Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT117456.1 TSA: Strongylocentrotus purpuratus WHL22.658905.1 mRNA sequence GCGTAATAATACGGCATCGTTGCATGTGCTATCGTCTCCATCGTCTCGGCCTGGATGATGAGAAAATTGA TTCCAGTAGAAGTAGAACTCCGAGGAAATTTCGGTAAAAGATGTTGCGAGCTGCCATTTCATCATCGTGG TCACGTTGTGTACTAAAACGACGTTTGAGTGCTGAGTGGAGGAGAAGCTATGCTGTTGTGAGTAAAGCCC AGGAGAGAGCGAAGCAATACCAACCAGGAGACAGGCTCCATGGCTTCTCGGTAGAGAAAGTAGTTCCGGT TCCTGAACTGTACCTGACTGCGGTTCAACTCAGACACGATAAGACTGGTGCTCAGTATCTCCATGTGGCA AGAGAAGATACCAATAATGTTTTCAGTGTTGGGTTTAGGACCACCCCGATGGATAGCACAGGTGTATCAC ATATCCTGGAGCATACAGTCCTATGTGGATCTCAGAACTACCCTGTCAGGGACCCATTCTTCAAGATGCT CAATAGATCACTCTCTACATTCATGAATGCATGGACAGCCAGTGACTACACGATGTACCCCTTTTCAACT CAAAATGGCAAGGATTTTGAAAACCTTCTCTCTGTCTACCTCGATGCTGTATTCTTCCCAAGACTGAGGC AACTGGACTTCATGCAGGAGGGTTGGCGTTTAGAAAATGAGGTGACAGAAGACCAATCTACTCCCATTGC CTTCAAAGGAGTTGTCTTTAATGAGATGAAAGGTGCCATGTCCGGTCCAGACCAGCTGTTTGCTCACAGT CTTCAGAGTAAGCTCCTCCCATCTCATACATATTCACATAATAGTGGAGGTGAACCAATCAGAATCCCCG ATCTAACCTGGGACCAACTCAAACAGTTTCATGCTTCACATTACCATCCAAGCAACTCCAGGTTCTATAC TTATGGTGATCTTCCCCTAGAGCGCCATCTAGAGTTGATTGAAGAGAAGGCATTATCCCACTTTGAACGT CTCCAGCCTCATACAGAAGTACCTAATGAAAGCAGATGGGCCAGTCCGCGTGAGCATACCATGTACTGCC CACCGGACCCTATGGCCCCTGATCCAAACAAACAGACTACCTTGGCAGCCAGCTATGTCATCAAAGATGT GACCGATGCAGAGGAGTTGGTGTTTGGTCAAATCCTTGGCTCTCTTCTGGTGGACGGTCCAACAGCACCC TTCTATCACTCTCTCATAGGAGCTGGTATTGGTTCTGATTATGCACCTTGTATTGGGTACAGCAGTCAAA CAAGAGACTCAACATTTAGTATTGGCCTTCGAGGATTAGCTGAGGAGGACGTGGACAGAGTCAAAAAGAT CATTGAAGACACCATAGCAAAAGTCATCAGGACTGGGTTTGAACCTGAGAGGATTGAAGCCATCCTTCAC AAGATTGAGCTCTCTAACAAACATCAATCCACTCAATTTGGACTTGGTGTAGCTGCTGCTTTAATGCCAA GTTGGAACCATGGCAATGACCCCTCAACCAACTTGAAGATCACTCAGCTTGTTGACAGCTTCAAAGCCAA GGTGGCCGCTGACCCCAACTACCTGCAGTCAAAGGTCAAAGAGTATTTCCAGGACAACCAGCACAAGCTT TGGCTTACCATGAAGCCACAGGAGGATTATGTGGAGGAACAGGAGAGAGAAGAGAAGGAGAAACTGGATG GAATGGTTGCCAAATTGACAGAGACTGACAAGATGGATATCTATGAAAGAGGATTGGAATTGGCTGAAGA GCAGAAGAGAGAGGAAGACATGACCTGCTTGCCGAGTTTAAAGGTCAGCGACATTGATGCCAAGGCCAAG AGGACTGCAGTGGAGACTAGACATATAGGTGGTGTTCACACTCAGTTCTGTGAGCAACCAACCAATGGGA TCACTTACTTCAGGGCCATGTTCACACCAGACAACATTCCAGATGACCTACAGATCTACCTGCCTCTGTT CTGCAATGTCATCACAAAGATGGGTGCGGGGGAGCTTGATTTCATAGAGTTTGCTCAGAAGGAAGAGCTA AAGACTGGCGGAATCTCAACTTCTAGACATATAGCACAATATCACAGTGATGTCATGCAATATGAACAGG GGATCGGTCTGTCTTCCTTCTGTTTGGACAGGAATTTACCAGACATGTTTGATCTACTTCTCAGAGTATT CACAAGCCCAAGGCTGAATGACATGGAGCGATTGGCTACCTTGGTACGGATGGAAGCAGCAGAATTAGCC AACTCTATTGTATACATGGGACATGCCTTTGCTATGAAACGAGCTGGAAGTAGTCTGTCACCCTCTGGCA GGCTTCATGAGATAGCAGGAGGAATGACCCAGGTGTCATTCCTAAAAGGACTTGCCGAGAAGGAGAACTT GGACCCAGTCTTGGCCCACCTTCAGACTATTGCCTCCTTGGTACTAAACAAGACCAACATGAGATGTGCA GTCAACTCCAGCCCAGAAGGCGTGGATCAAGCAGCCAATCAGCTGACAAGGTTTCTAGATAATCTACCAG GCTCACCCTTAGGAGACAGTCTACATTTAACACAGGCATCTGACTTCAGTCCATCTGAAGAGAGAATGCA CTACGAGCTTCCATTCCCTGTTAACTACATGAGCCATGCTGTATGTGGAGTGCCTTACTCACATCCAGAC TTCCCCAAGTTGAGGGTCCTTGCCCGTTTGATGTCTGCCAAATACCTGCATCGGGAAATCAGGGAGAAGG GAGGAGCATATGGAGGTGGAGCATCCATGGGCACCGAGGGCGCTTTCAAGTTTTACTCTTACAGGGATCC CAACACAGTGGAGACAATGTCAGCCTTTGAGTCATCGGTCCAGTGGGCCCTAGATGGCAAGTTTACTCAA CAAGATATAGATGAAGCCAAACTCTCTGTCTTCTCAGTGGTTGATAGTCCGCTCTCACCGGCCGAGAAGG GTGCCACTCTCTTCTCCACAGGGATTGACAATGATATGAAGCAGGAAACTAGAGATGCACTCTTCGCTGT GACTAAAGACGACCTCAGAGATGTAGCAGAAAGGTACTTGATGGATGGTAAGAGAACCCATGCCACTACT CTACTAGGACCAACCACCACCATGACCAGTCAGGGATGGAATATACTCAAGGAATGAACAATTCCAGGTT GGAATGGAAGCTTCTATATCTGAGGAGATGTCAAATTGATTAGATTTTCCACTTCGTCAAAATTCCAAAT AAGATCAAAAGGATTTTTTTTCTGCTGGAATGCATATTCCGTCTTGCCTTTATATGGAGATGTCGTTTTA ATAAATAATCCGCATTTCCAATCAAGAAGATGACAAGGAATATTGTATCTAAGAATTAAAGCTCTATGTC TTGCCTTTCATATGGAGATGTCAAATTGATTAGACTTCCACATTTCCAATCGAGAAGATGAAATAAGAAT ATTCAAGACTGGCATGAAGACTTGCCTTTCATTTGAAGGTGACATATTGATCACCCTGATGTACCTTCAA AGTCTATCCCTTATGTCTTCGGACTGTGATGTGAGAGGAAAGTGCAATGTCTTTATTCTCAGTTGGGATG AAATGCTAGAAATATTCAATGTTTATATACACCTCATCTGAGGTGACTATAAACAAGAGATTTGTGTTTA TTAGAGATTTAATACCGGTAAGGAAGAAAGAGATTATTCAAACATAAACATGGACAAAATTTGCAATAGT CATGATTTTTATTTGTGCAAATGAACTATGATTACGGAGATGAAATTGAAAAGAGGTCTTTTAGATTTAT AAAGACAGACTTACATGTAAAGCCGTGTACGTGTACATCTGCTCCTATTACAATCGGTGAACCACAATGA ATTCAAATGAAGGAAAATCACTATGCCCATCCCCTGAAATCGAGACTTCTGACTAATTAAATAACAAATA TAACTTGTTCTTAGTACTGCTTATATCTTCCATCAATATAAAGTATGATAGACTTTTTAACCATTATTAC TGACTATGCATTTATGTGAAACAAAACTTCTTACTGTTACATATAAGGCATGTACTGGATGATATGCCAA TAGTCAACATATCATTATACAGCTCTTTTCAACATTTTATTATGCCTCTGTTACGAAGTATCCGGAGGCA TTATATTTTCGGGTTGTCCGTCCGTCCGTACGTCCCGTTCTCATGATCGCGTTATCTCAAGAACCGACTG ATGGATTCCTGCCTAACTTAGTCATATGTGTATCCTGCAGAGCCAATGAATTGATTAGATTTTGGGGTCA CAAGGTCATAGGTCAAAGGTCACAGGCCTCATTATGTATGCAAAAAAAGCTCGTGATCACATTATCATTA GAACAGATAGACAGATTACCATGAAAGTCAGGAAAAGTATGTATCTTGCTGAGGCAATGAACTGAATAGA TTTTGGGGTCATGAGGTCAAGTTTAAAGGTCATGGGGCTCATTATGTATGCAAAAATAGCTTGTGATCAC ATTATCATTAGAACCGATGGATGGATTACCATCAAACTCAAGATATGTATGTTTCTTGCAGAGCCAATGA ACTGAGTAGATGTTGGGGTCATGAGGTCAAAGATCAAAGGGTTTATATACAGTATATCAGAAATAGCTTG TAATCACAATATTCCAATGGATTACAATTGAACTTGAATTTTAAAAATTGCTTCTGTTTTGGTTTGTAAA ATTGCTCTATGACGGAGGCATCATTTTCGACTGCGTGCAGTCGAAGTTCCATCTCGTTTATATCAAGATT AATGCACGAAAATGTACAAGTTTATGCTTGCAAGAACTATATACATACATGAATTTGTGTGAGCATGTTG TCAGTCATTTTCTGCTCAAATCAGGTATGTTCCTGAACTAGAAATCTCAAGTTATTATATGAATTTGTCT TTTTATACACAACACCTATTGTCATATTAAATATGATACATGTATAAATCATATACTGTGTATGATGTGA TTTTATATGTTAAGCGTTAATGAATAGAGGGTCACAAGATATACATGATCTTAGTTTATTTCCTTCTGCA TAGTAAACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds