Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041601849.1 PREDICTED: Lytechinus variegatus Fanconi anemia group D2 protein-like (LOC121410029), transcript variant X1, mRNA CGCGGTTCCTTTAAACCCGGAACTTGGAACTGCTGTCAATGTCGTCATGATCATAACGTTAAAAACTCTT CAGTCTAGTAGCTGTTTCCTTGTTTTGAACCATTTCATCAACTGATTTGCAGACATGGCTAAGTCCAAAG GAAAACCAAAGAGACAGAGGGAATCACTTCCAGAAGAAAACCCTACATCAACTGAGGGTGCAGTGAAAGC TAAAAGAGCAAGAACAAGTGCTGACAAGGGCAGGTCAAGTAATGTGGCTCCTATTGTTGACAAATCAACA TTTGGAAAGATGGTAATGGATGCTGGATTCTGTCTTATTGCTGGAGATCATCCTAATCAACTCAATGTAG ACCAGGTGATGTTTCAGAAAAAGCTGAGGAAATCAGTCAAGTCTAGGATGAATGTAGGAGAGACAGTTGA AGATTTTATATCAGGTCTCCAAAATCATATTGAGGATCCAGTCAGGTTCAAATACAGTCTTCTCCCAACT TGCTCCTCTGCTGAATGTGAGAGCGCCAGGGGAGGGAATCAGGATAGTCTCATCAGATTGATTCTTGCCA TTGATGAACTACAGCCTGCTCTGGTCAATATGTTGCTTGAAAAGCTGCCTGAATTTATGGGAGAAGAAGA TAGCATGTTTGACTACAGTGAGGCCGTTGACTTACCTAAACTTATTCTCAACCAGTTTCATTGGATGGAC AATGTTATCAACAGCAAGGAGATGACAGATAAGATGCTTGAGATGGTAGAGATATCGTCACCATCGGTCC AGAGAGAGATCATTGCTTGTGTTCCAGAAGTAGTTAGTGATCAAGAACATAATGAGCTAGCTAACAGATT GAAAAATATGTTAGAATGTAATTCTCAGCTGACTGTACCAATCATTGATGCCTTGGATAACCTCAACTTA ACTCCAGAACTTCTTAGAGAGGTTCGGGGTTCAGCTCTACAGAGTCTTGTATCTGCTGATCTAGATGACT TACCTGTTGTTATCAAGTTTATTCTCCAGTCTGTGTCTTCTACTGACTCTTTGGAGGTTATCAGTGAACT AAGAAGGAACTTGGATTTCCACACATCTCTTCCACCATCTTCCGCATCTACACCCTTTGCGAGATCATCT ACCTCAGGGAATGCATCAAGTCATAAGAAGACTGTTGATAGCGAGATGCTGATCCTAGAAACCATTAAAT CAACCATGAGATTCAACAAAGTATTAGCAGATGGATGGCAGAAGGCTATTGAGAATGTATCAGATGCAGT CGGTCACAAGGTTCTTGATATATTTGTACTTCTCATATCTCATGCTGTGGCCAATAGAAAGAAATCTGTT GAAGCAGTCTTCAGACATAAAGTACGCAAAGGACACTTCACAGAAGAATTGCTTCAAGCAACATTCACAT CACATGCCCAGGTGATAAGAGATTATTTAGGATCATTGCTGTGTATTGCAGAGAAACTATTGAGATCGCC TGAGCCTCAAGTCAGTCAGTTTGGATCGAAGGTCTATCAAACAGCATTCAATGCATTTGATGTATATAGT AAACAGGAGGTTGTAGGAGCATTGGTAACACACATTGGCAGTGGTTTATCAGATGAGATGGATTCAGCGC TTGACATTCTCTCTTATCTTGCAGCATCCCATACCAAGGATCTTGCACCTTTTGCTGTTTTCATCAAAGG TGTTCTTGACTACCTAGATAACTTATCAATGACCCAGGTCAAGAAACTCTTCTCAGTTCTAGCTATCTTA GCATACAGAGGAGGTAGCTCTGGATCTACACTCCAAGATGAGTTGCAGATTGTTGTCCGTAAGAATCTAA CAAGCAATAGTCCCAAGTACAAGCGCATGGGAGTGGTAGCTGCCCTAATGGTTATACAGAACATGGCTAG GAAAGGGATTGATTCTGGGAGTGGTAAGCAAGCTCTAGCATCATTACCTCAGGATATCTTCAAGCAAGTG ATAGGTCTTCTTGATCTGGTCAAATCAAGCTGTGGTCAAGCACCCGAGGCTGCAGCTCTATTCTTTGATG AATTGGCAAACATTGTTCAGAAGGGTGACTTACATCCTAAGATACTGGAAACTGTTGGTGAGAACATCCT TGATGATTTTCAAACAGACTTTGTGGTTGATATTGAAGCTGAAGCCACCACTGTGAATTATGGCTTACCA ATGGGTGAGATGTACAGTATGGAGGGGGAGGAGTCACAAGGAGGTGTGGCCATCAATCTCCTCCCACTTA TTTACAAGGCAGAGAAAGACAAACAGAAGACTGTTGCTCAAAATAAGAAGGCACAAAGATGCGTCTCCCC AGCCTGTCTGGCCCCGCATTTCCGTTTACTTCGTTTCTGTGAGCAAGCTCAACATGATGGTAGCTTAGAA GGGATTGATGCTCTCCTTGGTTGTCCTCTATACTCATCTAAAGATGACCTGGTTGCTAAGATACACTCAC TATCCAAACAAGAGAAAGAACTCATGTCTACCAATCTATTCCTCTGCATCAACTGGTTCCGTGAGGCAAT CAATGGTTTTGCAACCCTTCAAGACCCAGAGATGAGAGGCAAGGTGTTAGGAAGACTACAGAACATCACC AGACTACAAGAACTCTTAGAAACATGTCTTGAAGCTACTCCAGGTTTCATTCCTCCTGTTGCTCATTTTG ATTGTGAGCAGCCTCAGACGAGTCCATTAATGACAGCACAGAATTCATCATCATCAAGTAAAGGTGGCAA GAAAGGAAGGAAACCTAAAGATGATAAAAAGAAAGGAGATGAAGATACAAGTGAAAGCACAGTCCTGACA GAATATGACTACGTCTCACAGGAGAATAACAAACCAAATGATACCACAATGGCTGATCCTATGAAGGAAG GATCTAAGAAGAGTAACAAGGATACACCTATCATTGACTGGTCTAGGTCTAGAGCATTCTTTCGAGAGCT GGATTTAGATGTTTTCTCTGTTCTTGGTTGTGGGCTCGTATCAAGGACTATACTAGACACAGAGATGAAT ACAAAGGAGGTACATGTCTTGCAGCTTCAACCTCGTGAGTTAGAGTTTCTCCTTCAAGATCTCAATAGCA AACTAGACCACGCCCTTCCTGCCTCACTTGGAAGGAGGACATTTCTAAAGTCTAAATGGGACAAGACGAT TGGGTTCTCACACTTGGACCAGCTCAGCCCAAAACAAGTGGCCAAGAAAGCTGTCAAAATGTTGCCCTTG CTCTGCCAGCATCTAGAGGCAACCAGTGGATTCTTTCAGACATTGATGGCTCAGAATGATGGTATGATAG ATGGTCCAGGATGGAATACAGAAGAAGCTCATCAGATGGGACGATGTCTTCATCTCTTACTCCAAGCCCT TCTTGCTCTCTTCTCATGGAGTGGCTTTGTGTCATCAGTAAATCAATCTATCTTTGAGGAAGCAATGGCT ACTCTCAGCTCTCGTATTGCTGATGCTGGCAAGACTTCCTTTACCTTCACTCAATCTCTTAAACATGCTG CTCATTACATAGAGAATTTCTCTGGTACTGTACCCAATCTTGCCATCGGTGTAACTATCCTTAAAGTCAT GGTTAGCATCAACAACAAAGGATCTACACCTGCTGCTAACAAGAAAATAGCAACCCTAGCTGAATCTTTG TTGAAGAGAGATTGGTTAGATGAAGACGGTGTTCGAGAGAAAGGAGCCAAATACAATGAGCTTCTTCAGA CAGTTATTGAGATCTACTTGCATCATAGTGAAGATTCTTTATCATCTGTTGAGATGCTATGTACAGAAGC ATTACCTGAACTTGATCCATCAGATAAGAACGTAGCATCAGCTCTCTTCCCAACCCTCAATAGGAACACC CTAAGCTGTTACTACCATGTTATGTTGAAGGAGTTAGTTTCCTGCGTCCAGCGATTACAGCCTTCTATGA GGAAATCACCTGATGTCCAGGGTGAGACCTTTGACCGTTGGAGATCATCGGTCAAAGTCTTCTCTGCTCT GGTCAATGTCATCAAAGTGTTTGATCTTAGGAACAATATCAAGACACTACTTAAGTATGGTAGAATGTTC CTTGATATCTTCCTACGTCATGCAATGCCTCTCCTTGATAAGTTGTTCAGAATTGAGAAAGATGATGTAC AAGCTCTTCTAAAGATGCTGCAACAATGCACTAGATATCTACAACACATCTGTAGCCATTCAAAGGTTGC CAAGGATATTGCCCTGACTAGTCATGTACCTCAGATGAAACGTCTCCTTGAGCAATTTGTCTACAGAGTC AAGGTTATGTTGACCTTACACAACTGTCATGAAGCATTCTGGGTAGGAAACCTCAAGAATAGAGATCTCA AGGGAGAAGAGATTCCATCTCAGATAACAAGAGAAGATGATAGTGAGGAGGAAGAAGAAGAAGCAGCAAG TAGATTAGAATCATCTGATGATAGTGATGGAGAGAAGGAGGAGAGTGGTGGAGCTAAAGGTAATGAATCA GACAGTGATGGCTCCTGCAGTGACAGCTTCTGAGCTGATCCATCAACTCCTTCAACAATCTCATGAAGCT TGTCAAGTTATCATTCTCTAACAGTTACCATAGCAACATTCAGAGACCAGTGCATCTCAGCCAATCAAAA GCTGACAATTTATTGAGTTCATTCATGAAACTCCCACAGGTTAAACTAATTTCTGAAAAATCAGAGATTA CATATCCCATGAAGCTTGCTACACATAACAAGAAGATACATAAAGTTTGTCTGTAGTGACAAGATAAAAA CAAAGTGTGGCCTTTATAGGTAGGATAGACAGGTTCCTGCTATAAAAACAAAGTGTGGCCTTTATAGATA GGATAGACAGGTTCCTGCTATAAAAACAATGTGTGGCCTTTATAGATAGGATAGACAGGTTCCTGCTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds