGGTAATGAAAGCTTTCCTGTTAACTGGCAGCCTACTTACTATGAGAGCTGTTAACTGGGCTACTGTC CTATTTTAGGATAATTTGTTAAATTTTTCATATGGTTTCTTTCATCATTTCCTTTCTTGTAACCTAATCA ATTCTGAAGTGTTATTTCATGACACATAGAACATGGAGATGCATGTGCCTATGTATTTTATGAGAATAAC ACAATGAAGGAGAAATGATAGATCTGTAAAGTGCTTTAAGATGTATTGCTAGTATTAAGTGCTTATAAAT CTAGATCATCATCTTCATCTTTACCATAGACATTGCCGTTTTTATTCTTGCCATCTTTTTATCATCAACC TTTCCTTTCTACTCTTCATTTGATTCTACAGCTTCTATATTTATTATTTGTTTTTACTACACTTTGTATT AAAGTACAGATTATTAATAGATTAGTAGTATGTCACCTCTCTGTGTCTTTTGTTAGCTATGATGTCATGC TGGTTTGTGAAATGTTTGATGTTTTTATTCAGGCTTCCAACAGTGACACTAGCGACATAGTAGGTAAAAT ATAAAGTGTATATATGTATACACACATATATATATATAATATATGTAATATGATATATAATATAATATGA ATTAAAATATTTGCTCTTTCTCCTCATTCTTTTTCTCCCATCTCTAGTTCACTCTGCAATATTACAACAG TGTTACATGCTACAAAAGGTTGGTCTTTTTAACAATTAACACTGGCAGGACAGGTTGAATTTGTGCCTTA GTTTGTCATTAAGCAATTAAAGCCTGAAAAGTGATACTGGTATTAAATGTACGAAATCATTCTGTCAATA ATGAATTCTCAATATAATGACGTAAACACTCGATGATGAAAAGAAGACACCATTATTTTAATATTTCATT AACTTTCAATGGATAGTCCAAAACCTGTTGTAAACCATTTCTATTATTAGTAAGTGGACAAGTGTGTATA CGTACAGCATCATAGAGTATGAAATATTCAGTCTTTCATTAATAATAACCATTTGTGTTGAAAAGATTCT ACATGTATTTTTGTAAATAAATTTTTTATTCACTATTGTGCAATAGCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds