Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030982063.1 PREDICTED: Strongylocentrotus purpuratus histone deacetylase complex subunit SAP130-like (LOC115922692), transcript variant X1, mRNA AAACGTAGTCGTATCAAACATTTTGGGAAATTTACGCAATTTACAAGGGAGAAGAAAATATCTTTTCCAA AATTGGCAACATGAGTAGCCACACCCTGCCCCCAGAGGGAGGGGGCGGCAAGGGGCCAGCCAGCCAGACT TCCTCGTCCCAACCCCCCAAACAACAGCAGCAGCAGACACTGACGCAAAAGCTCGTAGCAGAGAAGAAAC CGCAGGAAAAGGCGAAAGTGATAGTGCAGCCGGTTCACCCACCGCTGTCCACTACTCTGCCGTTACTGAG ACAGAATGATTCACCAACACCTGTACAACAGCCGACGCCTGCCATCATTGAAACTACAGTGCCAGTCATC AAGTCAAGCATTCCTAATCTGAAGCAGCAGACTGTACCCATTCTATCAGGTGTAGCTTCCACCAAGCCAG CTCTGATCCCTACTATTCCCATCTCCTACACCACAACCACCTCCACCGCCCCTACCACTACCCCCATCAC ACACCCCCATAGTACCAGCTCTGCCACGCCCAACGCCCCTGCCGTAGTCACCACCCAGGCCCGTCTAGCG TACCCGCCTCTAAACGTCACCATGACCTCTGTTGTTCCGACAAGGATCACTACAACCGTTGCTGCGGCAT CAGGCGCGACTGCAGCAGCAGCAGCATCAGCTGCAGGTGGTGTCCCTGTCTCCGGTGTCCAAGCCCAGTA CATCCCCTCTGTGCAAAAGCTACCACCCAACTCGTTACCTGCTGAAGTACCGGGTCATACCAAAGCAGGC TTGGTACCCGCCTCACACCTGGTAGCGGGGGCTAATATGTTAGCAGGGCAGGTGCCGTACATCAGTGGTT CTCCTCTGGGGCTACAGCTCCCACCAGGCACACATCCATACTCTACACAGCTTCCACGTGGACCAACCTC AACTAATCTTAGTCTGGCTGCCACTGGGAAGTCTGGGCTGACTACAGCCTTGTTGACCAGAGCTGGTGTC CCCCAAGGAGCAGTTAGTACTGCCGCGTTTCCTCAGCAGTCCATCTATGGTTACTCTCGCCACCATGCAC CGGGTCAGGTCCATCTCTTAACGCAACAACGGGCAGGGTCACCAGGTGTCCTAACAGCTGGAGCCCTTCC TCGAGCTGCATCCCCAGCCAGTACTCTGGCTTCATCACAGCAACATGAATCATTAAGATTGATACCTCAC ATGATCCCTTCAAGTCAAGGACTGAAACCCGACAGCTCGACCCAAGCCAAGGTTGAACTCAAGATGGTCA TCAAGAAAGACACGACCAAGCCGGATTCCTCCACCAAGACCGACGCCAAAGCAGACACAAGGCCATCATC GCGGACAGAGACCACCGATAAACCTGGAGATGCAAAGAAGGACGGGAAAGCAGAAGAACGCATACAAGGA GTCAAGCTAGCCGTTGCCATGGCGTCTGGCAAGGGAACGTCGGCTTCGGAGAAGGACCCGAGGGACGACG TGGCTCGAAGTGCAGCGGAGGCAACGAAAGTGGAGATGCGGTCTTCGGAAGGGCGCGTGGAGATGAGGGT CGATGTGAGACCCATTCATAGAGGTCCGGAGGTGATGGGACCGAGATGGTCCGTACCGCAGAGATGGGGT GGTCTCCCACCGTCGGGGCCCACAGGGGGTCTACCAAGTCACATGATGACCCAGGTTGTAACCAGTGTAG GGGGTATGCTTCATCCAATCTCATCAGTCCCTGCAGGTACTCCAAACACTTCGTCACATCCGATGGTTAG AGCGCCCCCACCCACGACATCATCAGGCACAGGAGCATCACAGCCCACTGCAACCAATTCAGGCACCATT CCCGTCGCTAAAGTCTATCCCCGCCAACAGCAGCAGCAGCAGACGCAGCAGCCCCCTCCCCAGGTACCCA CCTCCCAGCGGTTCCCCATGCTCTCTGATCAGACGGCGGGGCCTGCCTATATCCAGATGCATCGGAGCTC ACCGGGCGTGACCGCCAGTACCCCGGCCTCCACCCACCCTGCTACCATCTCCACCACGGTGCCGGTCCCC CACACCACGCCCGCGGGGGCAACAGAGGTCAAGATGGAGAGACCACCGCCCCACGGATATGCCCTCTCAT ATTATTATCATCCAGATTTAGGTTACCAGCATGCTGTTGCTATGCAACAATATCCTGGTCGTCATGGTTA CAACCCAATCATTAGACCGCCCGTTGACGGTCAACACCGATTACCTCATCACCCTGGCTCATCGTTGAAT CAGAACAGTCCTGTTGCAGCAGCATTAGCAGCTACAACCCATGCAGCCAATATGGCTGGGGCCCCCGGAA GGCCAGGCCAGCTGACTATGATGGTTGGAGCAGATCACAGGCGGCCTATTGGATTGCAGGGTAATACTAC CCCGGGGGTGCCCAGCACTAGTGTGGGGGAAGGATCAGCCGAGGGCAGTGTTCCTTCGTTCACGATGGCA CAGGTACCGCCCGGAGCCCTGGGGTTGACCCAGGGTCAGATGCCTCCATCCTCCGCAGCCAATCCCGGTG CTTCCCCTCGACCTAGTATTCTCAGGAAAAGAAATAATGATAGCGCATCAAGCCGGAAACCCGTCATGGC CAGCGCCGTCATGTCACAACCAGGTAGCCCAGGGGTCAAAGTTGAAATCACAAGAATACCGGTCACAAGT AATTCACCAAAGCCAAGTGATTCATTACCCAGTAGTCAACATTCAGAGAACAGCAACGCCTCTGAGACCA GCACAGATACTGCACCCCTCTCTACCGGTAGTGGTCCCATCTCCACCGGTCCTGGTCCTATCCGCATCAA GCAGGAGACAGATACCAACGGACTGGACCTGGTACCCCTCGGTGGCTCGGCCTCGACGCACGAGAACAGC ATTAGCAGTTTGGCGCCCTCAGTAGGTAGTACGGAGGAAGTGGGTCCATCGCCGAGGAAGAAACCCAGGA AACAGCAGCACATTATTGCCACGGAACATCCGATGATGCTGGATGATCAGTCAACGGATGATGAGAAGGA GACCAAACAGAAAGTGCCTTTCAAGCTGCATAAGAAAGAGAAGAAAGAGAAGAAAAATGCTGCTAAAGCA GCAGCCGCGGCGGCAGCAGCAGCCAACGCAGAAGCAGAGGCCATGAAGGTGGTACAGTTCTTCAAGAGAC CATGTCCAAGGCTGGTAGATAACTACAGACAATCCTGGAAGCCGGCTCATAATCACTTTGAGAAGTACTC GGATGTCAAACCTAAAGAAGAGAAGAAGATTGGTATTCATGAAATTGCCAACCAGCGAGGTATTCTAAAG AAGACGGATGGCTGGAAAATTCATCATATTGCCTACCAATTTGAGGATTTAAATTCAATGGAGAAGGATT GTTATGACGAGATGAAGTCGATGAAGGATGGTTTACAAGGGATGAACAGCAACAGCAAACTGAAGGAATC AGAAACGCATAAACTCTCAGAACTCGTACAGGGGTCGATACAAAGGAGTCAGTACGTGATGGAATATTTA GAGGAAGCAAAAGGAACAATACTCAAGATGCTCGACCACAAGACAAAGGTTGCTGGCATCGTCAAGAAAC ATGCAAACAAGAGACATGTCAAGAAAAAGCACAGTCCCTGAGTCCAATGGCCGACCGTTCACGTCGTGTT CTCGGCAACAAAAAACTCTCACCGTGGACAATCATTATTTATAGGGTCAGATGGGGTCAAAGTATGTTTA GGTCAAATCAAATGGCATCAGGTCAGTTCAGCAGTGGTTCAGCAGAGATTTTGCATCTATAATTGAAATA TGGCGATACCAACAGGTTGGACTCTATTTACAGGGAGTTCAATGCGTGGTGGGAAAGCAGACTGGATCAC AATGGGGAACTCCCCGAAAATGCCATCCTTGAAATCTACAAACCATGAGGAAGTGCTCTTTTGTCCTCTC TCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCACGCTAATCACCTGCTGAGTACAGCAAGGCGTGACCAAGCATTGGAAATGGATGTATCACACGAT CATAAAGATATTGAAACTCCGAAGCCTTGTCCACACTTGACACGATAGCCACCCTAAAGAAAAATGAGCT GCAGCAAAATAGAAACATTGTGCATGCAAGTAAATGACTAATAGAGAAGAGTAAAAGCAGCTACAAGCTA TGAAAGCTCCTGAGCATACCTGTTTATCTCAATGTATGAGATGCAGAGTCGTGAAGTGCACTACGTTTAC TGCATTTTTTTTTTATGATGCTGCAGCATTTTTTGTTTGATGGTTAATATTTTGTGTGAACAAGGCTTTT GCATATCTGTGAGGGAAACTGGACACAAAGTGCACTGAATTTAATAGCCTAATATGAACATCTGGACCCT GTTTCATAAAACTTGATATCAATAACAAGTTACAAGCTACTGTTATAAGCTACCGAAATCATGGCATCTG ATTGGCCGAGAGCAAATTTGTCATAGAAATATAGCGTTTGTTATTGATAAAAAGTTTCATGAAACAGGCC CCAGAATGTGTGACTTGTGTACTGCTAGTAAAGCAAGTTATACTTCGAGCTATACCATTAAAAATAGATT TGATATGGATGAGTATTTAGACAAGATTTTAATTTCCTCACATTACAAAGCAACTGAGAAGTGTTATTGA AGAATAAAGCCATAGTTTACTAGAAGTTGACATTTATCGCACAAATACAAGGAGTGACGAGTCGGGGGTG TTACAGCGAGGCGTTCGTGAAAGAGGTGCTATTTTTGAAACCTTGGTTAGATGCATTTGATGTGAAAAAC AGTTGATGAGTTTTTTTTTCTGATCATGAGATTTAAGTACAACTTCGGTGCAATGGTTTTAGCAGGGAAC AAAAATCATGATTTTATTGATTTGTTCTGATCAGTTTTCTTGAAAAACATTCCATGTTGGGAATATAAAG AAAAAGAGGGATGTAGCAAACTACAAAGTTTGTATTGTAGCATGGCTTGATACATGTTTGGGCACAGTCT ACATTGCCCTCCCCCCCCCACCAATTATTTACATGGGGCCAATGCGTACAGACCCTAACACTGTCGCTCA TTTCATGAAACCGTTATCCCATTCAAACGTGCGTTAAATTCAATACATTCGTTTCAATGAGTTGTCAGTG AACTTGTACTCATGACAGTTTTGTGAAATGCTCCCCTTCACCCCTTAATGACAAAAGGTGATATGGAGCC CAGAATATTGATTTCAAGATATTGTTTATTAATGGCTCACCACCTGAAATAAGAATGTGAAGGTTGTTGT GAGATATTTATAGAACAAACCAAAAACTATGTCTTACCATTCATTACTTCACAATTGTTGAGTGGTCTTG ATATTTTGAAACCTATCAAGCCATTCATATGACGTCCCAGCCTCTTTTTCAGTCATGCTCAGATTAATTG CTAAAGGTGCGACTCGAAGCATTCTGGACTAGAGACCTTTTTAGCGTAACCATTGATTTGAAGGCGTCGT TTAACAATGCCAAATCTGAGATGCAAGGCCCTACGTGTTATCAGTGTCTCTGATATGGTGTAATATCAAA GCCCTAATAAATTTGCGCTTCAAAAAAGTAAGAATCTTTGAGTGAACGGTATTACCATACACATTTTCCC CAATAGACGGTAATGTTAAAAAAATCGTTGGGAAAACAATTTTTGAAATTATCTTGATAATCAAACATGC CATTGGCTTGTAAAAGTCATGGGATTCATTTCTGACCTTAAGTTTGATAATTATGTTAGCAGCACAAGCT AAATCCAGGATTTTGTTTACAATCAGAGGCAAAGTTACCCAATACCTTGAATGAAACTAAATGGATGGTG GCTTTAAAGGTAGTGTCAACTCTTTGTTAAGGGTCACAAACAGTGGGAGGGGGGGTTGGGGAATAGAACT GAACATTGAGCGATTTAGCTCTCGAAAGCTCCAAAAGAGCTCTGGTATATTGTAATGGAGCTCTGGTAAC AAAAAAACACGATGAAATACATTTATATCGCTGTTGAAATATCACAACATTTCTTAAAAGGAGCCCCCGT GAACAGAACATTATTTTTGTACGTCTAAATGCCCTTTGAGAAGTAGAATGGTGCTTGGCAGACGACATGG TTTCAGGCCGTGTCCTTAGCATACAAAGAATGTGTGTGACATTTATGATTGGACATGGCTGCAGCCTCTG TCATAGTAGTAATTGGTTACATAACCTGTAAGGCATTATGACAAAGAATTATGATTGCAATTTTATTAAC GAATAAATGTTATGTCTGCATACTCGCTTCATCATAGAAATCATTACTTGCTGCAGGAAAGGTTTTTTTA AGAGTAAAACTAATCTGAAATTTTGACAATTTGAGGCTTTCAGTCACACCATCTGGTAGCTATACTGAAA AGGCTATTGATGTAATAATCTATAATTGTCCTTTTCTCTAAATTAAAGCAAGCAGTGCGAGCTACAGTTG TTCGACACCTGCTCTCATGACAATTTTCTGAACTAAAAGAATTCCTAACTTCAACCTTGGCTACAACACA ATCCCTAACCCTTACCCTAACTCTTATCCTAACCAAATCTCAACCTAGGACACAATCGCAGCCCTGACCG TAGACCGTAAGCTTCAATTCTTTGAATGTCTGTTGTTCCACTGACTGCCTCTTGATGGGGAAGGCTGAAA AATGTCTTTTCCCCCTTTTTGTAACAATAAAAGGAGGTTATTTCTACATCTTTGGAGGAAAAGTTGCCCA AATGTTAGATCCCCTGGCTGGAAGTACTGCGACACGATCCGAGAGAGTGAAGAAATTGCCACATTTGGAG ATATTAAGAGAATGTTGTATACAAATGATGTCATAGTGAGTTTATGTTGTAATATATTGCTGTTGTCTAA GGACCAGTACTGGTTCATTATTATTACTTTGTATTATACCTGTACATAAAGATGTCAAATACCTGTAGCA TTCAGTTGAATCTTTTGTTGTTGACTTTTTGAACAAAAAACAAAAAAATTACATATATCAGACGAACTAT GATGTCTGGAGAAACTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds