Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT111088.1 TSA: Strongylocentrotus purpuratus WHL22.387771.1 mRNA sequence CCTCCTCGTGCCTGCCTGCCATATGCCCGGTTGTTGATGGAGGTTTTCGTGTCGATTGTTTGGCTCTAAC GACGTCGTCTGGGCTCGTTTGTTGGCGGTCCTCCACCTAGGATATCTTAAATCATCACAGACCTGAGAAG GGGTGAGCTCCTGCTCTAATGGAGATGCTATAGTCGTGATTGGACTCCTATTCTTTTGATAGTGGACATT GCTAGTATATCTTTGATACGTCGTCGTTACCGTGTTGGATTTGCTCATTAGTGTGATGTTTGGTTGCATG GATTCCGCACTGTGATTGAGTAGTAGCACTGTGCTCCAAATGAAATGCCATTGATCTGATGTAGGAGGGA GAGGCGAGAAGTGATCACCATGCTGATCAAGGAGTATCGAATCCCTCTACCACTGAGTGTGGAGGAGTAT AAGATTGCTCAGCTCTATATGATACAGAAAAAGTCTCGTCAGGAAAGCAAAGGGGGCTGGGAGCGGAGTG GAGATACTCATTAACCAGCCCTATGAAGATGGCCCGGGAGGCACTGGGCAGTATACCCACAAAATTTTCC ACATAGGTAGTCATTTACCAGGTTGGTTTCGTGCAATATTACCGAAAACAGCATTACGGGTTGAAGAAGA GTCATGGAATGCGTACCCTTATACGAAGACGCGCTACACGTGTCCATTCATCGAGAAATTTTCCTTAGAA GTAGAAACGAAGTACTTACCGGATGCGGGTCATCAGGATAACGTTTTTAATTTGTCCAGTGCAGAGGCTA AGAGTAGATATATAGATTTAATTGACTTTGTAAATGACCCCATCAGCATCGACTACGTCAAAGAGGACGA TCCTCGGACCTTCCAGTCCAACAAAACCGGGAGGGGCCCCCTCAACGATGACTGGAGGGAGGTGAACGAA GATGGCGAGTTCTTGCCCAAGTACGGCTGTACGGACGTCATGTGCGCTTACAAGCTGTGCAGGGTAGAGT TCAGGTACTGGGGCATGCAGAACCGGATCGAGAAGTTCATCCATGATGTCGCTCTGAAGAAGACCATGTT CCTAGCCCACCGGCAGGCGTGGTGTTGGCAGGATGAGTGGTACGGCCTGTGCATAGATGATATCAGGGAG CTTGAGAGAGAAGCTGCTGAAGAGCTTCAGGAGATGATGGCTGAAGCTCACATGGACGAAGAGATACCGG TACAGAATGTCCTCAACAGAATTGACAGTATGGCATCGAGAAAGCGCTTTGAGCACAGTAACGGTTCCGC GACCACCACATCGGAGTCGGAATCGGAGAGCAGGCTAGACCACGGGAGATTAGACTCCGTCGGTAGCGAT TTTGGATTAGATGAGACAGTATTTTCGAAACACGGGGAGAGCTCAGCAAAGTGTGCCGCTGCCAAGGCCA AGAGGAGGTTATCAAGTAGATTATCATCAGAAAGTAGGGGTTCCAGAGAGTCCAATAGTCACATGCTAGC TCACTGGCATATGGATAGCATACAGCAGGACTCAGATAGCTCAGATGAAGAATTCTTTGATGCAAAAGAT TGGCAGGAAGATCAAGAGGATGATGGACCTTTGTTATCCCATTGGAGCTCTGAAGATGTGCTCAGTCCAG CATCATTAGAAGATGAAGCCAGAGACTCCCAATTTGCAGGCAACATGCAGTCAGACATCACTGTCCTCTT CCTGGTGCTTCACGGTGGCAATGTCCTGGACGGCATGCAGGAGACAGGGGCCAAGAGCAGCGATATCAAC ACCTTCAAGACTGCCTTCGACGCAGTGGTGAGGGCGCACTTTCCAGTGGCGCAGGGTCACATAGCAGTCA AGCTGGTGTCGTGTCCGCCGACATGCCATGAAGCATTCAGCTTGATCACAAGCCTTGGACCTTGCGGGGT AGATGCCTCATCATCAGCCTTTGACAACAAGCTCCAGACGAACACAGGAGACTTTGTCCCCATCGGAGCT CTGTCCATCATGGCCACATCCAACCCTGACTACCTGGAGTCGGTGACCGCCACCGTCACCAGGATGAACC ACACCTACAATGAGTTTGTCAAGTCGCAGGAGGGCCACGGATTTCAAGGACAGGTGTGTGTAGTTGGAGA CTGCATGGGTGCCATCTTGGGTTACGATGCCTTAGCCAGGGGGACGTTGATCACCCCTCAGCAGTATCTT TCCCCTTCCATCAGCACCATGAGCAATTGCACCTTCTACGATGCGCCCATCTCCCCTTCGGGCACGTCCA CGCCCCCTTCCGGCTCCCCAACCCCAAACAGCACCTCGACCCTCACCACGCCTCCTCCTGGGAACACCAA CCAGCTGACCACCGCCCAATCACAGCCCTCGTTCCTCACCCACAAGTGTCCCAGCAACAGCACCATCGAC ATGTTGAGGACGACGGATGCGTTTGACGCGCCACGGAAGGTCACTGCCGCCAGTTCAAACAACCTGCAAG GAATGCATGATCCTGGTGCCAGATACACTAGTGCACCTCATGACCGGGTCAAGCGCTTCTCCAACCCCAC CTTCTCCAACCGGGAATCGATGCAGAGCTACAGCTCCGAGCTCGACGGCAGACGGATCAGTCTCTGCTCC CAGGTCAGCATGACCTCTGACATGATGCTGCCAAAGGTCGACTTTGAGGTCACGCATTTCTTCATGTTCG GCTCCCCGTTGGGCATGGTGCTGGCGTACAGGAGATCACTGCAGGATTTTAAACCAACCCTGCCTTTAAG ACCAACGTGTTGTCAGCTCTACAACCTGTTCCATCGGACGGACCCCTCAGCGGCCCGTCTAGAACCCCTC CTACACAGCAAGTTCTCCGTGGTGACGCCCTTCTCGGTAGAGAGGTATCAGAAGTACCCCCGCGGAGACG GCAGGTCTAATGGGCTCATTGATGCTATCACTGCCAACATGCTGCTGTTCTCTGAGGGGAGAGCAGAGGG CTATGGAAGAAGGCACACCAGCGTAGCTAGCTCAGCCGGTGAGGCGGGGGAGAACGAAGGGGTCTTATCA GGACCTGCTCTACACACTGTTAATGCTATTACATCAAAATGGTGGGGCAGCAAGAGGCTAGACTTCGCCC TCTATTGTCCCGAGGCACTGCAGGCATTCCCGACTGGCGCCCTCCCTCATCTATTCCATGCCAGTTACTG GGAGTCAACAGATACCATAGCTTTCATTCTCAGACAGGTATTTCACAACGACAGTGTGAGTGTGCATGCC GGTGACGGGACAGCCGTTGCAAACTTCATTCCTGCGCAGCCCAGGGAAAAATGGCAGCGGAAAAGAACGT CGGTAAAAATGAAGCAAAGTGTAAATCCAAACCACCGAGCTAAGGACGTTGTCGTGATGGAAGACGCTCC TCAGACCTTGGTTGGGAGATTCATGTACAGTACACTAGACATGGTCACTCTTACTGGGGAAAAGGTGGAC ATTCACATCATGACGCAACCTCCCTCTGGGGAATGGGTCCACTTTGCGACGGAGGTAACCAGCAGCACCG GCAGGGTCTCTTACACCATTCCAGAAGCCAGACGACTGGGCCAGGGTATTTATCCAGTCAAGATGGTCGT CAGGGGTGACCACACATCAGCGGATTCCTACCTGACGGTCGTACCACCCAAGACTGAGTGTGTCGTATTC AGCATAGACGGGTCATTCACAGCAAGCGTCTCTATCATGGGTCGCGACCCCAAGGTCAGGGCAGGGGCAG TCGATGTTGTGAGACATTGGCAGGAGCTGAACTACCTGATCATCTATGTAACGGCTAGACCCAGTATGCA GAAACAGAAGGTTGTCTCCTGGCTAGCCCAGCACAACTTCCCCCACGGTGTGGTCTCGTTCTGTGACGGT ATCACCACAGATCCGCTCAGACAGAAAGCTAACTTTCTCAAGGGACTCGTAGACCAGAGCAAACTTGTGA TCCATGCGGCATATGGATCTAGTAAGGACATTCCTATCTACTCCAGCATCGGTCTCATACCCACTCAGAT CTACATCGTCGGCAAGGTCTCCAAGAAGTACCAGGCACAAGCTGTGGTCCTGAGTGATGGTTACGCAGCT CACCTTGACGGAGTCAGTCGATGTTCCCGCCCCGCCGTCGGCAACGCCCGGGTGGCCCTCAGGAAAGGCT GCTTCAGTCTCCCCGGCCAATCCAAGCCTGTCAGACCGGCTAAACAACCTGCTACTAGAACTGCATCCTA CCACGGCACGAGCCCGTCTGCCCCTCCAGCTTCTGGGTCCGGATCGGGAGGGGAGGGGAAGAGTAGCGGG ATGACACGCACACTGAGCCGAGCAACGCAGGGATCCGTCAAGTTTGAGGTGTGAAATCTTCGGAACTCTG ATGTGGGACGTAGGTTCAGATGCTTTTGACAAGACGCTCTTGATGAGAGGCTTTAATCTTGGATGTTATT CGTATGATGGCTCCAACTCGGAGACTGCGATGGAAAGGAAATCTTTGAGATGGGCGAAGGAAGCTTCGTG GTGATGGTTTTGATGGGTATCCAGCACACGGGTGGTTTGAAGACTGAAAAACTCACAAAAAGACGAAAGG TATGTGCAATGAAGTGCGTGCATGCTCAGCCGTTGCACAGTGTTTTGCCGCACGGAAGAAGACAAACTTG AAAGGCAGCGATTCTCACGCTTCTCTTGTTGATTGGCCCAGCCCGTATGACGCAACTTGGTGGACTACCT GGTGACATAACTTGAAAGCGCTTCACAGTTCATCACTGAAGAAGAAAAAAAAACTGCTGTGCTTCAAATT GTTCACTTGTTAACAATCTTCATCAGGGGCCATCGATTACTAGCGCTCGTTCACGAGTCGGAGAAGACAC ATTTGTGAGAAGAACAAACTATCAACTACGATGTTGCTCTATCGTATACATATATATATATATTAATATA TAACTTTAAAGAATAATTGTTTGATGAACCAAACTTTTGAAAGTTATCTTCAAAATCCTACTGAATCGAA TGCATTCCAGTGTATGTTATTGCAAGTCGGTGAACTAAAGAAAGCTTGTAATGATTGCAAGCAATGAGTA TGAATATATGTCTGCTGTGGAATTGAACAAAATATTCTTTTATTTTCCTTCCACTTTGTCAAAAACTGAT ATAATCTCTTAATTTTGTTTTACGTTTGCGCAAAATAATAACAAAAACATTTAAGCACATCTAGGTATTA AAGACCAAATGAATTGTAAAATAATACTTTATTATTGGAAAATTTCATAATCTTTAAAAAAAGATCTTGT GTTCCCTTATGTGAAAATTATGTTTTGATACTTAATCTAGTGCTTTTTTGTTTATTTCATTTTAAAGATT TGGAAAAAGTGTATTTATGATGTAATACTTATCATTTGATTTATTAAAACAATTTACACAAGCAAACAAA TTTCATCCTGAAAGTCTAGTTCACTACCAGCCATATGAGTTTTATCATTTCTAGAGAAGTGAAATATATA TAACCCTGTGTCATATTCACTTATTCACACATTTTATCTAGAAAAAGAAATTGCTTTCCCGTGAATGAAT TTTTGTACCTTTTCTTTCCTCAGTTTTCTATTTAAGCCACAAGTTGCCGGTTTCTGACTTTATACAAAAT TCTTCACGAGACTGATAGATATTACCTATGCCCTTTTTTTATTTTTGTTATGTTGAACCTTTGCATGATT TTTATGAGGAGGATTTTTCCCCTTCAATTTCTTAGGTGATATTTGGGAATTTCTTTCATTCATAGAAATC CTGCTAATTAATCATGCATATTTTCTCTGTCTATCTCGCATATTCTCAAACAAAACTAGTTTGTGTTGTG TGCCATAGTCTCCCAAGATAACAATATTGCAATGTCAGTCAAGACTAATTTTCAGGTTTGCCAATTTTAA AGACATTTGCAAATATTTCTAAAGGCCATGAAACTATAATCAATACCACCCTTTTTTCTTTCATTTGCTT TAACCTTTTGATATCCTACTTCTAGACTATATTCAATTTTATTCCAAACTGCTTTTAATTGTAGACTAGG GACCAAATTACAATTTGGACCCAATGACAAGCCTGTGCAGGCTGTGGAATACTTGGAATATTTGATCATT TTAAATGCAAAATGTCATCGTGTGGAGAATTTGAAAGTGAATCATTGAAAATTGTACGAAATCGTGTAAT GTTGCCGTTGTCTACAGTATGTGGTTTTTACTTCTGTTTTGTCTAACTTTTCCTTTTTAATATAATTTTA ATTTTTAGATTCTGTATGAAAACCGTTGCAGCAAATTCTTATGCCTTGAAACTTGTTTCTCCATGCTGCA GCCTGTTGTCACATAGGTCCTCTGTTTTACCCTACCTGAAATAATTAAGATTTAGGAGAAAAATGCTGTT AAATCTTAAATTAGTTTGTTGTCAATTACAAGTGGCTATAACTTGATGCTTCTGAAATCCCTGCATTTGA TTTTCTGTGGGCAAATATATCATTCAATTTCTGTAACATGTAGCTTTGCAGGAGTTTTATATTAAGTTTA TTAAATAGGGCCCTGGTATTGGTTGCTTCCTGACCTGAGTATAAATAAAGTTGTTACTTTCTGCAGAGAG GCTCAATTTTCTCACTTGCCAGAATGAGAGAGTTAGTTATGATTTAGCTATGGCTATAATGAAACATAGT CTATCAAAGTTTAGCCAATCTTACTAAGGGATTTTAAAGGTCACTAAAATGTTAGTAACATTGGATTATT GAATTACCTCATGCCTGTAAGGTTAAATACAGTAGCGCATGGTTCCTGTAGGCTCACAAGCCCAACTCAT CGTGTAGGTAGTGGTGTAGTGGTCGAGTGGATACGTCCCTGGACTGTCAATCACAAGGTCCGCGGTTCGA GTCCCGCTGCGGCACTAATGTCCTTTGGCAAGACATTGATCTACATTTGCCACACTTAACCCAGGTGATA TTTCTCCATGCTTAAGAAAAGCCGTTTTGAATTCTTGTACCTATTTCTATGAGTGATGTAAATAACTGTA TGCAATATGGGCCTTTAAATAGGATAGAGAAATCGTCAGCAGTGAGCCAGAGGGGCGTTAAGTCTGAAAA TTATATGACTTAATTCCTTTCTGACCCTCAGGCTGATGAAAGATTGTCCAGCGTTGGAAATAACTGAATG TTTTATGATTACTGAAGCAGGGTTTCTATCTGTATCGAACGTCCAATACATGTGTCAGTGTATGTCTATC GTTCTAGAATAGCCGTGTGTACTATGCAGTGAGAGAAAGAGAGAGAGAGGGGTAAAATGAATCTTGGTAT TGGATAATTCATGAAGGCTTGTTCATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds