Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030997495.1 PREDICTED: Strongylocentrotus purpuratus axonemal dynein light chain domain-containing protein 1 (LOC578169), transcript variant X2, mRNA TGTTGACTCACATTGTTTCGTTGACAACAAGCCGCATTGAAATAAAATATTGAATAAAGCAAGGCAGATA TGACAGCGGTGGCAGTTGCCCCAGATGTTGGGAATTTCCCCAAGCCTCCTGACCCCACCCCCATGCCTTC TGAATCAGGACCCAACAGTCCAGTGCTGAGGAAAGAAAAAGGTGTCATCTCCAAACTGGAAAATGAAGGT AGTCCACTTCCAGAGTTGCGATCCAGTGATTATTACATCGATAAGACCAAACCATTGCCAACATCCCTGC AGAGTGACTTCATCCCAGAAGACATCTTGAGTGCACTCACACAACTCCCCAAACCAGTCGGCAAGGACAA GCTCAAAGCTCCAGGAAAGGCAAAGTCAACTTTTCCTACAGATCAGAAGGCAATCAAGAGTGGACCACCA GCCAACGTATGGAATTTCCCGAGCAGAAGGCGGAAATTCCAACATTTAACAGATCAGCCTGTTTCTGTTA CTGGAGCAGGAAGAGACATATCTTTCCTCTACGATGTTGCAATGAACGGTTCCAATGATCCACGGGCATT AACAAGTGACCCAAGCGCAAAACGTGGCATTGAAAAGCATTCACAAAGCTATAAGGCTATGACTGTTCCT AATACACTGGTTCCTTCAGAGTATCATGTGGTCAAAGCAAAGGGTGTCCAACATCTAGAATTCCAAGAAG AGAAATTCAACACACAATTGAAGAATGAAGATGATGCCCCTGTCGTTTTTCCGTCACTTAAACCCTCAAG TCGCTATGAAGTGATGCAGCTCAAGGAATCCCTTCAGGCCATGCTGAATAAAGCAGGGGTCAATGATGAG GGGGCAGAGGTCAAAGGTCCCACACAGATGCATAACCTTCTAGAGCTGGTAAAAAAGGAGCAGAACATTT ACAACATCATTTTCCACGAGCTCATCAGACAGGTGAGCGTGGAATGTATTGAGAGGGGAGAACTGTTATC TTCAGTCAGAGAGCTATACAACAAACTCCTAGACAAGGTGCCTAGGCAAATCAAAAGTCTGCACCAGGAA GTAATGGCCCAGAGAGCTCTTGATCGAAGGTTAACAGAAGAACTCTTCAGATTCAAGTCGACCATCTCAG ATCTCACCAATGAGCTATCTGATGTGAGGGAACATGACAAGGTTGTGACTGGACAGGCCCAGCAAGCCCA AGAACAGCTAGCTGCAGCTCTTGCCGAATCAGAGAAAAGTGCCAGTCTACTTGGAGAGTATCATGAGCTT TATGAGCTTCAGAGACGGAGACTTGAGAAGCAGGTTTTTCATCTAACCTCCGAGAGAGATCTATGGAGTA ATGCTGCATACTCCCTAGCATTAAAGGTCACAGAGGCTAACTCCCTGACCACTGCAAGACGTCTGCACAT CTGTGAGAAGGCATGGTCCAAACTGACCCATCATTTTACAATCGTTCTGAGTGACCGAGACACTGTCCAG CTCTCACAATTGCAGGTTCTGGTAGAGCGCCATCGCTTGTTGATGATAGACTTCAGCAAAGAACTCAAAA TAGATGACGTCACCTCCAAGGAGAGGCTTGCATTGATACGTTCTGGCATCAAGAAATGGATGGATCTGTT CTATGGTTCAGTTGTTTATACAGTGGAAGAGTCTAAAAAGATCAGGTTTTGTCTTAGCGGTCAGCTTGAA GCCAGTATTGTGGAGTCAGACTTTATGTCTGGGCGTCAGTCATCCAGAGCCAGTGATAAGATCAACACCA TCCTGCATGCTCCTGGCAAAGAGATGATACAAGCACTTTATGAGGACATCCGTCTATGGGAAGAGAATTT GAACAAGGAAGTGGAGAGGTTTGGTGGGGACATTCTCCTGGGTCACGAGGAGAGCCTCTATGACATTAAG AAACAGACCGATCAGTGGACGGAGACGGCCATCCAGATCTTCAGCCGGCACATGCCCACTGATGGTTCCG AGTATCCTGACCATGAAAAGCTGGTGGAAATGAACTTGGTTTGTGAAGCTATGTGTAAGCAGTTCCACAC CAGAGTGAATGGAGAAAATGGCACTGCCAAGGGGTTCATCCAGATCACCAATGCTCTAGAGAGCTGGGAC ACCAAACTGAACAGCATCCTCAATGGGGGCGCTATGCCCATGGAAGCAGAGTGGCTTCGTCTTTATGAGC TCTTCTCTGATTGGATAAGAACTATCAACGAGGTCGAGCAGAACATCGGCTCAGAACAGTCCGAGGATGA CAAGGCAGAAGGGAAACCTTTCAACCCCATGATCCAGGAAGAGGTGTTCAGACTAGCTCAGAAATGGGTC GCTACCACCATCAATGGTATCGATAGCCAGGATTCTAAACTCATGGAACAGGTCTCGGTCCTACATGCAG ACATGGTCCACTGGATGATCCAGGTCCTGCTTCGTCTGGCCCCTAACCCTCCAGAGAGCCCTCAGGAGGT GATTGATGCCTGCATGGCCAGTGCGTGGAGTCTCACCAAGATACAGGAGAAGGTTGTGGGTCTCTTTGAT CGCATCACGGCCTTCTCAAATTATATTACAAGCTGCTGTTCAAGCATCGTTTCGGCCGAGATGCAGCAGA AGATCGACAACGGTGAACAGAACGCTGACCAGGAGTCCCGAGACCTCAGGAAGATCAGGTCCGAGTGCAG CGAGTGGATCCACATGGCAACCATCCTAATGGACGAGGTCCGGAGCGTTGAGATGGCTCGGCTCGGTGGC GAGGAGCTGCCGACGCCCCTTCATGTACCGGAAGGTGTGCAGGGCGGGGACCCAAGGATGGATAGCCAGG GGGCCTTCACTCCTGGCATGCCAGACAGAGGAGAGCTTGTAGGAACCGAGACCCCCATCACAATGTCAGA CCGGCCCCCTGGCACCGCAGACACCCTGACCACCCAACGTCTTGAGACCCCTAAATCAGCCCCACTAGCT GCCCCATTGGCACCCCCTGTAGGAGCAGCTCGACCAACCACTGGCAATCAGAAGACTCCTTCAACAGCCA ATAGTCAGCGTTCCGTCTTGCCAGGTTCTACTCCAGGTGCAGACGACCTAACTAACATGAGTGAGATGCA AGTGTTGGGATATGATCAGAATGTCTGGACCCAAAGCCTAGATGAATTCAAGGACCAACCCTCTCAGTCG GCCCCTAAAGAGGCGACTTCTGCCAAGGTTTTGGGCGCTGCCTCCAAGACCCCAGACACATCTAAGGCTT ACGAGGCTCTCACAGCTGTCAAGAGCCTTCAACAACAGCTAGTTACAACTGAGGAGAGAGCACAAACAGC AGAAGAGAAGGTCCAGGAGCTTGAGGAGGAGTTGAAGACACTCCAGGAACGGATGCGTGTCGTTGAACGT AAGAGCGCCACCCCAGCCATCCTCAGCGTAACCCCTGGCCCGGTGTTGGGGGCGTCGACCGAGCCCCCCA AGACAGCCCCTGAGGCACCCATCACTGAAGAAGCCAGCACAACCGCTCCAGGCTCGGCCATGATGTCCCC TGCAGAGACCCCCTTCACCTCCTTCACCAAGGACACCATGGGGGAGCAGTCAACACCCCTGATGAGGCCT GGAGTAGCGGGCGTCGGCCCCCTGCCTACCCCCACCATTACTCCTTCGCCCCCGCCCACGCCTGGAAGGA AGACCAGCGCCTCACCGTCTCGTCCGACTTCCAGGGCATCAGTCAGTTCACGAGGGTCAGCAAAATCCAG AAAGAAATGAACAAAATGCATATCTGATGACAGAGCTAAATTATGCACTGAAACAATGAGTTATGTGAAA CTTCTTTAGTCATGGACTTGTAAGGAATAGATGGTCATTATGTTGGAGATATATATATATTTATACTGAT CCATGAAACTGGATTGTATGTTAAACATCCTTTACTCTTAGAACTACATATATATTGTAAAATTCACTTA GGAATTAATTTTCATTATGTTAAAAAACGAGAGCAGATCCATGAATAGTTACAGACCAAGATTTGTTGCA CATCATAGAATAGTCTTGTCTTAGGATCGGCTATGTAAAGTGACAACTATTTCATTTTAAACAGTTTTTT AACTGCGAGAACTAATTGTTACTAATTTTGTTCTTTATTGTGCAGTAATGTGATCACATAGATATTGATG TATTATATACACCATAGATAACCATGCATTAAGTTTGCGTATTTAAATCTGAACAAATGTTGTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
