Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XR_004061759.1 PREDICTED: Strongylocentrotus purpuratus ATP-binding cassette sub-family C member 9 (LOC588997), transcript variant X3, misc_RNA GTGTTTGTTAAAAGCTTCAAGAATTCTCTCCAATTAAAAGAAACCCATCGGACGGGCGGACGATGTACTT ACTTGGATTTTACTTGGATTTACTTGAATGTAGAGACGTAAAGATTATAGCTTATTTGCCCCTCGTCACG TTGGGTAGTCTCTATTGGAAAATTAAGAAGATGGGGTTTTCCAGTGCCTCTCAACAACAGATATAAACAT GTTAACACTAGTGGTAGAAACTGCGTCCTCTGATGAAGCATTCCAATTATTTATGCTTCTAATTTAAAGG AGTTCTGGCTTGACTGTAATCTGCACCTAGGCTTCTTTAGTTTCATGCTATAACCCCTGGTTCTGCCACT TTCGTCAATCAGAAATAAGTTGTGTAGTTCAATACGACCAAGTCCTCTTGAAATCGTGTATGAAACTCTC ACCCGACAGTGAATTCCAACGGCTTCTGAAGCTGTATAATATTTAATTTTATTTTCGGATCTCTTTTGGT TATTGCATTTGGATATACCTGGCGCTGGAAAAGAGGACACATACGGACAGAACAGAAAACCATGGCAGAG GTAACAGACGCAGTTATTTCTTGGTTTTGTGGAGGAGAAAACTCGTCTACCGTAGACGATGTTTCAATCA TTCTACATCATCCTGGTAACTGGGCCTCCAACACCTGTACAATTGACCTCGTATTCCTTATCTTGCACTT GGTATTTTGTATGATGGCTTCACTGGTTTTAATCTTCATACCTGTATGTAGCATCTCTCGTACAACTGAT CATGCCTACATCATCCGCTATCCAGGTCACGTGGTCCGTTGGTTGACGTATATCCTGTACACTCTTCTAT GTATCGGTATGATTGTCGAAAGTATCTTAACCTCAAATGACCATTACTTTGATGGTCCACCGAGACTGTA CATCGTACCACTAGCTGGATTCCTGGCCGCCATCTTTGTAATGGTATATTATCATTACATGGAATACTGG GAGCTACCGGGAATGTGGCCTGTACAGTTCTTATACTGGGTTTGCCTCCTCGTCGCAGAGTGTTTCAGGG CCCCTGCGTTTCATCACGATAATATTACGTCACGTCACATGATCTGGATCTTCAATAAGTCAATGGTAGC TGTGGATGGAGCGATGTGTTTGGTGGAAATATATTTTCTGATGAAAAAGGGATTCAGCCTCGGATCATCA CCTAAAGAACATCCTCCAGAATTGAGGAATCTGAAGTATCTTCACGATGATTGTAGTTTGCCATCATCTC TCCTCTATGCATGGATGAACGACCTGTTTATGAAAGGCATGACGCAGGCAATAGATGATGAAGATATGGG GAGTCTACCCGATGAGCATTCTACAAAGAACTCCAGCGAACGATTCGCCAAAATTCTCATCCAAGAACAG GAGAGGGCCAGAACTAAAGGCCGTGAGATCAGTTTCAATGGAGCTCTCTACAGATTCCTTAAGAAAGGAA TATACATTTCTGGAATTCTTAAATTTGTTGGAGATACGTCAGGGTTTGCCGCGCCATATGTCATCGCTGG AGTTATCAGATGGGCAACTTTGCAGAGCAAAGACATCGAGGAGACAGGGCCAACAAATCATATGCTGGAG TCATATATCACGGTGGGAGATTTCTTTTCCAATGGATATGTTCTGGTGACGGTCCTCTTCTTCCAATTAG TCTTCCAAAGTATCTGTACTCAATTAAGTTATCACTATATCAACTTAGAGGCAGCCAAAGTCAGGGCTGC CATACAGTCAGCAGTGTATGCCAAAGCCTTACGCCTGTCGAGTTCGGGGATTGGTAGTGGGTCCCTCACC ATCGGTCAAATTACCAACCACATGTCAGTCGATCCTGCGACTATAAGCTTAGCTTTGAGTTGGTTCCATT CCTGCTGGTCTATACCATATCAGGTTGTTATATACATGATCATTCTCTACTGTGAACTTGGAGTGTCAGC TCTGGTTAGCTGCGTCATACTTCCACTGTCTATACCTGTTCAGATCTACATTGCTAATAGACAATTATTG TACCAAAAGGAGGCTATGAAACTGTCAGATGAACGGTTAAAGCAGACTAACGAGGTACTGCAAGAAATGA AAGTCGTCAAATTAAACGCTTGGGAGAGAATATTTCAACAGGCTATCGAGGTCACAAGAAACAAAGAAGT CGGTAAACAAAAGGTTCAAATGTTCTGGCGTGTCCAGCTAAATTCCCTGGCCAATGCAGTCCCACTTCTT GTTATGCTTGTAGCTCTAAGCCTGTACAGTGTATTCTCCGGCAAGAGCCTGACTCCTGACTTAGCCTTCA CATCATTAGCAGTCGTCAACCAGTTTCAGCTTCATCTACAGTTACTACCAAGAGTGTCGTCATTCTTTAT CATGGCTTTCGTCAGTAAACGTCGACTAGAAAAGTTCTTCAAAGCTCCCGAGATCGAATGCAATTCATTG AAGGGCGGTGAAACGAATGAGGACAACGATGATAAAGAAAAGAAGAAAAAACTCACCAATGCCAGTGCTT TGATCCAAAAACTGAAGAGAGGGTATGATAAGAAATATGGATCAATTCCATACTCAACGTTGTCAAACGA TCATATTGAATCTCAAACGCAATCTATTCCTATGGCGAACATGAATGCTGAAACAGTTCCATCGGGCATT GCATTGAAGATCAAAAACGGTTCATTTTCATGGAACCGTGAGCCCAGAACACCCATAATATCCGATGTGA ATATTGACATACCGGCAGGTCGACTTACAATGATTGTTGGTAAGATTGGAGCAGGTAAATCTTCTCTCTT GTCGGCCATGTTGGATGAGATGATCACGTTGGATGGTGTAGTCAAACATCACAGCAAAATGATCGGAGTT GCATATGCAGCACAGACAGCGTGGCTGATCAACGCTAGCCTGAAGGATAATATCGTATTCGGAAACACCT TTAGCCAGAAAAGATATAAAACAATATTGGAAGCATGTTGTTTACAACCTGATATTGATATCCTCCCTAT GGGAGACCAAACGGAGATTGGTGAGAAGGGTATCAACCTTAGCGGAGGTCAGAAGCAACGCATCAGTGTA GCCAGGGCCATGTATAGCTCAAATGATGTCGTCCTTTTGGATGATCCACTATCAGCCCTTGATGTGCACG TTGGTAGTCACATATTCTTCAAGGGTATTCTTGATTTCTTGATCGAGGAAAGAAGAACTGTCGTGCTTGT CACACATCAGATCCAATACTTGGAACATGCTGATCAGGTGGTCTTTCTCAAAAACGGACGTATAGCTAGG AAAGGAACATTGCGAGAGATTGCTAAATTGGATCCTTCCCTCGTAGAGTCTTGGAATCTATCTCTCAAAG CGGCCGATGAAGCAGAATTAGAAGTCGGATACTGCAGTTCAACAGATGAAGAACGAAAATTACTCAAGAA AAAAATATCGAAGATTAAGAAAGGTCAACGTCCACAAAATGACGACTCTTCAAGCAAATTGATCGAATCG GAGGAGAGGAATAGCGGTTCGATATCCTATCGATACTACTGGTATTATTTATGTCAGTTTGGATTATGTC CAAGCTTCTTCGTATGCATCTTTGCTATACTTCAGAACGTGGCTAAAGCTGGAACACAATTCTGGCTTTC TGCCTGGTCATCGGCTGGTGCCAAGTTACCCAGCAATGCAACAGCTGAAGATTGCAATGCTTTGCTGATG GAATATGTCGGTGTATACTGTGCTCTAAATGCTGCTGATATGGTCCTGTGTGTGGTATGGACAATGATTC TACTTTTTCAGAGTGTCCAAGCCTCAACGAATCTACATAATTTAATGCTAAATCGAATACTGAGAGCACC AATGAGATTTTTTGACACGACCCCGATTGGACGAATCATGAACCGCTTTGCTTCTGACATGCAGAGACTT GATCAGACCCAAGGTCTATTCATCTTGGCTGTATTAAAGTTCTTCTTAGCGACCATGACTGGAGTGATAA TTAATGCAATCATCTCCTGGTATTTCATTGTGGCTATGATCCCCATCAGCCTGGCTTACATGTTCATTAT GAAAATCTTTATTGATAGCTCAAGGGAAATGCAACGGTTGGTGAGTATTTCCTCCTCACCCGTCTTCTCC CAGTTTACTGAGTCGCTTGGAGGATTGACTACCATACGGGCCTACAGACTTCAGAAAAGATTCAGGCAGA ATATCGTTGGTAAAATCGAGAGAAACCACGTGGCTTACTGCTTTCTTCAAGTTAGTACGCGATGGCTGGG GATCCGATTGGATGTGATAGGAGCCCTGATTGTTCTAGCAGCTGGACTGACTAGTCTTGCTGCCTCGGCT CTTCATCCAGCTACTTTTGGCGCTAGTCTTGTTGGTTTGGCAATAACATATGCAGTCAAGGGTCTGTTAC TCCAAGCCGTAATTGGCCAGAGATGGGCCATGTAATATACAATCGAGTACATGCTAGGTATGCGGCTACC CTACCTGCTATCCTTCATGGTGTTAGCATTGATTTCAAACCAGGCATGAAGGTTGGTATTTGTGGCCGAA CAGGGAGTGGGAAGTCTTCGCTGACACTGACACTTTTCCGCATCATCGATACATTTAAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds