Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041624979.1 PREDICTED: Lytechinus variegatus axonemal dynein light chain domain-containing protein 1-like (LOC121428387), transcript variant X2, mRNA TAGGTGCGGCGCGGGTTAGAAAACTAAGTGGAGTTAACAATGTTTACAAACGCTGTTTCGTTGACAACAA GCCGCTGCGAAGACGAAGTCGATTAAAGCAAGACAGATATGACGGCAGTGGCAGTTGCCCCTGATGTTGG GGATTTTCCCAAAGTTCCTGACCCCACCCCTATGCCTGCAGACACAGCATCAAATAGTCCAGCACTGAGA AAAGAAAAGGGTGTCGTCTCCAAACAAGAAAATGGAGGAAGTCCTCTCCCAGACTTGCGATCCAGTGATA ATTATGTCGACAGAAGCAAACCATTGCCAACCTCCCTGCAGAGTGATTTTATTCCAGAAGACATCTTGAA TGCACTTACACAACTCCCTAAACCAGTCAGCAAAGATAAGCTTAAAGCTCCCGGAAAGGCCAAATCCAGT TTTCCTACAGATCAAAAGGCCATTAAGAGTGGACCACCTGCCAACGTATGGAACTTTCCAAGCAGGAGAA GGAAATTCCAACATTTGACAGATCAACCTGTTTCTGTAACGGGAGCAGGAAGAGACATATCTTTCCTCTA CGATGTTGCTCTTAACGGATCCAATGACCCGAAGCCGTTAGCAAATGACCCAAGTGGAAAACGTGCTATT GAGAAACAGTCGCAGAGTCATGGCAATAAGGGTATGGCTGTTCCTAACACACTGGTCCCATCTGAATATC ATGTTGTTAAAGCAAAGGGTGTCCAGCATTTAGAATTCCAAGAAGAGAAATTTAGTACACACCTGAAGAA TGAGGATGAGGCTCCAGTTGTGTTTCCATCACTTAAACCAACAAGCCGATATGAAGTGATGCAGCTGAAG GAATCTCTTCAAGCCATGCTGAACAAGGCTGGAGTCAACGATGAGGGAGTAGAGGTCAAAGGTCCCACAC AGATGCATAACCTCCTAGAACTGGTGAAAAAGGAGCAGAATATCTACAACATCATTTTTCATGAGCTCAT CAGACAGGTGAGTGTGGAATGTATTGAGAGAGGTGAACTATTATCATCAGTCAGAGAACTCTACAATAAA CTCCTTGATAAAGTTCCTCGCCAGATCAAAAGTTTGCACCAGGAAGTAATGGCCCAGAGAGCTCTTGACA GAAGGCTAACAGAAGAACTGTTCAGATTCAAGTCAACTATCTCAGATCTCACAAATGAGCTATCTGATGT CAGGGAGCATGACAAGGTTGTAACTGGACAGGCCCAGCAAGCACAAGAACAGCTTGCAGCAGCTCTTGCT GAATCAGAGAAAAGTGCCAGTCTGCTTGGAGAGTATCATGAGCTCTATGAGCTTCAGAGGAGGAGACTTG AGAAGCAGGTGTTTCATCTAACCTCTGAGAGAGATCTATGGAGTAACGCTGCATACTCTCTAGCGTTGAA GGTCACTGAAGCCAACTCCTTGACCACTGCAAGAAGATTGCATGTCTGTGAGAAGGCCTGGTCAAAACTG ACCCATCACTTTACGATAGTACTGAGTGACAGAGACACAGTTCAACTCTCACAGCTACAGGTTCTGGTAG AGCGCCATCGCTTGTTGATGATAGATTTCAGCAAAGAACTCAAACAAGAAGATATCACATCTAGGGAGCG GCTTGCATTGATCCGATCAGGGATCAAGAAATGGATGGATCTCTTTTACGGTACAGTTGTCGGGCAACTT GAAGCCAGCATCGTGGAGTCAGACTTTATGTCTGGGCGTCAATCATCCAGAGCGAGTGATAAGATTAACA CCATCCTTCAAGCTCCTAGCAGAGAGATGATCCAAGCTTTATATGAGGACATCCGTCTATGGGAAGAGAA CCTGAACAAGGAAGTAGAGAAGTTTGGTGGAGATATTCTCCTGGGACACGAGGAGAGTCTCTATGAAATC AAGAAGCAGACCGATCAATGGACAGAGACGGCCCTCCAGATCTTCAGTCGGCACATGCCTACCGATGGTT CTGAGTACCCTGACCATGACAAGCTGGTGGAAATGAACATGCGCTTGAAAGAGGTGTGTGAGGCTATGTG TAAGCAGCTTCACATAAGAGTGAATGGAGAAAATGGCACTGCTAAAGGATTCATTCAAATCACCAATGCC CTTGAGAGTTGGGACACCAAACTGAACAGTATCCTGAATGGGGGTGCTATGCCGATGGAAGCAGAATGGC TGCGGCTTTATGAACTCTTCTCTGATTGGATAACTACCATCAATGATGTCGAGAAAAGTATTGGCTCCGA GCAGTCGGAGGATGACAAGGCTGAAGGCAAACCTTTCAATCCGATGATACAGGAGGATGTATTTAGACTT GCTCAGAAGTGGGTGGCAGCAACGATCAATGGAATTGATAGTCAGGATTCTAAACTCCTTGAACAGGTGT CTGTCCTGCATGCGGACATGGTTCACTGGATGATCCAGGTCTTACTACGTCTAGCTCCCAACCCTCCAGA GAGTCCACAGGAAGTGATCGATGCCTGTATGGCCAGCGCTTGGAGTCTTACTAAGATACAGGAGAAGGCT GTGGGGCTATTCGATCGAATTACAGCATTCTCAAACTACATTTCAAGCTGTTGTTCGAGCATAGTATCGA CCGAGATGCAGAAGAAGATTGATGACGGGGAACCGAATGCGGACCAGGAATACCGTGACCTGAAGAAGAT TAAATCTGAATGTGGCGAATGGATCCACATGGCAACCATCTTGATGGATGAGCTTCGAAGCGTTGAGATG GCTCGGCTTGGGGGCGAGGACCTACCGACTCCACTCCATGTCCCTGATGGGATGCAGGGCTCTGATCCTA GGGAGGATAGCCAGACAGCACCCTTTACTCCAGGCATGCCAGACAGAGGAGAGCTTGTTGGAACAGAAAC CCCCACGACAATGGTAGACAGGCCGCCTGGCACAGCTGACACCCAACGTCTGGATACACCTAAATCAGGT GCCCCATCCACGGCCCCTGTAGCTGCCCCATTGGCTGCCCCTGCCCCTAGACCAGCGACAGGAAACCAGC TCATGACTCCATCAACAGCCAATAGCCAGCGTTCTGTCTTGCCCGGCTCCACCCCAGGTGCAGATGACCT TGTTAATATGAATGAGATGCAAGTATTGGGATTTGATCAGAACGTCTGGACTCAGAGTCTAGAGGAGAAC AAAGACCAACCCCCTCAGTCGGCCCCTAAAGAAGCAACCCCTGCCAAGCTGTTGGATTCTGCCTCTAAGA CGCCAGATACATCTAAAGCTTATGAGGCGCTGACAGCCGTCAAGAGCCTTCAACAACAGCTACTTGCAAC TGAAGAGAGAGCGCAGACAGCAGAAGAGCGAGTCCAAGAACTTGAAGAACAGCTTAAGACAATCCAGGAA CATGCGCGTGCCCTGGAGCGAAAGAGCGCCACTCCGGCCGTTCCAATTGCGACTCCCGGCCCTGTGGTAG GGGCATCGACCGAGCCCCCTAAGACGGCCCCAGAGGCGCCCATCACCGAGGAAGCAACCACCACTGCCCC AGGTTCCACCATGATGTCCCCATCGGAAACCCCGCTGACTACCTTCACCAAGGATACCATGGGGGCACAG TCAACACCCCCTATGAGGCCTGGGGTAGCGGGCGTTGGCCCCCTCCCCACCCCTACAATCACCCCATCAC CCCCACCAACTCCTGGGAGGAAGACGTCGAGCTCAAACGCCTCTTTGTCTCGCCCGACGTCCAGAACATC CATTGGTTCAAGAGGCTCTGCTAAGTCCAGGAAAAAGTGAAGAAATCTATCATCTGATAATCGAGATAAA TCTTCAAAGCAAATAAAGGTTATGTGACTATCCTAGAGTCAAGGTCTTCTGATTCATGAAGCAGGGTTGT ATATTCACATCTTTTGCTCATAGAATCCCAGATACTGTGTAAAATTTTATTTTCACTTAATCTGATAAAT AGGTTATTTTTTTCCTCAAGAATTGGGAATGGCTCTTTGATCTTGGACTATTTCACCATTCAACTTTCAC ACTGCAGCATAGATTGTTACTAATGTGTGTAGGTCTTTATTATTTTCCAGAATTTTTTACAAGAAAGTTC TCCAGAAAGAAGGTAATCATGTAGATTTATCACACCCCATACATATCTATTTGATGTATGTAAAGCTAAA GCCTGAACAAAAAAATAGAGAAATACAAATAAAAATTTTCCATTTTCTATCTTTCAGAGTTGAATATTGT GTGAATTGTATTGCAAAATTTTGACTGAAATAATTTGTAACATGTGATATGCTATGCCTATATTACACTT GGCATGCAAAGTAGTATCTACAAATATATTGTATTACCATTGTTTGTATAGACACTGTATGTAAGTGAAT ACTTGTCATTTAAATGCCATTATCATGATTAAACAAAAACTAGATAGATGGCACTATATAAATGCCTGTT ATTATTAGTGTCATATTATTATTACTGTCAGGCAGTTAACCATGTTTGGCTCTTGAGAATATCTTGTTTT ATATTCATATGCAGTAAACATTCCACTCTGTCTTATGGCTAAATCTACCGATCTGTATTGTAAAATAACA GAACTAGGTATCATATTACCAATATTTGAATGAAGTTTTTTGGTGATCAGCAGATCCTATTTTGGGGTTT GTAAATGTCTGAATCTATAAGCATAATTAACATAATTCTTGTGAAAATTTTAACTAGTGTACAGTAAAGG TTAAACTATCTAGCTTTGAGTAGACTTTCTGGCACAGAGAATTTATTGCAAAAGATGTTGAAGAGTAATT ACATCCCCCCCTCTTCAACTTTTGTTTTTAAATTCAAATCATATTCTTTAAGAATAAAATTTCAAGCAGT TTATGAGACATAGAGTTTTTAATTTGAAAATGGTTGAAGGTTCTCCTATGCAATGTTATTCTCTATGCAA ATATGTTTATTGTGCCTAACGTGTATAGAGATGCATGATGTCATGAACCATGTACATATGTACTCAAATC TTTTGACTTATACATACATTGTATATAGTTGTCCAATTATTCAAATATTAGAGATACCATTTCAATGAAT TCAGTCTGGTGGCATACATACTGTATGTTTGAAAATGTCACTAATAGAGTAACATTCCATGATAATTTGT TCATGTATAAATACTATACTAGGTACACTATCGAACAACATATACATGTATATATTTTTCTCTTAATTCA TATTGCAATAGGAGATTAAGTTCTTAATTATATGCCTTAATTGCTGATATACACAGATAACATTTTGTAG AATAATTTTGTGCCTATTGCATTCATGTATTTCTATGATTATTTATATTTCAATCTCTTTCTTCCTGTAA TATATACCAATTATTCTTCCTCTTTATTTGTATAAATACAAAATGTGTCTGTCCTCTGATTGCAGCTGTA AATTCACTAAGCCTTGAGCAGTAATCTGACTTTGTAGGATATAAACGGTATAAACTGCATATCATAAACA TGATCAACTGCCTATACTGAACATATATTCAGGGATGTCAGTTTTCAGGCAAAGGCCTGAAATCAGGCTC TGGCATTTTATTTTCAGGCCATAGTTTTAGCATTTTTGTGTACAAAATATTGTCTTCTAGGTAATTTTCA GGCCCTCTGATCAATTCCAACTGGCATCCCTATATATTAAAGATTGCTGAAAGAGCAAAAAGCAAATGAA AGTTTGATGATTTGTGGCTCTATGTTGATATTCCACATATGTTATATTTACTATATTTTGAATATTTTGT GCAACATATAGGATAGTATATTGTAAATATATCTACCTCTATCTATCTTGTAATCTGTATGTATTTCTAA TTGTATTTTCTTATATTCTGGAAGCACTTTGCTGTACTAGTAACATGCAGTAGGAGCTAGAGTATATGAA TGCTTCTAGCATGTACTGTAGTGTAGAGATATTGTGAAACATACGAGACAGTGAAAAAAATGTCCATGTC ATGGATATCCAGATTTTGAAAATTACAAAAGAATATTCTTAAGCCTCGATGTTCATTTCGGAATTATGAT AAGAACTGATTGAAAGAAGAGAACATAACATATATATTACTCCTGTGAAAACTATTAATGAGAGTATGAA GGAGTAAAATATTTGAGATAATTTTGATGCAGTTATACAGAACAAATTTATAGATTGTGTGTCATAGTGA CACTTTCAAACAAAACGAAGGGTGTGTTTTTGCTTCCACTTTTCAGAATCAGCGTTTTCATACGTGATCA GTCCAAAACACGGTTGTGTCCATGCTTACTTTTATTTAAACGACGTTTCAGAACGCCGATCATAAACTTA TGAAAAGATGCGTTTCTAAACGTTGTTTGACCAGAATCAGGGATTCTGGGGAAGTATAAACAGAACCACG ATCGTGAACGTGTTTAGTCACTTGATACATATATGTATACTTATATATTTCATTATGTCTTACTATTATC CTCACCATGATAGAAATTTTACGGCTATGTCAAGTAGCTCCATGTTATGAAAAGATCAGAAATTATTCAA TAATAGTCGACCATAACAACACTCGAAAAAAGAACTTTCCAAAGGAGGGCGCGCCCAATTTGACCTCACT TTCCTGCTCAATGAAAATTACGATGCAAAGCAAGCTGCAGATTGCAATTTCGCCTCTGAAAAATTAAGCA TAAACAGCATCTCCAGAACCATGTTTGCGATCAGCATTCTGTAACGTTTGAAAACGCTGATCCTGTCTCC GCAATGGAAGCATTAACATACCCTAAGTATTTACTGGTCTGGTGCAGACTTACAATGTACAAGCTGGTAT ATAGGTACTGTTTTGTACAGGTTCCATGATGAGCTACTTTCAATCCTTGATATCAGTTGTATAACTTTTG CAACATCTTTTACCAGTTGACTTGTGAATATTTCATGTATATATGTGTATAGATTACTGATTGCCATGTC CGTCCTAGCATTATTTCTATTTTCCATATTTACCCGTTTTACAGAGATCAACTATATGTATATTATGTAT TTATTTGCTTCTATTCTTGAAGAATAAAAAGAAGTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds