Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041603970.1 PREDICTED: Lytechinus variegatus host cell factor 1-like (LOC121411311), mRNA GGAATATTGCATTGTGGGAAAGAGACAAAATGGCGGCTCCCATACTAAAATGGAAGCGTGTGACAAATAC GACTGGTCCAAGCCCCCGACCTCGCCATGGACATCGAGCCGTCGCAATCAAAGACCTTATGGTAGTCTTC GGCGGTGGGAATGAGGGGATCGTGGATGAACTCCACGTTTACAATACAGCTACTAATCAGTGGTTTGTAC CAGCAGTAAGGGGGGATATCCCTCCAGGCTGTGCAGCTTATGGCTTTGTCAGTGATGGCACCCGTCTCTT CATATTTGGGGGAATGGTGGAGTATGGAAAGTATTCAAATGAGCTTTATGAACTCCAAGCTAGTAGATGG GAATGGAAGCGACTCAAGCCCAAGACTGCCAAGAGTGCACCCCCTCCATGCCCTAGACTTGGTCACACAT TCACCATGCTTGGCAGCAAAGCATACCTCTTTGGAGGACTTGCTAATGATAGTGATGATCCAAAGAATAA TATACCTAGGTATCTTAATGATCTCTACTCACTTGAGCTGAGATCAGGCTACTCTAATATGATATGGGAT ATACCCCTTACCACAGGACCTTCCCCTCCACCTAGAGAATCACATACCTGTGTAGGCTATGCTCCAAAAG ATGGCACTTTTAATCGACTCATTGTGTATGGTGGTATGAGCGGTTGTCGGCTCGGGGACCTTTGGCAACT CAATATGGATACACTCACGTGGGTCAAACCTGAACTCAATGGACCCAACCCTCTACCAAGGAGCTTGCAC TCTGCCACGGTCATTGGAAACAGAATGTTTGTGTTTGGTGGCTGGGTACCCCTTGTGATGGACGATGTCA AAGTAGCAGCTCATGAAAAGGAATGGAAGTGTACCAATACTCTCGCTTCTCTCAATTTAGCAACCCATAC ATGGGAGCCACTTGCCATGGAGGTGTTTGAGGAGGCTGTTCCCAGGGCTAGGGCTGGACATTGCTCCGTT GCTATCCATACTAGACTCTATGTATGGAGTGGAAGGGATGGATACCGCAAGGCATGGAATAACCAGGTGT GCTGCAAAGATCTTTGGTTCTTAGAGACTGAGAAACCGATGGCCCCAGGGAGGGTCCAGCTGGTACGAGC TAGCACCACCACCCTAGAAGTATCATGGGGTGCTGTAGTTACAGCTGATGCCTATTTACTGCAGCTTCAG AAGTATGACATGCCCCCTACCTCAAGTGCAGCTTTACCCACTGGGGGTAGCGCTGCTCCCGCTAAACCAA TCCAATCACCTATCAAAACACAAGCGACCACCACGTTTCGGGTGGTGGCTCCAGGCTCCTCGGCCACTTG CCCTATTCAGTTGATCAAAAATACACCAGGAGTTAAGATTCAGAGCCCGACCTCTTTGTCTGGGTCAGCA GGGGCCAGTTCACTCATTAAACTCAGCAAGCCTACTCCTGGTGTCCAGTCACAGAACACCCTGAGTGGTA TCGTAGCTCTTGCCGAGGCTGCTGCAGGGACGCAGAAGATGACCAGTACCACTGCAGTCTCACCAACCCC CAACAAACCACTCCTAACCACAGGAGGGTCTAACTTGACCCTAGTGACCCGTACCATGCCAGGAGGGGTC AGTGTCACATTACCACAAGGGGTCAAGCTGACCACCGCAGCAGGAGGCGGACTCAAGATGGCCACAGCTG GTGGCAAACCTCAGGTGGTATCGGCTATGGTTTCAGGCACCACTAAGACGGTTACTCTCGTGCAGAATGC TGGTGCAACCAAGACAGGTAGTGTAGGTCCAGGTACTACCATCGTCAAGCTCGTCTCAACCACCCAGGCT GGAGGCAAACCTACGACCATCATTACCCCTATCAGCCAGGCAGGGTTGAAAGGTCAACCCACCATACTGG GCATTAGTAGCATCACAGCAGGTCAGCAAGGAAAGAGTATCATCAAGACCATTCCAGTTGGTAAAGCAGG TGTAGCCAATACTGCAACCAGCAAGACACCCACCATTGTTACAGTAACCACCAAGATGTTGACTGGAGCT ACGGGTACTCCTACCAAGTTTATCACAACCGGAGGGGTTGGTGGTAAGCAACAGAAGATAGTCTTAACCA CCCAAGCAGGTGCCTCTCCTACCATCCTATCAGGAACACTCAAAGGTCTTGGTGCAGGGAATTCCCCCAT CACCATCATCCGTGCTGTAGCCCCCCAGGGTTCCTCCCCCGGGGCCAGCGGTCAGGTGGCAGGTAACACT ATTCAGATCATTACCAAGGGTGGTGCTAAGAGTACCCTCAACCAGGCCAGTGCTGCTAATCTACTCAAAT CACTGTCCACCTCTCAAGGCCTGACATCACCACTTACTATCACCACCACTGCTAATTCATCTGGAGTCAC AACTAAGCTGGTCACCATTCCTATTTCAGCCCTGACGGGGGCAGCATCCACCAGCGTTTCCCCTGCCATT AACACAGTCACTTCTACAGTAGCACAGGTTGCCTCCAACACAGCGGCTGTGCAGAAAACTACTTCCCCTG TGGCATTGAGCACTGTAAGTACAGCACAGACTACACTTATATCAACGGTAGGCACCAAACCTACAGTCAG CTCACCAAGTACAGATCAACAGAAGGTGGCTGAAGATTCAACAGAAACGAAACCTACACCAACAGAAGAA AGCAAGGATAGTTCAGAAGCACAACCAACGACAGAAACGACGACGGCACCAGCTGCTGATCCAGCTCCCA CAACACAAGAGGCTGCAACCCCTGCCACTACAGAAGCATCAGAGGGTGATGATGCGACAAAGAAAGAAGA GAAGCCTTCAGAACCAGCAGAGTCACAACAAAAAGAACAACAACCGGAAGAACATCCGAAGGTGGAACAA CCAGAAGCCACCCCCATGGAAACAGACCCCTCCCCCGCCCCTGGTACAGGGATACCGGCAGAGTCTACGG ATACCACCAAGACCAACGGGGCCCCTGCTGAAGAGACCAAGGATAAGGCCTTGGATAATGGAGCTATGGG AGAAGAGCAGATGGATACCAAGGATGCCAACCAAGATGCAGATTCAGATCCAAAGTCTATTGCCATGACG ATGGCATCCCTTGCTAATTCAGCTGGTCCTCCAGTGATGACGGCTAAACCTGTCACAAATGGACTTGACG CCAAATCGGAGGATGGCAAGTCAGCGATAGGCCAAGCCATTCAGCTTGCCAAGAAAGATGGCAACCAGTG GTATGATGTAGGAATAGTCAAGTCTACCACCACGACAGTAGCACACTATCACTTACCATCAGAGATTATC AACAGAAATGAAGATGATATCGATGTTGTGAGTGTACCAGATCACAGTTTCCTCAAGAAGCAGGAGCTTC ACCCAGGCACGGCTTATAAATTCAGGGTAGCTGGTATCAACGCCTGTGGGAGGGGTCCATGGAGTGAGAT CTCTGCATTCAAGACATGTCTGCCTGGGTTCCCAGGAGCACCTTCGGCTATTAGAATCAGCAAGAGTCCT GATGGAGCCCACCTATCATGGGAGCCTCCGGCAAACACCAATGGTGAGATCCAGGAGTATTCTGTCTACC TTGCCGTACGTAGCACCATGGGCGGTGCCTCAGGAGATGCCAAGCCTGCTACCCCAGCCCAGCTAGCCTT TGTCCGGGTGTACTGCGGGCCCAATCCATCCTGTGTCGTGAGCTCAGCCAACCTGGCAGCAGCTCACATC GACTGCACCAGCAAACCTGCTATCATTTTCAGAATCGCTGCACGTAATGTCAAGGGGTATGGACCAGCCA CTCAGGTAAGATGGCTTCAAGACAATCAAACTGCTGCTAAACCTACAACTACTGTCGCTGCCAAGAGACC AGCATCCTCTCAAGAAAGTCCAATGGTGAAGAAGGTGAAATCAGAAAGTGAAGGAGATTCCAAAACGGCA TAAAAGGAAGGAAAATAATACTGTATCACCAGAACAAACAGCTGAATTCAAGCATGGAAGCATGGTGGAA AGCACATTTATTGCACAAGAAAATGAATTTCTATGAAGAGACATTGACCTTTTGACCTTTCTTGAACAAA TTAGTGAATGAGAGTCATCAAAGTCAACATATTACCTGCCCAAGTCTACAATGTTTTAACCTACTTTGTG CTTTGTTATTATTTTCTGTTCAGGGCAAAGTTAGATAAAGGTGAATGTATTTGATGCAAACCGGAGACAG TAGATGTATCCTTTGACTTTTGCATTCAGCTAAATTTGATGTGATTGCAAAAATGGAGTTACAGTAAACA TTGAATTGCATGGAATTGGATGGGATTTTCTTTTTAAAGCAAGCCTACTCGTTTAATAAGATTTGCAGTT GGAGCTGATTTCCTATCTAATTGGGTTATGGAGAAAAAAATGAATATGGCATTACTTATAATTATTAATG ATAATAGAGGCTGCTCATACACCTTTACATTCCAATGGTCTCACATATAAACCAACAGGGTGAAAAGTAG CACTATCATTGAGAAAGAAATCAAAAGAATGAAAACAGGCCCAGTTCTTTTTTTCTTTTTATTTTCATAT CACTTACTACCCAGAAAGTTAGAAGTTGTCCCAAAAGTGTTGTCCCAAACAAAGTGAAATTGCTTGAATG CTATGTAAAATTGCAGACGCGAAGCAGACGAATGGATTGTATATTCGACATGGACTAGGCAGTTGGAGTG CACGAGTGATACACAAAGCAAGATGTGGGCAGCCCTTCCAAAGTATCTAATTCATGACAAATGCACAATC TTTGTGCTGCCCGATCGTGTATGCATGGAATTTTATGCAATTTATTATTGATTCCAGTACAAACAAACAA GGTCATGGAGCTCAAGCCAGCAAGCAGAGCAAGAGTTTAGTTTGTTCATCAAGCTGATAGCTGCGCTTTA TGGTCAGGATTGATCGGGCTACCTCATGCTCAAGCAATGACAAGTGCAACATGCAATTCAGACTGGATAC ATGACTGGGTATATTATTTTGCTTGAGTGAGTTGCGCTTCTTGCTCACTTCATCTGTCTGAAGTAAGATT ACTTGTTCATTATCAAGTTCATTTAGCATGAAAAACAAATCACTCACTGAAAACAATTTTTGTTTGGTAC ATCTTACGCCAACATCGAATGTCTAACTTCGACTTTCAGCGCCAGTGCAAATTTGTATAATTCTATGTCG CAAACAGGCAATCTCTGCCGGCATTTCGCATTGGCTGCCAAAATGCATTTCATTGACAAGCTTGGTGACA AAAGCGTTGTCGATGACAGCACTAGTGAAAAGAACATAAATAGTACAGTCACACCTATGAAACTGCATAA ATATGACCAATATTCAGTGAAGTAATAAAGGGACTTCCTATAGTATGCAGTAATTGAATTCTTGATTTAG GATGAATGAAGGAAATATTTGGAACGTGGCTCGGCCGACAAGTGTCCCACAGAGCTCTATCCAGGATTGT CTCACTAGTGATTGCACCATGGACCTACTAGTTGGTCAATGATTGCACCAACTGACAGAGTTTATTACAG TTTACAGTCTGATATCTCAAGCCTCCTCTAAGATACCGATTCACCACTTTGGAAATAAATAACAATAGAA TTGAATTTCAGAGTTATTTACAGTCAATTCAAATCTGGCAGATTAAAAAGTGATATGAATAATAATATGA AGTACATCTGGAGTAAAGGCAAAATTGATTTCAAATCTCAAAACTATTTTCATCTCATGTACATTTGGAA CAAAATCTGCATTTTCTCAAAGAAGGAGGCTTATGACATTCTCTTTGTATGGCCATTCAGAACTTTAACA AGCATCTATCGTGGGTTGTATCCAATTTAGATAACTGGTGATGATAAAGGCATAGAGTGCTCTAGGCGAT GAAGAATAAAAATCGTATACAAGTTTAAAGTGGATTTGATATTTGATAATCAATTTGAAAACAGTAAGGC AGCTTTGAGGAATGAGAGTCACATTAAATTTTGCTGAATGAAAAATGAAAAGCGCTCAACGGGATGTCTT TAATTAAAGGTAACAATGCTTTAGATTTTCACACTCTTTTTTTTTTTAATTGTTCATACAAAGTTATCCT GTTCATGATTTTATAGTATATTTGGTGCATTGTTTGCATTATTGTTTCAGTTGAGTCATAATGTACATGT TTTAGGTGGCATTGTCTAATATATATATTTATTTTGTATGATATTGTTATGTTGGAGGAGAAAAGAACAG ATTGTACATGAAGAAGTTTTTAATTTGTTGTAAACAAAAAATTTCAGATAAGTAAATGATTTTTGAGTGA GGAAATGTGTATCACATGTATGTAAAAAGAGGAGTTCTTGTTTTATTCTCATAGATGAAATTGTATTGAG ATATGGTAAGAATTTTTTGAAGAGTAATGAATTGGCAAGCATTGACACAATCTCTCATGAAAAGGAATTT ACAGATTTTAGAGTGAAGCACTCCGTATTAAACTTCTTTTCCTCACATTCTTTCATATTCTGTCGGAAAC TGCTTAAGTGCCATTGGTCGAATTGCAAAAGGGCATTTGATGATCGTGATAATAAGGGTAATCATAACAT ATGAAAGCAGAGCCAATTAGCATTGGCCATTTAATGTGTGGAAAGTAAGATGTTTGTCTTTAAGACGAGT TAGCTTGTGAGGGCTGTGGAGGTAATGGATGTATTATTGTAAACCATGAGGCACGGTTCTGTTTATCATG GTGAAAGATAGCGAAATAGCTGATTGATGGGGAGGAAACAATTATAGGCTGAAATCCCTCCTTTTTGAAA ATAGCAATTTCACTGACATTGTTTTCACCAATACAGCTATTTCTTATCATTAGCATGGTTTTCAATAAGG GACACCTGATATTCTTTTCTTTGAATTTCAAAAGCAAAGTCTCATAGCATCACAAAACTATCTACCTTTC CAATTTTCCAATAATGTTCACCTAATTCTCTGAAATTTCAGATACATGTAGTGACAGTATAGCCAAAAAT GTTATTTTCCATAGAGTCATGCTCATCGCAACAAGTTACTGGGTGCTTGAATCATATATATGTTAGATTA AATAGGAGAGGATATCACTGGTTCAGTATTTGACAACTGAAGTTAAGACTGCTCTGAGAGTGTCTTGTAA TATATTGTGTATATTTCATTTGATGTTGATGATTTACATTCACTGTATGGTTATCTAATATCCTTATCTC TATAATTTGCATGAATCGGGAGGCATGTTGTCATATCAATATGGATAGTAGTAAACAAATGTGTAATCTG TATCATCAAATTGTAATTATATCTTGGAGAAATATTGCTTCGATTTCATTTCTTGTCTGGCCTGCAGGTT CAGCAAGAAATAGATTTGTAAGCTTTGTCATTATTTGTCCAAGGGCTGTAAATTTGGCTTTTCTTTCCAA TATTGATTTTTTTATGGATTGTGAATTACAGGTATATGAAATAGAGAAATTTAATAGAAAGAAATTTAGA GTTGGTGAAAGGATGACCTAAATTTCTGATTTTATTCAGATTGCAAAAAATACAAATGAAATATGTTGAT TGTTAGGATAAAGAAATTTAGAAAATTAGAAAGAGAATGTGTGCGTGTGTGGGAGGAAAGATACGAGAGT GAGAGAGAGAAAGAGGTAGTGTGTGAGAGAAAGATCAATATATTAATGTTTTCTTAGAGCTTTGTAAATA CGCAAATAGATTTGAGAAATGGCCTTAGTTTCGAAGTGACTATTATTCACCAGACTGTTGATATTTTAAG GGGAGTTTAGCTTTTAATTTTTCAGGGATTTTCATGTTTTAACCAGCTCTCCACTTGGGTATCAGAACCT GTACGAACGTCCAAAGAGATTTTTTTTTCTTGTAAAATAGTAAGCAAACTGTCAAGTAGTATGTTTACAA TGCCCTCACCGCATCCATCATTGATACATGACAGAAATCCTCTATCAATTGGGTAATTTGATATTGTTTC TTTTTTGTTCACCTTCACCTCATACGAGATGTGATTGACTTTGGGCATATGATGGTAAGTTTCGGAAGGG GCATGCAAAGCACATCAATAACCTGTATTGTTGTGAGAAAGAATATTAGAAATAAACATTCCATGAAGGT GTATTGTATCTTCATATAATTTGATTTCTTTCAGGCCTGTGTGACTCTCACAATCTTCTGAACAGACGAG GATAACCAGCCTCCAATGAATTTATAAGGGCTCTCAATAGCATATCTTTTGTTGAAAGACAGCTGACATA AAAGTTTCCACTGGACAGTCGGCAACAGCAAATGTTTTCCAATTTTGGCTGTATAATATCTTTACCCTCA AAGGTATTGTGCAAATGATGGTTTGACCTAGGCAAATTGAAGGAAAATGTCTGTATTGTATTTCAGCTTT GGACCATCTGAACCAAGTAGATCAGCACAAACATTCCAAATTATCTATTCGGCTGCTTCAGAAGGAGAAA GAATAATAATTGTAGGGGTTTTGAAAGGCCTACATCATACATGGGGTTTGATCAGCACTCGTATCAAGTT TATCTCCGAATTGTTCTTTTAAGGTGTATTTTTCAAAGAAAACTCTTTTTTAAATGTCAGGAATTTAATG ATTGTATGATGAATTTACGTCCCCACTTCTATTTGAGAAAAAAGCTCTTAATGTTCATAAGTTTTGATTG GCTGACTGTTGCTTTGGTAACTGTCAAAGACAACTTACCCTTGCTGATAGTCATCATGAATGGTGCCCTG GTTTCGCCTATTGATATGTACAAAATACTTGTGGAATATTCTTTTAGTTCTTGCAGAGTTGGGGTTATCA TACAGAAATGTTTTAAAAGTAAATATGTTTCCTTACTGTTTGAGGTAGTGCTTCCAAATCAATACAATAT CTTAGTAAATGAGATAAATGCTTCTTATAGTGAGCACATATATTTCTTTCTTTCCTTTTTATGGGGGTGA CTGTTAAATGATAAAGTCCAACTTGTATGGGTGCTTGTGTAGTCAATGATAACAGTAGAAGGTATACAGA AGGGAAAATATGTCTGGTTGTCATTCAAAACTAAAGTTTTGATTTTTCTTTTCTTTTGTTTGATGTTTAA ATGTTGTAAAGCTGCATTTTTGTCCTGTACAAAGAAATTGTTTCAGTAATGCAGGTTATGTACATTGTAA ATATCACCCTTATTATTTTTGTGTGCATGTTTGTCCTGTAGCGCTCCTTTTTTCCGTGTACTTCTTAGAA TGAACAATAAAAAAAATTTGTATATTTCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds