Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT103349.1 TSA: Strongylocentrotus purpuratus WHL22.699183.1 mRNA sequence TCCTAGTTCAATCCAAGTGAGAAATTAATAGGGACTTTCTGGAGACCATTATGCATTCTGATGGTGGCAA TAATAGGAAAACCCATACTGTCCAATTAAGGAGTGGAGATGTTGCACATTACCTGCTCTGATAACTCGGT ATAACCATGCAGGATACTGTTTTTTGTAAAGTGTCAGCAGACGTACTGGTAGGGTATTACGACACGAAGA GATCGATCCATGCATAGATATTTCAGGGCCCCATTCTTTTCAATCACCATTTCCCCCTTCCATTTCTATA ATTAATAGCCCTATAATAATTATAATTATGCCTGTCTCTTTGAAGGCTCCCTATACATGTATTGATCAAT ATCAGATGTATAATATTATGTTGACAAGCTTATTGGTAAAGTGAATGCTAGTGATATAGTAATTTTATTT CTGATATAGACAATGTTTTATTAAAAACGACAATCAAAAAGGGAAATATAATTTATGTACAACCGAGTGT ATGTATACTCCTGTCGTCACAACAGAACAGATAGTAGGCCCTTCTTCCCGCGCGCTTCAAGGTTTCCTCA TTACAATATGAATAACTTATTTTTACCCGATTTCCAGCGATTTGATTGGACCGCAATGAAGTAATGTATG AAAACGTGCCTTATTGGTCCAAGAGCAATACTGACATCACCTGCTATTTTGGGCATTTGATGTCGCAATA TATTGCAATGCAAACCCATACGGAGCACCATTTGACAGAAGATCGTTCGTTGGAAGTAAATGGGTCAGGA ATCGCGGCGTAAATCCCGCGAAAAGAGAGCGAAAGGCGACTTACCGGCAAGAAAAACCGGTTTCTCTCAC GAGAAGTGCTAACAAGGGGCCACCATTAACCCCCACCAGTTTCCAGATTTAGGAATCTTTGATTTTACAG TGGCTACGTACGAGGACGGTTCTTTCTTTGAATTACCATGGCAATCTACGTTACAAAGCTTTCAGGAGGG GCACTCGGTGGAGATGATGTCGCCAGTAAAAGGTGTCGACGGGGTCGGGGCAGTTTGCTACGACCCTGTC GACCGAGAGGAGGCGGAGATGGAGATGGAGAAGGAGGATTATTTATTGGGGCAGGCGTGGGAGAAGACTG CACTACAGAGCATCACTCAACAGAGTGGCCTGTTTAACATAGAAATGGACATGGCCTCAGGATTGAACAC AGTGGATAGTGTCATCGACAGCACCAAGCTGGACCTTTCAGCAACCAGTACCGTGGACCTCACAGAACTC TTCCCTGACCTCACTGAAATCCTCATCACCAATCCTGATGATGAGGGCGTGTCATCACCCCTAGGAGAGG AAGGAGCAGACCTAAGCACCTGCGCCCAATCTCCTGCAGAAGCTAAGGGTGGATTCAGTGGAGGCAGAAG GGGGCAGCTCCCCTCGACCTCATCTTGCAGTGAGATGAGCGATTACGAGGAAGGACTGAGCCCCGCGGAG TTGGACTCGACGTTGGAGCATTTCTTCAACACGTTCGCCAACCTGGAAGAGTTTCTGGTCCCGGCTGAAG AGACTGGTCCTACGTCTACTGTCGATGCTGCCACTGTGCGAAGCCTGATTGATAACCCAACGACTACGGA TAACCAATCATCTCTGGATAACCTGCTGGCTGTCGAAGATGGTTCTTTTGCTCTTTCTACAGTCAACGTT ACAAAGCGACTCAAGGCGGAAAATGTCGAAGATGAGGAGAATACTTGCCAAGTAGCTAAGAAGTCGCGAA CGTCTAAGAATGGAGCTCCGAGAACGACAGCGAGTCCCGAAGAATTGTACCGTCGTCGCCGAGTCAAGAA TAACAAAGCATGTCAGCGTGCGCGCCAAAGCAGGAAGAAGAGGGATAATGATCTTGCATCAACCGCTAAA ATCCTGGAAAAGGAAAATGCAGAGTTGAGGGCGAAAATTGAAGAACTGACAGAGATTGCTGAAATCTCTA GACGTGCTTTGGTCAGTGTTTTAGCTAAGTAAAGGGAACTTTTGTTTTCCCATGGAGTAGAGCTCAAATG GGTGTTGCTTTTGATGGTGAGAAAGGGGATGAAAGGCCATTCAAGTGAAGTCTTGTACACTGAATGCCTG ACGTGGCAACCATTCTTGCTTGTACCTACAAGCCTGCCTTGTAGATCTTTGATCTATCTCGATGATCTCG TACTAGAGTAAGAGTTGATCCTACCAAAATAAGATTATGTAGTATAATACATATATATGAGGATGTGATC AAATTACTTGCTCTGTAATGGGATTTGGTTTTAGTAGGACGTCATGACAGATGGTAAAGAGTAGGTGCAC AAGATAAGCTTTGATACATGGTCTTCAACCCTTTGCACCTTAAGCAACGGACAGTGTCAACTTCGCAGCT TTAGGATAAAAACTAGAATGCATTGTGCGTGTTTATGTTCATATGAACAAATATGGATTTGTTTTATTTG TTTTGTTGTAAATAAGATTTATGATTTAAATGTTATAAGGCAAAAAAAAAAGAGTTTCACTCTAATAAAC ATTTGTTTTACTTTTTAGTTGTGAATATGAATTGAGATGAAATACATACAATGTATGACATGTCATATTT TACTCATACTTAATGAGACATTTACTGTGGTCAGTTTTTTTTGTTTGAAAGTCATTAGAAGTACATTGCT TTGTGTTTAAAGTTTTTAAAGCAATTTTATATACATCAATCTAATCTGAATTAAACTGATAAAATCCAAG CAACACTGATACATTTGCTTCTAAGTGTTGCTTGGAGAATCACCAACAGAACTATTTTTGTTACTGAAGC ACTTATTTGTTGTAAACTCAGGTCAGTTTACATACCACATGTGGTGGGTCCATGGGTATAGATATACCAT GTTGTTTTGAGTTTAAAGAAAGGTATATAATTGTGTTAAGGGGAAAATACACATTTTGTTCAACAGTAAC CTAAAGGTAGTAAAGGAGGGTAAAGAATTTTCCAAATGAAATAAAACATTTCTAAAGAATATTACCATTA TCGATTTGGGGGTTTGTATACAAGTATCACGGTCATAGCTAAAAAAACAAATCATGTGTTTAATTTTCAG TCATGCATGTTTGGAGATATTCAGTTATGCAATAAGTTTTTTTAATTCTTTCGGGGCAGCTGTTTTTCAT GCGACAGAATTTATATACATATCCCATTGGATATTTGATGTTTTGATATCCATCACGGCAGGTGTGTGTA ATATATTCCCTATTTGGAATATAATAAGGTAAGTATAAATAATTAACTTGGGTTCATTTTAAGAACTGTC AAATTATTCCAATGTAATTATAAATCCAAAACAATGCATGCATTTTACACTGCTTGTATGAGGGAATTGT GACAGAAAACCAAGCGGGCTTGTAGTTGAACACACAACTCATACTGTCACATATAAGTGATAATATACCT TCGTTTCTAATTTAAGTCAATGAATATTATTTTTAACAGTTCCAATAAATTGATACTGATAATTTATTAA TGGCATAACATTGTTTGCAAATATTCTTTTTATTGCTACTTTGCTCATGGATAGAATAATTCCCTTAAGT AATATATGTTGACTACCATATAGATGTGCATCTAAACTCACTGATAGGCATCATTTTTTCCTTGTAAATC ATGTAAGAATCTATATTCATTCATCATAAACTTCATTCTGTGATATTATGCAGCCGTTTACCTTTGAAAT TTGAACAGCATGAAAATCCAAGCTATTGCAGTAGAATGAAAACACTCGTCAACATTAAAAAAATAAAAAA TGTTTAATTCACTTCACTTTGATTGTATATAATTGCTCAGGGAAATGTATTTTGTATATTTGTGATTTGA AAAAATACATTTAGACATGAACTTGTGAATATAATGATTTGATATTTAGCATTGTGTATATATTTTCTTA CCCTTCCATTCTCTGTATATTTGATAAAGACTATAGGATGAAAACAGATCTTGAATCTTTTCATTTACGT ATAGTTTTCTTTTAATAATTAACTCTAGATGTCATTCTTTAGTTTGATCATGCATGTTCGGGATATGGAT AAAATATCATGATGAAGAGGGGGGGGGGGGGGGGGGTGGTAACCTTTGATGGATACGCCTTAATTTCGTT TGAAACAAGAAACAAGAGACTGATAGAAAGTCATATATAGTATAGGGAGATTTTTATTGTTTTATAAATA CATGTAGTAGAATTAATTCCATCAAAATTACGATTGTAAATTAGAACATAGGAAAAAAGAAGCAAAACAT TGAATGTTAGGTATATGGTACAATTGGTATTCAATATTTTTGAATCTATGGTAAATTTACACAATACTCA TATGCTGTACTGATGTACTACGTTTATTTTATCTCTGCAAATAGTATCAATTCTATTCTACTCTGAAATC ATTTTGTGAAAATTGAGAATAAAACAATCGTAAAACCAAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds