Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT113068.1 TSA: Strongylocentrotus purpuratus WHL22.408494.0 mRNA sequence CGCAAGTTTATTGCAGTTGCATCTATCCTGCAGGCTGGCTGTACCCAATCGTCTCGGATATCAACTTACT CTCATTACTCTTGGAGAATCTCTAGTATAGCTCTACTTTTGTGAAATTTTAGTTTTGTGAACAAGCTGAA CATTTTGCGGATTATATTTGTGAAGTATATATCAACGTCAGTCCTGTGAACAAAATTGTCAATTGAGAAA GAGTTTCGGCTTCAAGTTGGTCTTCATTTTTTTCTTACGGATGAGGAGTGGATGCATGCACTCGCTTGCC AGGATCAACGTTGATGTGATCAAGTTTCAAAACTTACTTTCATAAGTTCTATTTTCCAGCCTATTTATTC GTATTACTGCATAAATTCTTAGACAGCATTCATCAATGAAGATGGCGACAGAAAATGCTACTCTTGCAGC CGTCGACGGCGAATTAAGGGTATCGAAAGGAGACAATTTCAACGTGATCGCGGTGAATGAATTGAAAGTC AGCGGGGAAAGTAATAATAACTCCAGGGGAGAGGTCGGCGGAGGTGATGCCTTGGATACTGATGGGAAGA ATATTGAAATCGCGGGAGTTACTGTTCATAAATTCATTGGAAATAACGAGGGCGATAATTCAGAAGGCCA TACAGCAGAGGATTTACAAAACACATCACTGGATCAGCAGCACCCACACATGATGGCAGCGCAGCATCAG CTTCCACCAGGCTCTATATACCAACCACAGTTCGCCCCTCAGAACGGTCTTGAACCCTACCAGCAGGTCC CACCCGGAGGCCAGCCCCCAGCAGCCTACCCACCCGCCCCAGCCCCAGTACCTCAGCCCCAACCAGGAGA GCAACCAGTAGCGTTGCCGGGGTACTCACAACCGGGCGAAGTGCCTCCCGGATACACGCAGACAGCGGAA CAGTTCTCACAAGCACAGGCTGCAGCCGCAGCAGCACAAGCGGGAGCCGAACAGGCGGGCGCAACGTCAC AACCTAACCTTCTTAGTCCTCAACCTGGCGATGCACAAGCGTCAACGAGCCAACCCCAGCCTTCCGAAGT GGTCGGCCAAGCAGTAGCGGTAGCAGCAGGAAAGCCCGGTGAATCCCCCAAAAGACTTCATGTCTCAAAT ATTCCCTTCAGGTTTAGGGATCCTGACCTCAGGCAATTATTTGGGGCCTTTGGCACCATTTTAGATGTTG AAATCATCTTCAATGAGCGGGGAAGCAAGGGGTTCGGTTTTGTTACGTTTCAAAGTAGTTCGGACGCCGA CAGGGCACGCGAGAAATTGAACGGCACTATTGTTGAGGGGCGAAAAATTGAGGTTAACAATGCCACAGCT CGGGTCATGACTAACAAAGTCAAAACAACCACTGCCAACGGTGAATACCCCACAGCAGGTCTGGAACTCT TGACCACCAATGCACTAAGGTCGCAGGTCATAGGCAGAGGGCGTGCCGCAAGAGGGGCCTACGCAGCCTA CCGTATAGCAGCCCCTCCTCCGGTACCAGGCTACGCCACCGCCGCAGCCCTCTACCCCGCCGAACCAGCG GCTGCTGCCCTCTACCCGGCCGATAGATACCCGACTGATCTTCTCTTGCAGAGCGCTGCCGCAACGGCCG CAACATACGGAGGCTACATCAGCCGCTACGCCACCCCCACAGCCTACGCTATCCCCTACGGCAGGGAGTA CGCAGCCGACCCTTACCATCACGCCATCGGCCCAGCCACCGCATACGGAGTAAGATATCCCTCTCTTACA AGGGCCAGTCTTTATAGAGGTGCTTACGCAAGGTACACACCTTACTAAGAGCAGCAGGCAACCAGTGGTA TTCCTTGATGCAGCTATTCATCTTGTCTTAAACGATGTTTACTGCATCCAAAATAACTGAACATTTTTTT GATTCAAGAAAGCAAGAACAAAGAGAGAAAGCAGATGACCATTTTTATGAGCTTAAGAAAGTCGGAAGGA AATTCTGAGACACGATCTGTGGTTTATATGAAGCGTGCTATAAGGGGGAAGGTGATTGGAAAGGCACGAT GACATCAAGAGGTGCCAATTTGCTGATCAGTACATTTCTATAGGGATTGGCAATAGGAGGAGTTCAACTC GAGTAGTGTTGGTACCAACTCATCTGATATACGGCATCTCATCAAGCTCAAACGTTTGAAAGAAAAACAA ACGGCTTTCAACTCTCAATCCTTCCCGACGAATACAGGGAAAGGGTTTATTACAACTTGATATCTACTTC CAATTGTTCTGACTTTATTTTTCATTTTGTATTGTATAAGTATACAATGTATGATACCTCTACAATGTTT TTCTTTTCTTAAGAGGATTGTAGGAAACTACTCTATTCAGATTAAAATCTTTTATTGATGAAGGTTGGTA TACCAAGATGTATTTGGTAATGTACTGAAATTTCATAGTTGCGGGACAAGTCTTGAATACTTGATCCCGC GATGGAAGGTGTAAATTCTACTCAAACAACTTTTTGCTCATTCTCTCTCCCTCTCTCTCTCTTTAATTCA TTTTCAATTCATGTGTGCTATAGAGGGATGTATGTCTTGTGACATAAAATGCCTCAATATTTCTGCCAAA AGTATCAAGTAGAGCCTATCTCATGGGTACAAACTAATTCTCGCAATGACGTTGTGGAGCAGAAAATGGT CTTTTTGAAGATTTTTTAATCATGCACCAAAGCAATTGTCTCATTTTTTGTGGAAAGACTTCTTTAAGTT CACAAAGAAGAACAAAATTTTACCAAAACATAAGCTGATGTGCTAAAAATGAAGAGAAGAACCCAGATTG GGAAACCCCCTAAAGCTGCAGTGGAGCATGCCATTACAACACAGAATCTTGTCATGATAATTATGGCCAT CACAGGAGAGGGGGAAACAGGTTTGTCGAGGGACAAATGTCACTCAAATTCTTCCAAACCCCCCTTGAAG TAGCTATAGGTGAATCCAGAATGAATGCACTGCCTAAACATTGGAAGATTTCAATATAACTTGTGGGAGT CCATCTTTAATGGAAGTAGCTGTGAGATATGGTTGGCATTACAATAGGAAAGGGTCTTAAAGCATGATAT AGATATCATGTTCGATCAAAATGGACCATTCCATTTCATTGAAAGGGAGTAGATGTCGTACATAAATTGG CATAACAATGAAAAACGGTTAAAAACACATGATATTAATGTCCATGTTGTATTGGAATGTTCCATTTCAT TGAAGGGTGGCTCTGATAGAGAACGATGGACAAAAGTTGAAGGAAAAAGGGGTTCGTTGATGGTTTTCAT GCTATAAATGAAGAGAAGAGGAGAGAAAAACATGGTGCTACCAATTCTGGTTGTGTGTTGGATATCACCT GCTGTTTAGGTGGTCTCTAGCTTTTAGAAGGAATCTGTATATTTATCTGTAGTTGTTAGATATCATCTAG ACATTGTTTCATAGAAAGGAAAATTTTAAAGTTTAAGTATACTGCTCTCTAACCTTGCCTCAGAAATACA GGGGAGTCTGTCATTTCTGTGTTTTCATGATTATTAATCATTTATGTTCAAACTTTTTCAGTATTTTTAC CTTTTATGTTAAACTATTTTGTGTTTGAGTTTCTAAAGCCAGTTCTGTTTTGGAGCCCACATGTTGCTGA AGGAGGAGATATGGTTTTTGTCTTTAATTTATCTTGGCACTAGATGGAAAATTTGTACAGATTTTCGTAG TTAGCTTGAAATTCACTACGTAAGCTTTTAAATGATTTGTGTTAGTAAATGAGCAGAAATCAGACATTGT TGATTATAAGTGTTTGCGACGCAAAAAAAACTCTCTGGAAGTAGTGTGTGAGTGATTGGGAGAGAGAGAG AGAGAAAGAGAGAGAGAGAGAGAGAGAGTAAATTGGAATGTCAGAAGCAAAAGCGTTCGTAAATTTTACA CTTGGGTCAACAACAAAAAAAGCTAAGGAAATAGTGATTCTTTTAACTTTATATTTATTATACCATTCAT GACATGAATATGAAAAAAAGATCTAGCAATCTATTGTATGTATCATAGATTGTCACCGTGTTGATTTTCG CATTTTGGTGCAATGTTTCTCTTGCAAAGTGCGTCTTATATAAGTTGTAACTTTCTTTTCCTTCTTCTAG CGAAAAATGTCAGATGTTGTCGGTTACCCTTGTAGATTTCTATCCTCTTTCTCTGGTTAGTGTGCTACTC AATGTTAACCCATGTATTTTTGTCGTTGATTGTGAATGTATTGATAAATGGCGAGGAGAAGATTATTGTT GTGTAATAAGCATTGGAAATATAAGTATGTAAGTAACTAAGAAAGTGTCTTGATGAAGATTAACTGACTA TGAATATGCCATGGAATTGGACAAGCTTTACTGCCAAACTTGTAAATTGTACACAAAGAAGAATTACTTG TGAAAGACAAAGTATTCTCTTCATGAATCACATTTTTATTTTGGCTCACAACGCTATCAGAAAGAATAAT CCTATGTATCAGGGATCTACATCGGAATTCAAATTCATATTTTGATAAGACAAAGCCAAACAATTTGAAC AAAATACTACATCACTTTCACTATCGGACTACCTGTATTTTAAAAGGATTCTTGTTACTGAAACAGTAAG ACAATGATTTTATCCAAAGTAATACAATTTTGTGCTCCTTATCATCGTGCTCAAATTAAGTGCAAATTTA GACCAGCCATCTTGCTGTGGTAAAAGATAACCAGCGTTCAATCTTTTTGCCACTTTCTGACAATCAGGTT TATTGATAAACCAAATCAGATTCTGTCTTCAAGTTGTCTCGTTCAATGTGGTATTGCACTTTCCCGTGTT TATATGATTCAATGTACATTATTTTCATTTTTTGCCAATTTAAGTTATTACTGTACATTTGTGTACCTTG TCTTTGTGTTTACACCCAATAGTTATATTAATGTTACTGGTTTTCTTTGTTATCTCCTCAATTTATTTTT GTTGTTAATGTTTGGAATACAAATCAAATTATCTTGTAAAGCACTTTGGAGAACAGCTGCCAAATCTTTG ATGTGTAATCCATAAGGAGGACATTTCATTACCATCATCATCTTCAAAGCAACTCTCTGTGCCAGCTGTT TTTATCAACTCCTATGTTATGTTTCAAATCTCCTTTGTAGTTTCAATCGTTAGTAAAGGCAAGATACAAA ATAGGAATTTTTATGATAGTGACTTTTATCATGTGTATTAAGGACAGCTCTTCATAAGATATATATTTTT TCAGTAATGTTTCGTCGTTTGTGGAGACAATCAAACCTTCAGGTGTTTTATGTATCTTATTTAAGAACAC TATACATGTTAGTTGAGGGGAAAAGGACAAAAAGGAAAAGTTGCAATTTATACTGAGCTGTTGTGTGCTT TTAATACAATGCTGTTTTTCTGAGTAATGATTTTATAAATGTAACAAATTTTTGATTGTATAGTATTTCA GGAGATAACGTTTTTATCTCAACGTGCAAATAAGAAAACAGGCCCATCGCCCCCAACAAGATAACAGAAC CTTGTCTTTTTTTTAGCTTATAGAATTTAAAATTAAATTGACGCAATTAATTCTTCTTATTAAATAACAT GTCAAATAAAATTCTCATCTGGATTGTGTCATACCATTTTAACTTGTATAGAAAACAGGGATATAAAAAT TTGAATTGATAAACTTTGGTGAATCTACTGTATCAAAAATATAAGTTATTGCTCAGAATAATTAAGGTCA TTCAATGCTTGATTCTTTTCGTGTATTTCACACAAAATTTCAGGTAATATTGTAAAACTAATATTTCTCA TATTTTGGACTGCCTCCTGTGTTTTGTGAAAGAGGCTGAATTTTCAAGTGGAATAGTTTTATTTACATAG TACAAAGCTGCAAGTACAATGTACGAGGCATTAATTTGCATGCCTTTTTTTCTCTCTCTCACAACACTTG TTATTTTTATCTTTTCGACAATCATTACATTTTAAGGTGCCATCTTATTATGTGTCAAAGGTTTTTAAAG ATGTTTTTTGTCAATAGTCAAGCATATATTCTTACTAATTTATATTTATGTTTCACTTGATTTGTCGCCG CTGTGCAAGTGCGATTCATTCATTATTTTCATGTTCTCAGCTCTAGTTCTGGGACTTGGTCATCTTCAAT TTGCCAGTGTTTTACGGCACTTTTCACAACCTTTGAATAGTCAGTTTTTTATCCGACATGTTTTCTTGTA GTAGACTCGAGTTTGTAGAATTCTTTTTTTTTTGTCTATTAAGTGTAGTATATTTTTCCCTCATTCATTC TCTTTTCTAGACAGTTGTTGATTTAAAGAAGAGATTCATTGAAGAGATGAAACTTTGGGGCATCAAATGC ACAGAAGTATTATTGTAAAATCTTAATTACAAAAAAAATATTAAAAATTGTACAGATTCAACAAAAAGAC TATTTGTGACATGTATTTTATTTGTGTGTGTGTTGATTAATCACTTTCCTTCTTTCCTTATATCTACATT GTATCTCTTTTGATATTCAAGTGTTCCTAATACAAGACCGTGGGAGAGAAATGATAAGTGAGAGAGAGAG AGAGATAAAGAGAGGGAGAGGTGAGAAATAAAGAGATAGGGTAAGAGAGACAGGATGAGAGAGTAAGAGA GAGAGGGGAGAAATAAAGAGACAGAGTAAAAAAAGACAAAATAAGAGAGAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds