Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011678400.2 PREDICTED: Strongylocentrotus purpuratus RNA binding protein fox-1 homolog 3 (LOC100890824), transcript variant X11, mRNA AAAGTGGGCAGCCAGGCATGATGGGTTGGCTGTCACACCACGATGGTTCTTCGTCCAAACCCTAGTGGTG CGTGTTCGATGACTGTGACACCTCCATAGCCCATCTTCGCTTCCTAAGTCTATAAATCTGTCATAGAGGC CCCTCGGCGGCTTCTTTTTACATCCCATCTTTAATCCGTAACCACCATTTTAGTTACATCTCCCCATCAT CATCATTCCTCCACCTTGCTCAAGAAGATGATGCGTTCCTTGGCTGGTCCTCTCTCTGTATTCCTCCAGT CCAGTCAGTGGTGATCTTGTAAAACGGATACCGGTGTTAATCTCAGTTGTCCTTCCTCTGGCTCTTGTCG TCATCTCCCGGCCTTCTGTCAAGATTTCGTTTTAATATTCCCTGTTTACGATAACATCATTCGTTGGTGA TTGGTTGCTGTGTCATCTGGGAAGCGCGGCAACGGGCGTCGTCTTTTCATTAGCATATGGCAGAAAAGCA GCACCCACACATGATGGCAGCGCAGCATCAGCTTCCACCAGGCTCTATATACCAACCACAGTTCGCCCCT CAGAACGGTCTTGAACCCTACCAGCAGGTCCCACCCGGAGGCCAGCCCCCAGCAGCCTACCCACCCGCCC CAGCCCCAGTACCTCAGCCCCAACCAGGAGAGCAACCGGTCGCGTTGCCGGGGTACTCACAACCGGGCGA AGTGCCTCCCGGATACACGCAGACAGCGGAACAGTTCTCACAAGCACAGGCCGCAGCCGCAGCAGCACAA GCGGGAGCCGAACAGGCGGGCGCAACGTCACAACCTAACCTTCTTAGTCCTCAACCTGGCGATGCACAAG CGTCAACGAGCCAACCCCAGCCTTCCGAAGTGGTCGGCCAAGCAGTAGCGGTAGCAGCAGGAAAGCCCGG TGAATCCCCCAAAAGACTTCATGTCTCAAATATTCCCTTCAGGTTTAGGGATCCTGACCTCAGGCAATTA TTTGGGGTAGGTCCGCATGGACAGGCCTTTGGCACCATTTTAGATGTTGAAATCATCTTCAATGAGCGGG GAAGCAAGGGGTTCGGTTTTGTTACGTTTCAAAGTAGTTCGGACGCCGACAGGGCACGCGAGAAATTGAA CGGCACTATTGTTGAGGGGCGAAAAATTGAGGTTAACAATGCCACAGCTCGGGTCATGACTAACAAAGTC AAAACAACCACTGCCAACGGTGAATACCCCACAGCAGGTCTGGAACTCTTGACCACCAATGCACTAAGGT CGCAGGTCATAGGCAGAGGGCGTGCCGCAAGAGGGGCCTACGCAGCCTACCGTATAGCAGCCCCTCCTCC GGTACCAGGCTACGCCACCGCCGCAGCCCTCTACCCCGCCGAACCAGCGGCTGCTGCCCTCTACCCGGCC GATAGATACCCGAGGGAAAATAATAAGACTGATCTTCTCTTGCAGAGCGCTGCCGCAACGGCCGCAACAT ACGGAGGCTACATCAGCCGCTACGCCACCCCCACAGCCTACGCTATCCCCTACGGCAGGGAGTACGCAGC CGACCCTTACCATCACGCCATCGGCCCAGCCACCGCATACGGAGTAAGATATCCCTCTCTTACAAGGGCC AGTCTTTATAGAGGTGCTTATGCAAGGTACACACCTTACTAAGAGCAGCAGGCAACCAGTGGTATTCCTT GATGCAGCTATTCATCTTGTCTTAAACGATGTTTACTGCATCCAAAATAACTGAACATTTTTTTGATTCA AGAAAGCAAGAACAAAGAGAGAAAGCAGATGACCGTTTTTATGAGCTTAAGAAAGTCGGAAGGAAATTCT GAGACACGATCTGTGGTTTATATGAAGCGTGCTATAAGGGGGAAGGTGATTGGATAGGCACGATGACATC AAGAGGTGCCAATTTGCTGATCAGTACATTTCTATAGGGATTGGCAATAGGAGGAGTTCAACTCGAGTAG TGTTGGTACCAACTCATCTGATATACGGCATCTCATCAAGCTCAAACGTTTGAAAGAAAAACAAACGGCT TTCAACTCTCAATCCTTCCCGACGAATACAGGGAAAGGGTTTATTACAACTTGATATCTACTTCCAATTG TTCTGACTTTATTTTTCATTTTGTATTGTATAAGTATACAATGTATGATACCTCTACAATGTTTTTCTTT TCTTAAGAGGATTGTAGGAAACTACTCTATTCAGATTAAAATCTTTTATTGATGAAGGTTGGTATACCAA GATGTATTTGGTAATGTACTGAAATTTCATAGTTGCGGGACAAGTCTTGAATACTTGATCCCGCGATGGA AGGTGTAAATTCTACTCAAACAACTTTTTGCTCATTCTCTCTCCCTCTCTCTCTCTTTAATTCATTTTCA ATTCATGTGTGCTATAGAGGGATGTATGTCTTGTGACATAAAATGCCTCAATATTTCTGCCAAAAGTATC AAGTAGAGCCTATCTCATGGGTACAAACTAATTCTCGCAATGACGTTGTGGAGCAGAAAATGGTCTTTTT GAAGATTTTTTAATCATGCACCAAAGCAATTGTCTCATTTCTTTTGTGGAAAGACTTCTTTTAGTTCACA AAGAAGAACAAAATTTACCAAAACATAAGCTGATGTGCTAAAAATGAAGAGAAGAACCCAGATTGGGAAA CCCCCTAAAGCTGCAGTGGAGCATGCCATTACAACACAGAATCTTGTCATGATATGGGCTGTACCATCAC AGGAGAGGGGGAAACAGGTTTGTCGAGGGACAAATGTCACTCAAATTCTTCCAAACCCCCCTTGAAAGTA GCTATAGGTGAATCCAGAATGAATGCACTGCCTAAACATTGGAAGATTTCAATATAACTTGTGGTAGTCC ATCTTTAATGGAAGTAGCTGTGAGATATGGTTGGCATTACAATAGGAAAGGGTCTTAAAGCATGATATAG ATATCATGTTCGATCCAAAATGGACCATTCCATTTCATCGGAAGGGAGTAGATGTCGTACATAAATTGGC ATAACAATGAAAAAGGGTTAAAAACACATGATATTAATGTCCATGTTGTATTGGAATGTTCCATTTCATT GAAGGGTGGCTCTGATAGAGAACGATGGACAAAAGTTGAAGGAAAAAGGGGTTCGTTGATGGTTTTCATG CTATAAATGAAGAGAGGAGAGAAAAACATGGTGCTACCAATTCTGGTTGTGTGTTGGATATCACCTGCTG TTTAGGTGGTCTCTAGCTTTTAGAAGGAATCTGTATATTTATCTGTAGTTGTTAGATATCATCTAGACAT TGTTTCATAGAAAGGAAAATTTTAAAGTTTAAGTATACTGCTCTCTAACCTTGCCTCAGAAATACAGGGG AGTCTGTCATTTCTGTGTTTTCATGATTATTAATCATTTATGTTCAAACTTTTTCAGTATTTTTACCTTT TATGTTAAACTATTTTGTGTTTGAGTTTCTAAAGCCAGTTCTGTTTTGGAGCCCACATGTTGCTGAAGGA GGAGATATGGTTTTTGTCTTTAATTTATCTTGGCACTAGATGGAAAATTTGTACAGATTTTCGTAGTTAG CTTGAAATTCACTACGTAAGCTTTTAAATGATTTGTGTTAGTAAATGAGCAGAAATCAGACATTGTTGAT TATAAGTGTTTGCGACGCAAAAAAACTCTCTGGAAGTAGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGA GTGTGAGTAAATTGGAATGTCAGAAGCAAAAGCGTTCGTAAATTTTACACTTGGGTCAACAACAAAAAAA GCTAAGGAAATAGTGATTCTTTTAACTTTATATTTATTATACCATTCATGACATGAATATGAAAAAAAGA TCTAGCAATCTATTGTATGTATCATAGATTGTCACCGTGTTGATTTTCGCATTTTGGTGCAATGTTTCTC TTGCAAAGTGCGTCTTATATAAGTTGTAACTTTCTTTTCCTTCTTCTAGCGAAAAATGTCAGATGTTGTC GGTTACCCTTGTAGATTTCTATCCTCTTTCTCTGGTTAGTGTGCTACTCAATGTTAACCCATGTATTTTT GTCGTTGATTGTGAATGTATTGATAAATGGCGAGGAGAAGATTATTGTTGTGTAATAAGCATTGGAAATA TAAGTATGTAAGTAACTAAGAAAGTGTCTTGATGAAGATTAACTGACTATGAATATGCCATGGAATTGGA CAAGCTTTACTGCCAAACTTGTAAATTGTACACAAAGAAGAATTACTTGTGAAAGACAAAGTATTCTCTT CATGAATCACATTTTTATTTTGGCTCACAAAGCTATCGGAAAGAATAATCCTATGTATCAGGGATCTACA TCGGAATTCAAATTCATATTTTGATAAGACAAAGCCAAACAATTTGAACAAAATACTACATCACTTTCAC TATGGGACTACCTGTATTTTAAAGGGATTCTTGTTACCGAAACAGTAAGACAATGATTTTATCCAAAGTA ATACAATTTTGTGCTCCTTATCATCGTGCTCAAATTAAGTGCAAATTTAGACCAGCCATCTTGCTGTGGT AAAAGATAACAAGCGTTCAATCTTTTTGCCACTTTCTGACAATCAGGTTTATTGATAAACCAAATCAGAT TCTGTCTTGAAGTTGTCTCGTTCAATGTGGTATTGCACTTTCCCGTGTTTATATGATTCAATGTACATTA TTTTCATTTTTTGCCAATTTAAGTTATTACTGTACATTTGTGTACCTTGTCTTTGTGTTTACACCCAAGA GTTATATTAATGTTACTGGTTTTCTTTGTTATCTCCTCAATTTATTTTTTTTGTTAATGTTTGGAATACA AATCAAATTATCTTGTAAAGCACTTTGGAGAACAGCTGCCAAATCTTTGATGTATAATCCATAAGGAGGA CATTTCATTACCATCATCATCTTCAAAGCAACTCTCTGTGCCAGCTGTTTTTATCAACTCCTATGTTATG TTTCAAATCTCCTTTGTAGTTTCAATCGTTAGTAAAGGCAAGATACAAAATAGGAATTTTTATGATAGTG ACTTTTATCATGTGTATTAAGGACAGCTCTTCATAAGATATATATTTTTTCAGTAATGTTTCGTCGTTTG TGGAGACAATCAAACCTTCAGGTGTTTTATGTATCTTATTTAAGAACACTATACATGTTAGTTGAGGGGA AAAGGACAAAAAGGAAAAGTTGCAATTTATACTGAGCTGTTGTGTGCTTTTAATACAATGCTGTTTTTCT GAGTAATGATTCTATAAATGTAACAAATTTTTGATTGTATAGTATTTCAGGAGATAACGTTTTTATCTCA ACGTGCAAATAAGAAAACAGGCCCATCGCCCCCAACAAGATAACAGAAACTTGTCTTTTTTTAGCTTATA GAATTTAAAATTAAATTGACGCAATTAATTCTTCTTATTAAATAACATGTCAAATAAAATTCTCATCTGG ATTGTGTCATACCATTTTAACTTGTATAGAAAACAGGGATATAAAAATTTGAATAGATAAACTTTGGTGA ATCTACTGTATCAAAAATATAAGTTATTGCTCAGAATAATTAAGGTCATTCAATGCTTGATTCTTTTTGT GTATTTCACACAAAATTTCAGGTAATATTGTAAAACTAATATTTCTCATATTTTGGACTGCCTCCTGTGT TTTGTGAAAGAGGCTGAATTTTCAAGTGGAATAGTTTTATTTACATAGTACAAAGCTGCAAGTACAATGT ACAAGGCATTAATTTGCATGCCTTTTTTTCTCTCTCTCACAACACTTGTTATTTTTATCTTTTCGACAAT CATTACATTTTAAGGTGCCATCTTATTATGTGTCAAAGGTTTTTAAAGATGTTTTTTGTCAATAGTCAAG CATATATTCTTACTAATTTATATTTATGTTTCACTTGATTTGTCGCCGCTGTGCAAGTGCGATTCATTCA TTATTTTCATGTTCTCAGCTCTAGTTCTGGGACTTGGTCATCTTCAATTTGCCAGTGTTTTACGGCACTT TTCACAACCTTTGAATAGTCAGTTTTTTATCCGACATGTTTTCTTGTAGTAGACTCGAGTTTGTAGAATT CTTTTTTTTTTGTCTATTAAGTGTAGTATATTTTTCCCTCATTCATTCTCTTTTCTAGACAGTTGTTGAT TTAAAGAAGAGATTCATTGAAGAGATGAAACTTTGGGGCATCAAATGCACAGAAGTATTATTGTAAAATC TTAATTACAAAAAAAATATTAAAAATTGTACAGATTCAACAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds