Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030998176.1 PREDICTED: Strongylocentrotus purpuratus ribonuclease 3 (LOC585199), mRNA TCGAGTTGTCTGCATACTGTTGCATGAATATTCATAAGCTCCTTTTCGAAGTCAGAGACAGAGCAGAGAC GGATAAGATAACATAATATCATGTTCATGGCCCATGATTTTGAAGACTTAACCTTTGCCTTGTTGATGAC ATCATAATGCACTCCCAGCATCCCCCACCAGATCAACGACCTGAGAGGCCCCCCTACAACCCTCAGCTCT CCTTAGGACCTTACTCAAGGCCTCCCCCTCCAGGAGGACCAGGTCCTGTGAGCTTTGGTCAGAATCAGGT CCAGAGACCCAGAGGACCACCTTTAGGACCACCCTTAGGACCTCATCCGGGATCCCAAGGACCTTTGTTT GGACATCAAGGACAGTATCCTCCTCCATCTGGAGTGCCTCCAAATTGGCATGGAGACCGACCTCCACCAG GCAGAGGAGACATAGCTTTCCCTCATAGGCCTCCACCTCAGTTACCACCCTTTACAGGGCCACCACCCCA TTTGCCCTTCCCGAATGGCCCACCTCCTGGGCCTAGGATGCAAATTCCACCCCCTGGAGGGGATTTTAGA ATGAGACCACCACCCCCATTTCACACCCAGAGACTCCCTAATGCACCCCACTTGCCACCACCTCCATTGG ACTTCTGCAATCGTCCAGGAAACCCAGGGATACCGCCAACAGGATTCGATCATCCAGGGGATCGACAGGC GGGCCAAGGTCTTCAAGGGCCAAGAGACCAGTGTGTTCCGGGTGCTTCTCATCAAGACCACCAATTTCTG CAACCGGATGCCGTTCCGTCATTCAGAGACAGAGTCTCAAGTCAGCAAGCCTCATCCTCCCTGGATTCTC CACATGAACATCACAGGGGATCACAAAGACCACAGGACTCCTCAAGGCATCAGGGGTATGGTGCAGATGA AAAAGGTCCAAGATTTAGAGATCTTGGGGAATACCAAAAGACATACACAGACTCTAGATCTTCAGACTGT GATAGAAAAAGGCCTGCAGATGATCATAATCGAAGAGACAGAGAAGGGTTTGGAAAGGACGCATCTAGAG ATCAGTTAGCTAGAGACAGCAGAGGTTCAGATTCCAGAGATCATTCTCGTCGGCAAAGAGACAGGTCCAG GGAAAGAACATCGAGGAGAGAGAGGTCACGATCTCCCAGACAAGGTCGTCGTGGAGACAGAGGCAGAACG AGGGAGAAAAGTCCGTCCAGAGAGAATAGCTCAAGGAGAGACCAATCAACAGGTGGTTCTAGCAGCAAAG AAAGATCCAGATCACCTAGAAGGCATGAGAGTTCCTCAAGGGAAAGAGGTTCACACAGGAGCAGCAGCCC TCAGAGGTCTAAATCAAGGAGGGCCGAAGGTCATGACCTGCAGGATAGCAAAAGATCTCGAAGCCCTTCT AGGGATCAAAGACCTCGAAGCCCTTCTAGGGATCAAAGACCCAGGGAGAGAGAGGGATCATTGCAAAGGC ATAGCAGTAGGAAACCTGAAGGGCAAATCACAGATCCCAGCAAAACCTGCCAGCGATGGAATGATCTGGA GAGAGAACTGCGAGAGGAAGAACTTGAGGAGAATGATGAGGATAAGGATCCCCTTGAAGATTCTGACCCT GAGGAGTGGGGTACAGATGACACCCCTTGGATCCAATGCTCCCCAAGAGAGAACTTCTACTCTATTAATC CCAGTGATCAAATTAGTGCTAGTTCTGTAGCTGGTACTGAGAAACTGAAGGAACTCTTGAAACGGTTTGA GGCAGAAATCATTGAGCGAGGACCTCGTGTCAGAGCCAAACAGCCACAGCCAGAGGAGAAGAAACCAGAA CTCCATTGGCACGTCCATTCTCATGGCCACCACTCAGCAAGCGAGAGTAGCGATAGTGAATCTGATTCGG ACACCTCGTCTGGCGAGGAGGACAAAGATTATGATTTCCGCATCTCATGTCTGGAGAACAGAGCTAATCA TCCATGGCGGCTGGCTGAGAATCTATGGTTCAATCAACCAGGAGAGATGAATGATGGTCCTCTGTGCAAA TGTAGCATCAAACAGAAAAAGTCAGGCATCAGGCATAACATCTTCCCAGGAGAGAAACCTGTTCCAATCT GTGAGCAACATACCAACAATGCATCCAAACTACATCACTACAGAGTCACCATCTCCCCTACTACAAACTT CCTTACCACGACTCAGACGGTCATTGTCTTTGACAAACGAGAATACATCTTTGAAGGATTCTCTCTCTTC TCGCATCACTCTTTGGATGAAGTACCCGAATGTAAGGTGGTCCGCTTTGGCCGGGAGTACACCCTTCACT TCTTCCCAGAGCCTCTGCCTGAGCACTTTACGGTGAAAGGCTTGGATTTATTTGCAAGGTTCTTGTTTGA GGAAATCCTGGAACTTTGGGATTTTGATTTTAAAGGAAAAGAGAATGGATGCCATCACTTCCATTTCATG CCTCGCTTTGCCCGCCTCCTTCCCAACAACGGCAAGGAGATCCTCTCCATGCACCACGTGATCCAGTACC TGATCCGCAGTAACAAGCCCATCATAGATCCGGCCAAGCTGGACGACTGGCTGGCGGTCAGCGAGACCGC TTGGCAGAGATATGTGGATAAGCTTCAGCATATGATTGCCACACGCCCAGGGAAGAAACCGTCATCGATA CGCATTGATCAGCTTGACCGAGATCAGATGAATCCAGATAAGAAGACCTTTCCTGTCGTCGTTCATTTTG GTGTCCGTCCTGCCCAACTCTCTTACATTGGAGACCCTAACTATCGTAAGCTGCTCAAGTCCTTCACCCG TTTGCGTCACCTCCTGCTGAACAAGCCCAGAGTGACTGAAGCTGATAAGGAGAAGCTGGCTGAGAAAGAG GCCAAACTGCAGAGAATCCGCGTCCAGGGAAGCAGGGTGCGGGAGGTCACCGCGGAGGTCAGCAGTGAAC ACATGCTAGCCACTGGTGTAGGAGTTGATATATGTCAGCATGCCCTGATGCTTCCAGTTCTTGTCAATCA TCTACGCTACTTTGCCTGTCTCAACAGCCTCTATCAGGTCCTGGGCTATAAGTTCCAGGATCCCATGTTG CTAAGGTTTGCAATGACACATCCGTCTTACAAGCTGTACTTTGGGACCACACCCGACCACGTGCGGAACT CTCTTTACAACTGTGGAATCCGCTGTAGACAGGATCATACAGAACACAAGAAGGTGCTTGCCAAGGAAAG AAAGAAAGGAATTAATCAGCTGTATCGCATTATGTCCCTGATGGCTTCCAATGATGAACTACCATCCCAC ATCAAGAATTACGAGCGTCTTGAGTTCCTAGGGGATGCTGTGATTGAGTTCATATCCAGCACCCACCTCT ATCACCTCTTCCCAGACCTTGAAGAAGGTGGTCTAGCCACCTACCGTATGGCTCTGGTCCAGAACCAACA TCTCTCAGTCCTAGCAAAGAAACTTGAGCTGGACAAGTACATGCTCTATGCACACGGGCCTGACCTCTGC CGACCTTACGACCTTCGACACGCCATGGCCAACTGCTTGGAGGCAGTCATGGGAGCAATATATCTGGAGG CGGGGCTGGATCTATGTCGGAAAATCTTTGGCAAACTGCTCTTTGAGGAAGAATATCTTCAAACTATCTG GCTTAATCATCCTAAGGACCCTCTGCAGGCTGATTTTCCTGAAACAGACAGGCACTTGATCAAGAATTCA GAAGTGCTGCAGAAACTGACAGTATTTGAAGGGGACACAGGGATGCGCTTCACGCACATTCGACTTCTCG CCAGAGCGTTCACCCAGAGGACTGTGGGATATACCAATTTGACCATGGGTTCCAACCAGAGACTTGAGTT CCTTGGAGATTCCGTGCTACAGCTTGTTGTCTCCTCATACCTCTACAAGCATTTCCCCAATCATCATGAA GGACACTTATCGCTCTTGAGGAGTTCTCTGGTCAACAACAAGACCCAGTCCATCATAGCCCAGGACCTGG GACTCGTTGAGTACATCATAGAGCCCAAGACCAGGTCCAGGAATGAGAACAACATTCCTATGAAGATCAT GGCTGATCTTGTAGAAGCCCTGATTGGTGCTATGTATGTGGACCATGGACTAGAAGTTGTTTCTACATTT TGCAGTGTTGTCTTCTATCCCAGACTGAAGGACTTCATCCAGACACAGCACTGGAACGATGCTAAGTCCC AGCTCCAGCAGTGCTGCCTGACTCTACGGGTGGAAGGTCAAGAACCGGACGTTCCAAACTATAAGGTCAT CGGCCAGAGCGGGCCAACAAATTCTCGCCAGTACTCTGTGGCTGTATACTTCAAATCCAAGCGAATGTCG ACAGGGACGGCCTCAAATATCCGGGATGCTGAGATGGAGGCAGCGAAGAACGCCTTGAGGAAGGGGAACT TCCCGCATCTCTGGTTCCAGCGGAAGTGTGTGATGTTGCGGAAGCAGAGGGAGGCCATGAGAGAGGAGGA GAAGATGAAGGAAGATGAGGAAAGAAGGGGCAAGGGAGAGGAGAAAGAAGGAGAGAATGGAGTGAAGAGA GGGGGTAGTGATTCGAGGGGCAGGAGGGACGATGGAAGGATGGATTCCTCAAGAGGTGAAGGAAGGAGAG ATGAAAGGAGGAGGGATGAAGGAAGAAGAGATGATGGAAGGAGAGATGATGGAAGAAGAGATGATGGAAG AAGAGATGACAGGAGAAGGGAAGATAGGAGAGATGAAAGAAGGAAAGAGGAGGGAAGGAGAGATGACAAA AGAAGAGAAGAAAGAAGTAGAGATGAAGGTAGGATGGGGGAAAGAAGAGATGAAAGAAGAAATGAAAGAA GAGATGATGAAAGGAGAGATGAAAAAAGTAGAGATGAAAGAAAGAGAGATGAAAGGAGAAGAGATGACAG AAAAGATGGGGAAGATAGACTCAGGCGCGAGAGAGACCGCACTCTCTCTTCAAGAGATGTCAAAAACAGA GATGAAGAGAGGAGTAGAAATGATCAGGAAAAGAAAGAAGATGTAAGGAAGGAGGGAGGACTTCCAAATG AACCAACAGGCAGAAGGAGAGATGAGATTAGTCAAGAGAGAAGAAAAGAGGGAGACAAGTCTAAAAGAGA AGAGGGTAACAATCCAAGAAGAGAAAGTCAAACGAATACAACCTTGAATGAAGGAGTAAGAAATGAAGAA AGAAAAGATTGTAGATGATGAAAGAGGGTAAAAGGTACCATAAGTCCAGTACTCGGAATGAAAAGTGCAG AGGTTTCAAAAGGTGTGAAATGATTGTGTCTTAAATACGAAGAAACAGGACTATTTTCAAATGTTGTTTG TCTAGGATGTGCAAAAAAATCATGGACATTAAAACTTATTTGTAATTCAAAGACGGGAGAGAAGGATTTA CTTATTTTTGTACATTCATTTGAAAGTGATGCAGCTCTAAATTTACTGAATTTTTTGTTATGTTCAGGGA ATAAGTTCAAAATATTGCCCTCCTGGGCCCGTTGCATAAAACGTACCATTGATGGTAAATTTGCCATCAA TGGCAACTACCATGATGACAGGGCTCAACAGCCAATCAAAATCAAGGTTTCCATGGTAACTTACCATTGA TGGCAAAGTTACCATCAATGTTAAGTTTTGTTCTATGGGGCCCTAAGGTAAGACTGGACTACCTTCCATT AATTTTGCCTTTCATCAACCAACTGAAAAAGTTTAATCACCATTCAACTTGGTCATCTTGAATATTTATG ACTGCTTGATGATTTCTGATTTCTTGTGAATGTATTTGTTGCATAACTTTTTTAATAATGCAAATGCAAA TGTGATAATAATATTATTTGGGGAGAACATGTAATATAGAAAACTCAAATATTTGCAACAATATATGCCA GTTTATATATATGCTTTGAATTGCAGCTCAAACATGCCTTGCATTTTATGTACCTGTATCTTTTGTGCCT GTCAGTAATATGTAAATTGCAGTCTTCGCAATTGACATGTGCAATAATCATTTTCTCCACTTTTTTTTCT GAACTGGTGCAAAATCCTATAAGTACTACAAGTATGCAAGATTTGGACCTCCTTAAATAACAAAGCTCAG CTGTGGTATAGCTGTGAATACAGACCGGCTAGATTTCATATCACAAAGCTAGAATAATGAAAATCTGTGA AGTGTTACAAAAATATACATGAACAGTATTAATTTTGAACTTTCAAAACTACCATATTTACATGTAGTTA AGATTATTTTGTAATGTCTCTACGTTTGTCAAGTAAACAAGTCATGTATGAGACTTTGATGCATGAGAGT TGGACTTTAGTCTTTTTTGCAAGATAAATAAACAAAACCAGCCAGGTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds