Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT106451.1 TSA: Strongylocentrotus purpuratus WHL22.131218.0 mRNA sequence GGCCTAGTGGGTTTTGAGGCAGGCCGTCTGGTCCCATGCGTTTTCTGAGGGCGCTGCTTCGAGCCATGTT GGTGGGGGTACGAAAGGCTGTCCTGAGGGACATACGGGCGTGCATCAGCACCCAGCTCCTGGTCATCCTC GGGAGCGTCATGATGGTGGTCATCGTCGTCCGCCAGATGCAGGGCCCCATGGACGTGGTCATCGAGGAGC AGATCGTCCGGCCAAAGGATATGTTTGCGACGATGACCCCGCAGGACACAGAACCAGAAGTCATATTCAA GTCTGGAATGGGCAAATATAACACATCAAGAATACCTGCCATTGTCCACCACAAAAACATGTTCCTCGCA TTCTGCGAAGCCCGTAAAGACACGAGCCACGACATCGGTAATATCCACATCGTCTTACGGAGAGGGAAGA GAACAGATTGGAAAGTCGAATGGGGACAGTTACAGGTCGTTGCATCGCGGCATGGTTACAGGGCCATGAA CCCAGTGCCGATCGTGGACAAAGTCCTAGACGTGATTCTGCTGGTGTACCAGCTGATCCCCGCCTGGGTC AGCCAATGGAAGCTGGTCCGAGATGGCGTCTACAACCAATACCTCATGGTTTCTAGGAGTTTTGATAATG GAGAGACGTGGACGATAGCCAAAGATATCACTGCTTCAACACTGGGACAAATGAGACCTCCCCCTGCTCT CTATGCACCAGGACCAGGACATGGTATTCAGCTGAAATCAGGAAGGCTTTTAGTGGCTGGAAATTATTTT GTGAAAGATGAGGTTGGACCCTTATTACATTATCTAGATAATTTTCACAACACCACCAACTATGCCAATG TGATCGCTAGCGATGACAACGGAGAGACGTGGTTCTTAGGGGGCAGGATACCCTTCGGGGTGGACCCCTT CTGGAGGCCCATACATGGGAATGAAGCTACAGCAGTAGAAATAGACAAGGGACAGGTATGTTTAAATGGC AGAACCCTTCATGCTGACTTGACGCGGGTCGTCTCTTTCAGCGACAACGGGGGTGAGACCTTCGGGGCGG GGCGTCTAGCCAGGGAGCTCGTGGAACCGGGATACAAGCTCACCGATGATAACTTTGTCATCCCATCAAA GGCTGGTGGCTGCCAGGCCAGCATGATAGGGTTCCCAGCACCCCGCCCCTACGTCACCGACTCCAACACG TGGGTCCTCTTCTCCAACCCCGCCTCGCCCAAGTTCCGCGAGCGCCTCTCTGTACGCCTCAGCAAAGACG GCTGCAAGTCGTGGAGTCCCCCGTGGAACGTCTTCTCAAATTTCTCCGGATATTCCGACTTAACGTACTT TGAGATGCGAAACCCGGTCACGGGACTCAGGTCGCAAAATTTTGCCGTTTTATTTGAAGCGGGGAACGTC ACGTCGCATGACGCTTTGATGTTCAAAATGTTCAATATAGAATCTCTATTAAGTGGACTGGATAAAGGGA AATTAAAATTTGATCCGGCGGTATGAGCTCGTTCAATACTCTGTAGGTAGAGATTTATTTAAGCTTGGTT CTCTATGAGAATGTTTTCTAGTGTATGAACTCAATTAGACGTGATGTGTATATTTAACTCAGGCAGCCGT ACTTATTCCCTTCTCAGACCACACTCGACATGGTAAACCGATGACCTCACATTTGCTCCTGTGACAATTG CTCCAGGTTTATTTCTTTAAAGGTTTAGAGTTAGGCTTAGGATTGCACTTGGGTTTTAGGTTTGGTTTAG GGTCATGGTTAGGTATAGTGCTGCGTCCAGGGTTCATAAAGTTCAGAGTATGATCAGTGTAAGAAATTGA CATGGAGCGATTGCCCCAGGACCAAGTGTCCTGTGACAAATGCTCTGGCCTTTATTTCATCAAAAGCATA GGGTTAACCGTTAGGGTTATGTTTAGTGTTACATGGCATTAGGTATCGTGTTTTGTCCAGAGATGAAGTT AAGAACTTGGTCAGTGTTAAGAATTTGGTCAGTATAGGAAATGGCATGGAGCAATTGTGGCTGGACTAAA GTGCAATATACCATCTACATTTTTGAAAAACAGTGCTGCAGCTAAATGAGAAACATACAGAGAATGCAGG GCCTTCATTGTATGCAGCGCGACACTTTTTCAATCCAACTAGCCATTCATTTACTTGTCGTTGTCGTGGT GGTGGTCCTATAAGTTATGACTGACCCTTTGTGAACATGTTGACGAGGATTCTTTAGAGTGTTCTGTCAT GAGTCATAAAAAGAGCTTAGATAAGCGATAGGCCTGTTAAAGGGATCCGGTAACTCTGTCTTAGATCCTT TTAAAAAATCCTTGATTCAGCTCATGCTGCAATGATAATTATAAACCTTTAGGTCAGTTAGGAACCCCAT GACTTTTACAAGCCGAATGCCTGTCTGATCATCAAGATATCTTTGATTGAAAATCGAAATCAAATTTTGA GTTTGCCAAACGGTTTTCATAATACTACAGTCTATTGGGGAAAACAAGTATGGTAAAACCTGTCTCAAAG GTTTTTAAAAAAATTGAGGCATTTCTTGATCATTTTGAAGCGCAATGTTTGTTAGGGCTTCAATATAACA CCATATCACAGACACTGATAACACGTAGGGCCGTGCATCTCAGATTTAACATTGTTAAACGATCCCTTTA AAGGTTGGTTCAGATATGATGATGCAAAACAGTGGCAGATTTTTGTTAAGTTACAGTGTACCTCAAGTGC GATACACTTCCCATTTCTGTATCTTGTAACGCAGAGCCAAGTGAAAAAACTTTTTTGTACGCAGTTACCG TTCATTTACACGTACACGAAAAATGGCAGCGTTTTGGGGGCGTTTACAGCACCATATCTGAACGAGCCTT AACCTATCTATTACTAATGAGATGGTTTTTATTTTGCTGCAGCAGTTTCTTTGAGGCTTTTTACCGTTCC GTGTCTGACCAAAGCTTTGGAATACTTTTCTCTTCTGATTGGACAAAACTTATCTCTGTGAACTTTCAGA CTATATTTCCTGAAGCGTTCTTGTTCATTGTCAGTGCGTATTAAAAGGTATGAGCTGAAATATATGAGGG TAATCATTGATTGCTATAAGCATGTACGTGTAGATAGGTGGGAAAGAATATTTATTGAGAGTCATTGGTT TTATAATCAGGACTGCAACTATTTAATCAGTATCTAAATTTTGTATCGTACTGGAACATTGTTGTTTATT GTGTTGTTGAATTTTATAATTGGCCCGAGTTCATGAAGGAGTAGGAGATTTAAAGCGATACTGAACTGAT GAAGTTTGCAAAGCGCCATCTCAAGGTCAACTTGCCAACAGTGCGTATAAACCCAGGACCTAATTTCCAC TTTGCAGACGGAGGACTCGATGCAAGAACGAACAGCACATCTAGGGAAGCAGCGAGTAACGGGACCATAC TGCCACAGCTAACTCGAGATGGCGGCAGAGGGCATTTGGCGGTCGTGCACTATGGCTTTAAACCATGGTC TTTAAATAAAATTCATATCGGTGTGTGGTCTTTCCATTGGAAATGAGGACGTGCACTTTAATACTACGCT TTATATTGAGGTTCAAACTATGGGTTTAAGTATCGACCTCCTTTGTGACTTATGGCCATATCAAGTGTTT CAAATGCTGTCTGTTCTTCTTTTTGTTCTTGTATTTTGTTGTAATGTGGTGTGGATCGATGTAAATATGA TTTACATTCAGTGATCCGTTTCACAAAGCCTTTTTTCAATGACAAATGATAAAAATCAGTGACAAATCTG CTAATAACCAATCAAAAGCAAGGATTTCAGTAGCTTATAACAAAAACTGTCATTTGTCACTGATGACAAG TTTTGTGAAACACCCCCCAGAATCATTCTCTATATTCATTCCAATCCCTTATGTTTATTGTGCTTCGCTG TAAATACAGGCCACTGTTGAGTGTATTCTAGACTCTTATTCTTCATCTTAATGCAATGTTTCTTGATACA GTGAAACCTGTGTATTAAGGCCACTCCAGGGAGAAAAGAAAGCAGTCCTTACCTCATCATGAAACCTGTC TATAAAGACTACTCAATTGATTCAAGGGAGACAAGAAAAATGCCCTCTATAGGCAAGGTGGTCTTTATGT ACAGGTTCCTTTAATACATGTTTTAATGAGATACATGGCATTGGGGAAACAAAAAACATGATCTTTATAG ACAGGTGGTCTTTATCTGTACGCATAGCTTCTTTTAATACTGTACGTACATGTGTAATAATGTTAAAACA CTGCTAGTTAGTAACAAAATATGTGTTCCTTATAGACAGGTGTTCTTTATCTGTACGCATAGCTTCTTTT AATACTGTACGTACATGTGTAATAATTTTAAAACACTGCTAGTGAGAAACAAAAAGTTTGGTCCTTATAG GCAAGTCCTGATTAGTTGGGTCTGTTTTCAAGGTACGATTTAAAATTCTATGTTAAAACTTTGGTGAAAA TTTGGTGTAAAGTGTATGGTACATTGTAGAAATGCCTGGCTGGAATGCTCCCGAGGGAGTGGAGTTTGTG CACACGTTGTGTGCGGGCAAGCACTGAATCCAATGACCGGGGTAATAGTATATTTGTAAAACTCTAGAGA CATTCGTATTAAGCGCTATATAAAAATTAAAATATTATTATTATTATTATTATTCAGCGACAGTCGGGAA ACAGATAAAGTGTGAAGGAAGGAATTTAGTTCAAGGCCGGGTCGCAAATCTGCTCATATTGAATTTTAGA ACACTAACGTCAATATCACATGGTAATACATGTACATGGATGAACGTACAGTATATATGTACAGCTAACA TCTAACTTTCAGTCTTAAATATATATATATATATATATATACGAAAAACACAAAAACATATCAAATTTAC AAGAAGTACAAATAATTTAGTTGTTAACTGTGAGTATAGCCAGAGTATTTGTTTGGGGTGTATTAAACAT GTATGCTTGGGCAATTAGATGTACTTAATTGCATAAGTATTGTATTAACTGACTGGAAGTTTTCGGCTTC AGTTGAAATCTGAACAACTGATGAATGCATGGTGCTAGTGCATGTATGTCTCTATCCGATTACATTAACA AAACCTCTGATATTAAGATCATTATCAATGCCGCCGCCATCATTATGACTGTTATATTGATCATCATATC GATGTGATTGTTTTCATCATCATCATCGTCATCACTAGCATCATCATCATCACAATCATCATCACCATTA TCTTCATCGTCATCATCATCATTATCTTCATCGTCATTATCATCACAATCATCATCATCATCATCACAAT CATCATCACCATTATCTTCATCGTCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds