Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038189461.1 PREDICTED: Patiria miniata axonemal dynein light chain domain-containing protein 1-like (LOC119719973), transcript variant X7, mRNA TATTCTGAGAGACCGTAAACGTTGACCTTCCTTGACAACAAGAAGTGAGGTGAATCGTCACAAAAATCGC TCCGAATTGAATGAAAATAACAGCTGATTTCTCTCAAATGTAGACCCAGGTATGAAGCAACCCCCGAGCA GACCAGCCTATAAATAAGACTCGTTGACATTAAGATGACTACGGCCGTCACCCCGATGCCGGAGATGGTC AACGTGGGCGGGAGAGAACCCAGCCCCCCACTGGAGCCCAGAATGGAAGGCAGGGACAGCCCCACCCCAA GGAAGACGCGAGTGCTTGTCGCCAAAAATGAAGACCAAGGCGTTGCGGCCCTACCAGAACTCCGATCCAG CGACAAAGACATCGACAAAACCAAACCCTTGCCGACCTCACTCCAGAGCGAATTCATCCCAGAAGAGATA CTGAACGCCCTGACCAACATCCCCGTCCCGGGGGTGAAGGAAAAGTTAAAACAGAAGGGTGTGCAGAAAG CCAAGGCCAAGGTTCCCAAAGGCGGGGCGCCGGCTGCCAACATGTGGAACTTCCCGAATCGTCGGCGACG CTTCCAGCATCTGACAGATCAACCCCTCTCCATGACCGGTGCTGGAAAGGATATTTCGTTCTTGTACGAC GTCGCTTTCACCGACAAAGCTCCAGACAAGGTGAACCCGGCGCAGGATCCGAGTTCCGTCAGGGCCCTGT CCAAACAAGCCGAGCGAGAGAAGGGGATGAGTGTTCCAGATTCTCTGATTCCATCTGAATATCATGTGGT CAAAGCGAAAGGAGTGCAGCACCTAGAGTTTCAAGAAGATAAATATACCACCAAGCTCATGGATGCAGAG CAGCAGCAAGTGGCTTTCCCGTCACTGAAGCCGGCCAGTCGCTACGAGGTCTTGCAGCTTATGGAGACCA TGGGCGTCATGCTAGACAAAGCAGGCATTGACGACGAAGAGATCGAGATCAAAGGCCCAACACAGATGCA CAATCTTCTGGAGTTAATCAAGAAGGAACAGAATATCTACAATCTCATCTTCCATGAGCTGATTCGACAG GTGAGCGTTGAGTGTGCCGAGAGGGGAGAATTACTAGCAAACCTCCGACAGCGATACAGCAAACTGCTGG ATAAAGTACCCAGACAAGTCAAAAGCTTGCATCAGGAGGTGATGGCCCAGAGAGCCCTGGACAGAAGGTT GACCGAGGAGCTGTTCCGTTTCAAGAATTCCATATCGCAGCTCACAAATGAGTTATCCGACGTGCGAGAA CACGATAAAGTTGTAACCTCCCAGGCCCAACAAGCGCAACAAGAGCTTGCGGCAGCATTGGCAGAGTCGG AAAAGAATGCAGGGTTGTTGGCCGAGTACCACGAGTTGTACGAGTTGCAGCGAGCGCGGCTCGAGTCTCA AGTCATTGCGCTGTCCAGAGAGAAGGAATTATGGAGTGGCGCGGCCTACAACTTGGCTCTCAAGGTCACG GAGGCCAACTCGCTGGCCACGGCTCGCCGCTTGCACGTCAGCGAGCGGCTCTGGTCCAAACTGGCCAATC ACTTCGCGATCGTCCTGAGCGACCGCGACACTGAGGAGCTGTCGCAGCTCCAGGGCTACATCGCCAGCCA CCGGCAGCTCACGATCAAGTTTGCGGAGGAATTGAAAGCGGGCGATGTGAAATCTCACAGCCGGCTGCAG ACGATCGGCAAAGGAATCGAAAAATGGATGCAAGAGTTTGACCAGTTTGTGGTGGCGAGTCACGATAACA TCCAGACGGTCGTTCAGGCACCGCCGATGGAGATGATCCAGAAACTGTACGACGACATCCGATCCTGGGA GGAGCAACTGAATAAAGAAGTTGAGAAATACGGCGGCGACATCTTGCTCGGCTTTGAGGAGAGCATGTAC ACCATCAAGAAGCAGGTGGAGATGTGGACCGAGGTGGCCTTACACATCTTCAACCGTCACCGGCCTGAGG ACGGATCGGACTACCCAGAGCACGAACGGCTGATGAACATGAACAAGTTGACAAAGGAGGTTAAACAGGA ATGCGACACGCTGCACAAACAGTATCAAATACGAGTCAACGGGGAGAATGGCTCGGCAAAAGGTTTCATC CAAATCGCAAACGCCTTGGAGAGCTGGGACACGAAACTGAACTCCATCTTGAATGGGGGCGCTATGCCTA TTGATAGCGAGTGGATGCGATTGTACGAGCTCTTCAGTGATTGGCTAGTCACAATCGACGAGACGGCCGA GTGCATCGGCAGCACGCAGAAGGAAGACGCGAAGGCAGAGGGAAAACCGCACCAACCGCTGTCCATGGAT GATGTTTTCCGAAGCACGCAGAAATGGCTGGCCAGTACCACTAATGGAATAGACAGTGAAGACTCCAAAC TAGTCGAACAGGTTGCAGTACTGCACGCCGAGATGGTCCATTGGATCATTCAGGTGCTGCTGCGTCTGGC ACCCAACCAACCCAATAGCCCGCCAGAGGCGGTGGAGAGTAGTATGGCGACCACGGACACCATCCCTCAG ATTCAGGAAAAAGCGGCCGTCATGTTTGACAAGCTGACCAGATTCTCCAATTACATCACTGGATGCTGTG CCAATATCGTGGCAGAGGAAGTGCAGAAGAGGCAGGACGAGGGAGCCGAGGATGCAGATCACGAACTACG CGATCTTAAAAAACTTAAGAGCGAGTGTGCCGAGTGGATCCACACAGCGACGATACTCATTGAGGATCTC AAGTGCCTCGATCCGAACTACGTTCCGGTGGTGTCCGCAACTCCGGGGACAGGAGACGACAAATCAGAAA GCGCGGCCACACCGGTGCCGCAAACACCACAAGCTATCGACGGGGCCGAGCTTGTTGGGTCAGACGGCAC CCCTAGCCAGACACCAGCACCAACCATTTTGTCAGACACCCAGAAAGAAGGTAGCAGCGCATCGCTGAAG GGGACACCAGTTTCCACAGACAAAGAGCTCTCCCTGCCCGCAACCCCGGCAAGCAAAGACGAATCACCGG CAGGCAAAGACGGATCACCGGCAGGCAAGAGTGGATCACCGGCAGGCAAGGACGAGATCAATATGAGCGA GATGGAAGCAATAGGCGACGACGACAATGTACGGACGATGTCACTTGAGGAGCCCATACAACCGCCCAAA AAGGTACAGCCACGCGTCGCTGCATTGCAAGCGGAGGCCGGAACGCGAACGCCAACCCCGGATCCAGAGA AGGCCTACGAAGCACTGGTGGCTGTCAAGTCACTACAAGCAGAGTTGCTAACAACTGAGGAACGTGCTCA GAAGGCTGAAGACAAGGTGTCCGAGCTGGAGCTGGAACTCAAAGAGACGCAAGAGAAGCTCCGAGCGTTG GAGAGAAAGAGCGCCACCCCGCATCTCCCGGAGAAAGACCACGACGCGGCCAGCATTGCGAGTAAAGACA GAGGGGTTGCCGACACCCCAACCCAGCCAGGGAACTCCACCCCGGCTCCTGCCACGCCCAGCACCCCTCA GGCCACGCCCCCTGCTGCCGCCCAGGACACACCCCCGTCCACTCCCGGGCGAAGGGCGCCCTCACAGCCT TCGCAGCCGTCGCGGCCTCCTTCCCAGGGATCACTCAGGTCTGGATTGGGCTCACGAGGCTCGTCCAGGT CAAAGAAGAGCAAGTGATTTTTGGAGTCGATCCTTAGCAACCGAAATCACCTTTATGATCATTTGTATGA CACATACAGATTGATATTAACCCTCTTTAATAATACATATTCATATTTATGCTTTAATTGGTATTTCATA GTGGAATCTGGAACCAGAATTAGAAGCCGTTAATCGCTGCGATGATACCACGCTCACATGCTTGCTGCAT GCGTATTAAAGACGCATGCACATTTTGGTAACACTATCAAGGAGCTACCACCTGAGCGCGACTCAATCGA ACCTGGTGCCATCTCAGAAAATGCCTGTCGCTGGATTAGTCTTTTAATCAGCTCACGTCACTGCATTTAT TTTAAATTCCATTAATTTGTGTACTCGAGGAGTTCAATTTTGTCATCATTTCACATTGTCTCAGATCACA AGACTGGAAAGAAGACTACATTTAAACACAAACAACAATTTGATTTATACTTTTTATTGGTACATGATTA TTCATTACATTGAATTGAAGACACTTGTTAAATCTTCAGATTTTGATTTCGTTTTGCTTCAAAATCACTA CAGTTTATGTGCCTTAACAGTCCAACCAGAGGTGTTAATTTTTGGATCTTAGCAAACTGTAAATTCCATG TGTTTTTCCCACTCTAAGTTGTACATATTGGGAAATTATCTTTGAATGCTATTTAATGAGTAATTGTAAA GAAATTTGGAGTTAGTTTGAATTTTTTTTTGACAAGTGTACATAGCGTGATTTGGAAATTCACATTCCGT CCAATATTCCTAGCTTAAACGTCAAGTGAATTCTTTGTAAAGTTTGCCTTTTGATATTAAAATCTCTGTC CATTGTCGAAAGTTTACAAGTGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
