Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_783776.5 PREDICTED: Strongylocentrotus purpuratus chromatin target of PRMT1 protein (LOC583887), mRNA TTGCATGCTCAATTCTGTTAGGCCGAGTTGTTTGGGTACCTAGTTGGCATATCGTGTAAGTGACGTTGGC TGAGCTGGAACGCCAAATTAATTTTCCTCCGTTTCAATTTGCATTGCCCGTGATTACGGATAAACGGATC AAGAGGAATTCAAGTCAAGACAGTTGAAATCAACTTCCACAATGAGTAACGTGCAGCCACCCCCAAAAAT AGTGCTCAAAAGCACGACCAAACTTACTCTAAATGATCGGTTTACCAAGATGATCAAGGCAGCGCCGGTA TCTCCAACAGCAAGGAAAGCTGGTGCAAGGCAAGATACTCAAGTTTCTCAGGCCAATCGTCGACTTGCCC AGCAGATGCAGAATAGACCCTCTGTTAGGGCAGCATTAGGCATGCAGGCACCTCAGCAGAATCAGCCTCG GCCTCAGCATCAGCAGCAGCAGCAGCAACAGATGCCAAAGCAGAGTGTACAAGCCAGACTGGGTGCTGCC ACCCAAGGACAGAGCATACAGCAACGCCTGGGCAACATGCGGGGAAGGGGCGCTGGTATGAGAGGGAGGG GGGCTATGAGGGGGAGGGGGGCTGGAAGGGGTGGTATGATGCAAAGAAATAATGCACAGGTGGGTATGGA AAACATGGGTGGTATGGGTATGCCCAGAGGGAGGGGTAGAGGAAGGGGCATGATGATGAGCAGGGGAGGT ATGATGGGGCCAAGGCAAGGGCTTAGGAGACCCATGGGACGAGGGATGATGGCTAAGCAAGGACAGAGGG GCATGAGGGGGGGTAGATACATGGTCCGGGGGCGAGGAGGGGCGATGGCAGCAGCGGGTGGACGAGGCGG AGGGATGGCTCGTGGAGCAGGCAGAGGGATGACGAGAGGAGGTATGCAGAGAGGGGGAATGCAGAGAGGA GGGATGACAAGAGGAGGCATGGCGAGAGGGGGAATGACCAGAGGAGCCATGAGACAGCAGCGAGGACGAG GAGCCATGACAGGAAGAGGCGCCGCGGCAGGAAGAGGTCGCCAGGCACGAGGGCGTGGCATGAGGGCACG TGGTGGTGGTAGGGGAGCCCAGAGGGGGCGTGGTGCTGGTGCCCCTAACCCCACGATGACCAGAGAACAG CTGGACAATCAACTGGACGCTTACATGTCGAAGACCAAAAACAGTCTGGATGCTGAGCTAGATGCATACA TGGCTGACTCCTAGGGCCTGCTGCATTGTTTTGTTTTTGCTTTGAAATATGTACTCTTTTTCTAAGTCAC TAGATGTCAAGGGGCATAGAAGATCTTCAAGAAATCCTGTATATAGTTCTTTTTATATGCACTGATTTAG GGAAGAAGAAATCAATATTCTGTTACCTGTTGTGGGATTATGTAACATTCAGGATTTTTAGAAATATATG TACGATTCGATTGGGAGTAAAAATATGATTTGTTTTTAAAAGAAGAGACCCTATTTCACTTTCCCTTTGG AGAATTGCAGATTTACAATATTAAATGAAAGTCTCTTTATTATTATATACTCTGTTCCCAAAGCCTTCAG CTCTGTATGTAGATTGTATCTTTTTAATACAGGGCCCTTGGACAGGCCAAGGAAAAAGAATCATTTTCAA ACTGAAAACAGATACTAGGCTTGAACTGTACACATTTTATTGATACATGTATTTTTTAAAGAAAAATAGT TTTTACTTCTCGATTATCAACATTAAAGAGGACAACAAAATAATAATTAGATACTTTAACTGGTCATCAG TTTATAGTGCCCAAGAAAGTGATGCCTGTTTGTCAACTAAGTCCACTCAAATGAGTTAAGAACAAGTTTG CTAAGTCTTGTTGAATTCTGGTGCATTTTGAAGATGCAATTACATATACTAAACAGAGTTTTTGTTTTAA GAGCCACTGCATTGGTACAAGAAAGAAGTTGCAAGTATTCTTTTTACATATGTCCTATCCATCTCTTCTT TTTTTAGCAAAAAAAGGCGAACTATCTCACCACAATCTTCCACAGCATCTTGTATTGAAATTGTAATGTT GTATCTACTCAATAGAAGTTTTGCTGAAAATGTTTGAAACTGCCATATGAAAGGTTGAAATCATGTACAT CATGTAATGCGCATTCATTTGCTATTGTATTTGTAGACAATATAAAATCTCTACATAAGGCCCAACCTCA TTTTGGTCCGCAGTTTATGTTAATTGCTTTAAGTTTTGTGAGATGAATGAATGCATACCAGTAACTGTAC ATATAACTTCAATCCCAATCTCACCACGTATGGCAAATATTTCCCTGATTTGTCTGTAATATAACATTTA ATCATCTAATTACACTACAAGATTGATATGTTTAGAAAGTGTTATGAAGCGATCTCAAGCATGTGAACGA ATTATAGAATAAAAAGAGACCTTGAAATGGTAAGCTACAGTAAAACCAGGAAAACAAACATATTTTTCTT GTATTCTAAGACTACACGGTTGCAGATAAATTCTGGATCTTTTAGAGTTTAGGCTACCATAATAGCCTTT GTTAATCATTGCAGCTGGTAAATAAGAATATTGTCAACATGAATGCAGTATTCTATTTGAGTTCATTCAT TTCCAAACACAAAATAAAACACTATATCATGTTGACATGTGCAGGGCATTTTTGATAATCGTTTTAAACG AACTTACAATCAATTAATGTACAACATGACTTGGATCACAAAGAACTAACGGTTACGTCAAATTTTTCCA TAATGTACGAGCAATTGCATAATTTGATTTTTTTTTTAAATTACCAAACACCTGAACAAAACAAATCAAG AATTACCTACATAAGTCAAAATTTTATAAATGCTCTAAGGCGAACCTGTTCCATAATTAGAGGAAGAAGG GTAACAAAAATCAGGGAAATGAATCGTAGGGGGCTATGTTAGTAGTGTATCCTATATTTTGAAATGACAT GACAGTGTTGGGACCTCCACCCCCAAGCTTAAGATATTCCCTTGCCTTATAAATTGTGAAATGTATGTTA ATTTAAAATTCCACATCATCCAATTGTTTTGTATTCCAGGTACTTGTCTTATAAAGAGTTCCAATTTGGA TAAATCACAAGTGCTGTAATCAATCACAACTTTGCAGTCTTCTATCTCTAATGTACATCGTTCAGTTGAA ATCAACTCTTTATAAGACGGGGCCCCCAGGACTGTGTATATGTTATCATTTTCTTTGTATTTATTTATGA ACTTATACATGTCCTTTTTACATTGTTTAGATTGAAAAGAATTATGGTGTTGCTTGTTGTGTGAGTTCAT GATTATACCATAGTGCTTCTTTCAGGCATTCATTCAGAAATATGTAGCAAAAAGATTTCATAGTACATGG TGTAGACAACCAGCGCACATTTTTTTAACAGTTGGATGTAACCATTTTTACATTTGTTTTGAACCTCCAT TATCAGACTTTTTGATGCATTTGTATAATGGCATACTAGGACAAGTATATGCAGAGGCGTTGCTGAACGT GCCAAGTGAATATCTGATCAAATTTGGGGGGGGGGGGGGGTGTGAATGGGGAAGATTTTGTTAATAAGAT TATATAAGCTTGCTGACATTAGTTACAGTTTGACCACTTGCAAGTCGTAAGATTCAAAATCTTGCGGACA TATGCAACACCTCTGCATATACTTGTTCATTTGCATACTTATCAAAGTGTGATGTACATTGTGCTTTGTG TTTTGATAATAAAATGCTATTCAATAATACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds