Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT120161.1 TSA: Strongylocentrotus purpuratus WHL22.126954.1 mRNA sequence CTGGCATCCCTAGCCCCTAGCTCTGGCGTACTGCGATCCCATACATACAGTACCGGTATATACATGCACA GTACACTTATTCTTTGCAGCGAGATATCTTGCTATTTGTTTTATACACAGTCTAGAGTCTAGTCACAGAC GTGACGTTTACTTTCGCATTCGCCTCGGAAAAAGTTGCTGTCAAGTGGATTTATTTTCAAGCAGCAAATA CGAACACGTTCCTCTTTTGGATCAATGGATATTCACTTAGGATTCTCTCGTTGAAGTTTCAATTAATTGA ATTATCATGTGGCAATTAATAGAACATTACTATTCGCAAAACTACACTGTTTTTTGGCTGGCAGAGTTCT TCCACAGCTGGCCACACATCTCGTACAACGGGCTGAAGAAACAAGACTCGACATTCGATCCCACAAATCA AAAATATATCGAGTCTCTGATCTTCTGGGCCGCTGTACCAATCTTATGGCTTCTCCTGACTCTGGTTCTC TCACTCTTCTTCAGCTGCTGTTTGTGCTGTAAGAGACGACGGTCATTGGATCCTAGTCGGGCTAGACTAT CGGTCAATTGTCCACAGAGATTCCTCATCATAGCATCATTTGTTTGCCTAGGGCTTCTCGGAGTTGGTTA CTATGGCAATGAGACGACTGCTATTGGAATCCATCATTTCATCAACTCAGCCAATGGGATAAATGACACT GTTACCAATGTGGATTACAAGATCAATAAGATTGAAGATGATCTTGGGAGCATTATTCCATCTGAGGTGG CATCGCTGGAAAGTGAGTTACGGAAGAACGTGAGCAATACGACAGCTCTAGGTATAATGCTTGAGATGAC TGCCTCATTGACGCAAGCATCTGAGATGGCAGCAGCTAACCTGACGGAAATCAGTGAGAAGATCTCTCTG AGTGGATTGGATAGTAGTCAACTCATCAGTAATATCAAATATTATGACTACTTCAGGTGGATGGGAATGA CCCTGATTCTGACCTTCCAGGTCGTGACCTGTCTCTTCATCCTACTGGCTGCATCAAAGGCATCAAGATA TCTCCTAGTCTTGTCCAGTATCTTATGTATCGTGTGTATCTTGATGATCTGGTGTTTAGTTGGAGCAGAA CTCTTCATTGAAGTGGGGCTTGGTGATCTGTGTGTCGATCCTAGTCAGTATATCATGACTGAAACCAGTA AGAAATCTGAAATATCTCAAGATGTTCTTGAATACTACATTCAGTGCACAGACAGCAGTCTAAATCCCTT TAGCTTGGCAATCACTGAAGCGAACAATTATCTGGCTTCAGCTCATAAATCTGTTTTATCTTTGGAGGGC ATGGTGAGAGAATACACCCCATCTTCACAGAGGTACGTTGATGCTGTTGGAGTTGCTTTGGCTGATGTGT CTGAGTATACACAACAAGTGACAGCGTTAGTAGACTGTACAGGCATTCACAAAGATTACATCACTGCTCT AAATGGCATATGTTATCATACAATAGCTGGTGTTGGTTTCCTGCTAGTAAGTGGCATAGTCCTGGGTCTC CTGATCACGTTGGTCTTGTGTATGTCATCCACACTGGCAGCCAGGATAGCAAGAAGGAAGATAAATTATG AGGTGGACCAGGAAGATCCTTTCCTGCCAACTCCAAACTCTACGGCGACCTTGGAGAGATTCAGAAGAAG AGGTCAAGAACCAACGGATTCAGCTCGGGTCACGCCCCCTCTTGCCCCCATCTCACCTACCAGACCCCAT TCACAGCATGGCTTTGGTCCGTTTGAAATGGTGAACCCTCGCCCCCCTGCCGGCCGTACATCATACGTAT CACACCAGCGAGATAGTTATATGGAAGATTCTGTAACAACAACAAGAGGAAACTATGACACTCCCCCTCC CACTTATACCATGGCCATGAGGCGGGATGGGAACAGACGAACACCTGACGGGAGATCAGCAAGAGAAGAA CAATCCAATCAGAATAGATTATCAGCAGGATCAGCTAGTCTCGTCTGACAATGGCTTCTATGGCAGACAT AATGGGTCTGCTCATTACTCAAAGACACTCAAAGACACTCAAAGACTGCTGATCTTATGGAGGGAGTGAG AGAGTGAGAGAGAGAGAGAATGAGAGAGTGAGGGAGTGAAACTTGAGGATCACAGCCAATCTTGATAATC TGATGCATGGATAGATAGGATTCATTATCCTCTTCTACTCATGCTGGTTGTTAAGAAATCAATGTTTTGT TAAGTATCTGAAAATATAAGATATATTGAATTTGTTTTTTTCTGTGTATGTCCTACAACAAAAGAGGCTA GTCTGGGTGAGGAAATGCTGATATCAAGTAAACAAGAGATTCATCTCAGTATGGAGAGATAGATGGAATG TAAATTAATCCATGTATAACTTAGTCTGCTATCAAGGAATACATGACAAAGGGGCTCTGAATGCCTCTTC CATAAACCTTTTAACATTTTTGCTTGTCAAGTATTTAAAAAAAAAAACAGTATTTAAAGAAAAATATGAT CATGACTTTCCATGCAGTTTTCCTAATCAATTAAATTTCCTTTGATTATATGGACTAAATTGCTATTAAG GAACTACTACCATTTATGCTTTTTAGATAGAGCTTTCTTGCCATTTCAGAAGATCCATAACTAAGTATGT GATATTAAACACAATCAACAACCCACGGAGGATCTTATTCTTATTGAATAGGGTTGAGATTTTACAAGCG TTTGTCAGAAACCTTATAATAAATGATTTTAAGTAAAATAAACATTATGTACTTGGGGCAGAGAGTAAAA TTCTCAGCTCCTAAAAAAAAGAAGAAGCTTATTGATAATCAACCAGCCAATGTGCCTGCACTCTTGAGTT TGTGCCAAATTTGAACTCCCTTTTAAAGAGAATGAGAGGGGGAATTGTGTGTGTGTGTGTGTGTGTGAGT GAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGGACGACCTTTCCTATGCCCACATGTCTATGTAAATAT TGAGCCATACAATGTTCCTTGATATTATGTAGCTATTGTTTGGATCTCACCTTTGTTATGATAATAGAGG GTAAGATAACATTCCATAGGAAACAATATGACCAGGATGACATTCTCTACATATATATTTACCAATCTAA TAGGCCTTACACTAGTGATGATACTCATGTATGTTATCAACGTCTCTTCTATTCTTATGTGTTCATGTGC AACAAAAGTAGACCTTTTTAATGTTGGCATACACATGCGGTAAGGATGCACACACATACGTATGAAAATG CTGAACATGCATCACATATACATGTACATGCATGCAATTAAAAAATCTCTAAATGATTCATGATTCCATC AATGTTTGCTTCAAATATGTGAAGGATTGATAGAAGCATTTAGAATCATTGAACAACATCCACTAATAAC CCTAAAGATATGGAAAATAAATGAGTTAATCCTCTCTAGGCAAACAATATAAAGATCTTTGAATATCATC ATAAACTTTGTATAATTATTTTTGATAGAATTGCTAGTCATAGTGGATCAGTAGAGAGTAATGCTCAATC ATGTGTGAGGCAAACTCTAAATATGTAGATTTAATTGTTCTTGTCTACTCTTTATTACATGTATGTATAT TTGTCAGATAATGAATTTGTTTGTTTGTATAAAGAAGTATATTAATGGACCAGTGTACGTGTATACATTT TATAGAACATGAAATGTACTGTATTTGCCATAGTTATGTGTATATTATGATGACTTGTATTGATACTGCT GTGGGTTCTTTTTAAAGGTCAGTCAGAGACTAAAGGTTTTTAGATGGTGGTTTTACTAAACATGAAAGAA AAAATAAAAATAAAATTTATGCTAGAAGTCAGGGAACATTTCCAAATGATTTCAAGGAACAATGTACTAA GCGATGAACAATTTTGATAACTGTTGCCACTTTTGGGGAAATTTTCAAGTCATTTGTAGTCAATACCCCC CCCCCCCCTCTTTTAAAAAAAAATGGATATTGCAAGTAAGCCTACATACATGTTAATACTATGTTAATTC ATTCATAGAAAGTTGACTCTAGCAAATGTAACATTTATCATGGCTAATGCTATTAATAATGGGCTTGAAA ATACAAGAAAAGTTGACGCCTTAGTAACAGTATATTTTTTCTACTAAATGATGATTTAAATGTTGCATCA TGACTATTGAAATTGTATTTTGAGAGAGAGAGAGAGAGACATATAATCTGTATATTTAATGAGATGATAT TTATGTATTTTTACAGATGCTTAAGATACTACATTCTACATTGTGTTGTACATATCTGTAAATTATATTG ATTTCTTATTTGGAGAAGACCACCCTGGTATTGATGCTTTTATCAACAGCAGAAAGAAAGTGAAAGAAGA CAGATTAATGTCTGTTTATAGAACATTTTGAGAAAAAAAGAAGTAAATGAAATTCATGATAGTTCAAAGA AAAAGTAGTAAATATGTGATCCCTTGCCTATATCTCTTTCAATTTTACTGAGAACGTTTTTCTCACACCC TTTTTTAAAGATTCATTATTTGGATATACTTTTACACAACTAAATAATGAGCTCATCACCACCAAGAAGG ATTTTAGCACCAATATTGAATGCAAGGATAATCAGAGATAAAATCAGACATGACAGTTTCTGTAAAATGT TGTCAACATTTTTACTTTTTTGGTCTGATTTTTCTGCTTTTAGTACTTTATATCAGGATGGAATTCACAT TATAAGATTTGGAATTAAGTTGTGTAGAAATACATGTAATATTATTCAGATTTGAAATACCTATGGTGCT TTTATCTAAGACAATCGGTAAGACAAGTAGTATGGACGAAACAATGGTAGCAAATGAGTATAGTCAGAAG AATTTGATGAAGATTTGATGTGGATTGGCACATTACCAGAGGAACAGACTTGTTTTCACCATCTTACATT CTAGTCAAAGGGATGTTTTATGTCAATATAATTGGATAGGTTTAGTTAAGTGAATGTGAATGAATGATTT AATGCACAAATTTCCATCAATCTCTGTCTCTATAATTCAACACATCTAAAATGAAGTTCTGTCAAAGAAA AAATGAACAAGTTAGTATAAAAATTGAAAACAAATATAATTAAATCCAAGCTTTAAGATGTTTTAACTGA TGAATATTACAATGTGTAAATGGATAACAAATTTATCATACAAAATATTTTTGTTTGATAACCCATATGT CATTTAACAATGTTTTAATTATATTTTGTTTTCCACCCTCCTCACAACAATCAAATACTTGCATTTTGTC CTGTGAAAAATGTTTATTTCAAATCTGCATCCTTTGTGACTGTGGTTTCCATAGGGTATATGGTACATGT ATATCTATATATTGAAACCCATTTACCAATGAAAGTTATGGATACCGCATCTCAAGTTGCTATTTGTGCA TACAGTATGATCGCTGTAAGACCTGGCAGAGTAACTATAGAAGGCTGTTTCAGGGTTGTCTTATCTTAAC CATTGATGTAATAGAAGAGATTTTGTACAGTACTGTTCCATTATGATCATTCAATATAAGTTTGTGTAGA CCGAAAACTCAATCCAGGAGATTGTACAGTATTAATCAGGATGTTTTTAATGACACTTGCTCTGATGACC ATCACTAAACCTAACTCCAATAATGACCATCACTACCTAACCCCCAAAACCAAATTGCATTCCAAGTCAT AATCCTATATCCCTTTATAAGGCCTACGAGGAGAAATGTTGCCGGGCAAATGCCTTCTCACTTTATATGT ATTATGATTTTGTGCAAGTTCTGCTAGGATACTATTTCTTGGCTTTAAATGCTATTTATTTTTTACTACA TAGTGCTGCAGTAGTGTACATTTTCTTATTCGTTTACTGCCTTTTTGATGTCTTAGTTTTTTTAATTTTT TTTATAGATGATGCAGAGTTTTATCTCAAGATTTAATGAACTTGTCTTGCAAGAAATAGTTCGAAATTGG TTTGATCTCCATACATTTGGTAGTTTGTCGCATTTTTTGATTTGCCAATTATCAATTAATTTCAAAGAAT GCTTCCAATTTAGACCTAGCTGTGTACCAACATCAATACCTGTAGATTCCCTCCTTCCTACGTTGGAAAT ATGCGTTGATTCCTCTAGAATACTTCCTTGCTGGCTCAAGTAAGAGGGGGAATCGGTAGAACAATGATCT TACTTAAATATCACAGCTATAAAAAAATGATTGTGTTTACACTCCTAGTAGAGATGAAGTTATCTTGACC AATCTTCTTCCAAGGGATGTTAAAACCCTATCAAACAGGCATACAATAAAAACAAACATAAAACTATGAA ATTAAGATGTTCACTTCTAAGTTCAGATGTAAGCCATACATGAATCTTAGCTTTCTCTGTTAACATGGCA TGAATGGTAGCAGTTGATAGGCCTATTGGCTGTTGTGTGTTACCCTCCTTTTCAGTTGGAAGTTGGATTT GTTAATAGCTCCCACACACTTCCCTTTTCAAGGTATTAGTAACAGGTTGTTTAATTATAAGTGCCTGTTC ATCTGGCCTAATCACACTTGTATTAGCACTTCTACACATGGTCAGGCATACTCAGTAGTCTCGGAAACTT TGTCTGGTTTGAGGAAAGTCTTCTCTAGAAACAATGTAGTCTTCCTACAGACATGCACAATCAAGAGTCT AAAATTTATAATTATTTGTTTTCTTTGATGACAATAATGTATTTTCTAGTTCACTAAACCAATAATGATT TAAGGTAATTTGGGTGAGTAATTTCTTACCAAAGAACTTCACTAAATTAGCGACTACATTCATGAAGATT TACACATTTTGAAGGCTTTTTTGTAATTATTTTAGAATGAGTTGATTTATTGATAAATACTCTTGTAAAT AGCTGGGTATATATTAATTTGTTATTTTGCACAGAATATTATATTGTATAGATATATAATTTGTGTATAT CTACATGTATTTGCATATCCGGAAATTAGATATACAATGCAATTGAAGCACTTTTTATGCATATGAGAAT AAAATTGTACAGACAAACCATGTATTAGTTGTGCGTTTCTTTGTATCTGTATTCCATACATGGGAGGGGG AGTAGGTTTAAGGTCACAGGTGGATTAACATGACCGGACAAAAGAGATTTTTTCGCTAGCATCACTATTA CCATCGATGTCTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds