Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038211903.1 PREDICTED: Patiria miniata ETS domain-containing protein Elk-3-like (LOC119737496), transcript variant X3, mRNA CATCGTGGGGGTGTCATTATCGGGTCAAGGACCACCTATGGGTGCCATATTTCGGTTTCGACTGGTGCCC TTGCACTCTATATGCATGACATGGCATTGTTGTCGTTGTGTGTGAGCACGGTGAGAGCCAGTGATTCTGT GACGACGTTTCTTGGTATTCAGGCTAACTGTTCACTGGGTATAAATAATCGTACATGTACGTTTACATGT TTGAAGTACATGTACTTTTTGTGTACAGCCTGTATTATGTGAACTATGGAATGCATTGTTTGGTCTGCCC AAAAGGACCGCACTACACGCAGTGAGTCAGAATGAAACAGCATTTTAATGTCTCCGGGGGAAATCGTCTG CTTTGAAATTTGCCTCAGAAGAGTTTTTGCAACAACTATTGTCAAAGACGATTCGTCATTCTCACGAGTG TGATCCAACTAAGAAATTATTGCACAATTTGCTACAAGATAAGTTCCTCGACGGTGCAGATTATAATACA TCACAACACCGTGCGTTAGTGAGAATTTAATCGGCTATCAGAACCCGATGAGCAGTACTATCGATAAGCC CAGCCCAGGGCGTGTCTCCACCCCCATCACGGTCAAGACGGAGTTCCCTTCTTCAGCAACCGACCACCCG ATGGATCAGCAGCCGACGGCGGCTCCAGCCGGCGGTCAGACACCGCAGACAGCACAGGGGGGACTCGGCA TCAAACTCAAAGGTATGGAAGCCAACGTCACACTATGGCAGTTCCTCCTGGAGCTTCTGATGGACAAAAA CAACGTCCATCTGATCACGTGGACGGGCAACGAGGGCGAGTTCAAGCTCAACAACTCGGAGGAGGTGGCC CGGATGTGGGGCCTCCGCAAGAACAAGACCAACATGAACTACGACAAACTCAGCCGCGCCCTGCGCTACT ACTACGACAAGAACATCATCAAGAAGGTCATGGGCCAGAAGTTCGTCTACAAGTTCGTGTCGTTTCCCGA GATCGTCAAGACCGAGAACAAGATCCCGTTCCGGGTGAAGATGGAGACGCTGGACGGACCAGCGAGTGGG GCGGGGAGTACGGCGGCCTCCAGACCGCAGAGCTACCCCGGGATCACGGTGACTGCAGCACCGGACAGGA AAAGCCCGGCCGGACATGTTAATGGCCACCACCAACTCCACCACCACCATCATCGACATCATCACCACCG GGAATCGCCGAAGTATGTGCCGAGTCCCCTGGCGCGTTCGCCCAAGCGCGCCAGCCCGGACACGCACGAA ACGGCCCTGAATTTGAAAAAGCACAGCGATGATCGCGAGGAGATCGGCAGCCAGGAGCAGCAGTGGAGAT CCTCGGGAAGGCTGATCCTCAGCGCTGGTCACCATGATGCCAGGATCTCGAGAAGCCCTAGTCCCAGGAC CGCGGCTTTAGTCGGTGGTAACGGCTCGGAGGCAAGGCTGACCGTCGAGCCGAGCCTGGTCACCAGCACC GGCCGGCCTTTCAGCACCGTCTGCACCCCAAGCACGGCCTCCACGGCCATTAGCAGCTCGTCCACCAACC GACCCAAGCCCTTGCCCATCGCTACCTTGCAGACGCCCAAGGGTGACTTGTTCGCTGCCGCCATGCCCTC CAAGATGTCCACCACCAGCCCGTCTTTCCTGACCACCTCTAACGGGCTTACGGTGCCCTGCTACGCCGGA CCACACACCCCTTTGCCCGGCACACCAATCATGGTGGCAAGTCCCATGTTTGGTCAAAGCGGCACTCCTT TGGTTCCACTCCATTTCTGGAGCACGTTGAGCCCTCTGGCTCTCAGCCCTTCTATGAATTCCCAAATGAA CACATTCCAGTTTCCCGCCATTATCAATGGACTGACTGGCACACCAGTCTCAGTGTCTGGCATGATGCCC ATCCATACCCCTACCGTGGTCTTTTCACCAACGACGACCAAGCCGATAGTTGTACCTTGAGCCATACAGA CTGATTTAAATCTTGGAAGACAAAAATTCCTCTATTAAAAAAAAAACATTGAAATGGTTTCCCGCGAGTT CTTGGACTTAAGTCTGACTTTTTGTTTGTGATAAAGTCCCAACAGATGACTGAAATGCACGGTGTCCAAA TTTATTGAGGTCCAGCCGTTTAGGTCTTTTTGAGCTGATCTCGTGGTGGCTGTGCACACGACAGCATTAA CTGGCCGGCTTGAATCAAGTCTAGCAAATAATCGTCCAAATGTTGTCTTGGAACCGTTACGTCTCATATC AATTTTTTAGGCGCAAATGATGTGTGAATGTCGTCCGCTCATATATCATCCAAAATACACGGATTTGCAG GAGTGTGTTTGCACTATAGCACTCGATTTTTCTGGTGGATAATGTAGTCCTGTAGGTACAGGTCGATTAA ATTCGTATAACAAACATTCTGTAAATAATATTAATTTGGCTGGTTTTCTTCTTTTTTGTTGTTGGTGTAT TGTTTAGTTTAGTGGTATTAACGATACACCATTCGGAATTGTATATATAAAAAGGGCTGTGCCTTCAAAA TATTTCAAGGAAAAAAAGACAGAACTATTTTTTTTTCCTGGATAGAGTGAGATTATATTTTTGTAAAAAA AAATAAATAGTTGTGGGATCCTGTTTCCAATGGGTTAATATTTTCCCGTTCATTCCGGATCCGCGCGTAT CAGTTTCGGAATGATGGTGACCCCGGATCCTCGGGTCAACATTAAATAATGTACATACACGTAGGGGTTT TTGTGAACATAAAAGGGGTTTTTACCGTCTGTTTCCCGCCTTCATGCACACTCTCCTTTTTTTTGTCTGT GACGTCCTTCCGAGTATGAGATGTCTTATTTTCAATGTCGATACCAGTCACTCTTACACACGACCGGAAA AACGTCAGACCCTATGCGAGTCTAAACTGTGCCGTAGGTTTGAAATGAAATGTATGTCGGTTTCGGAAAA CCTTGAATAACGCAAAATGCTCAAACTTAAAAATGACGTTATCCGTTTGATCTTCTCTCTGTGAAAGTCC GAAATAAGTACCACGCTTATACATAATCATAAAAAAAAATCATCTACCAAACTTTCAGCCTCCAATTTTT AAAGCTGACCAAAATAATCTGCAAACTGGCCTTTATTAAATGTATGTTTGGGTCCACGCTATACCGCGAT ATGAAACGTGCATCTAATGCTCTTTAAGTTTAACACGGGTTAGGAGGTTCGGGTTTTTTTTTTCAATCTA AAAAATAAGTGTAGATGTTACTCACGTATTATTAGTGACGTTTCACTCCTGAGCTAGGAGCTTCGTCAGA CTGGCAACCAAAACTGCCTTTTTATATCCTTTAACATGGTAAGGAAATATGCGGACAAGCTAAGTTGTAG ACTTTAAATACATTGATTACCATTGCCTAGTTTGTTTGATTTATCGCGTGTGTCCGATTCTATACTCATC TCACAATTACTTTGTACAAACAATGGTATATTGTTTTCTGAAAATGTGATACGAATGGTACCAGTACCGG TAACTGAACTTTTCTTTGACACCAACAGAGGAAAAAAGGATTATCGAACAATGTTTACAGATCTATTGGT CCAAATTATATTTTAAAATGTCATTGGCCAACACGGATGTAAGAACAAAAGGGGAAAAACTGGGATCCGG AATCAACGACGCGGGAAAATATGATACTGTTATATGATACCGGGGTAGAATAAACAAGCTCACATCATGC CTCCAATAGAATGAAACAAGAAACTGAAATGAAAAGAAAAGAAGTTGGATTGACGTCCCCGGTTTTAAGT CAGTTTTCCTGTTTTGTTTTTAATATTATTTCACATTTTAATTCCCCTTCCTTAAAGAAACAGAACTTGG TATGCAAAGACGATTACGATCAGTTCCCCCCATTCCTGATGGGCCGTTTTCATTGTATGTTTGTGTATGA TCACTGTCTGTATGTTGAGCAATCTTTATGCCAAATTCGTGTTGCTCTGAACAAATGTCTGTATATAGGT ACAGCCTAAAACAAGGCTCCTATCTCGTGGCCAAAATAGGCTGGTGCACATGACTTGAAGTAATTTTACC CCGGTTTTGATATCACAGTCCAAGTGAAACTAGACAACTGAAGAAAAAAACCGGCATATTATTTCAAGAC AAATTTAATTTCAGTCGTAAGATCTAATTTATTATTTCGTGTCTTTTTCTTCCATGTTGTCTATGACAAC CAAATTCACTCTCTGGACAATTCTCCATGTGAAAAGGAACTTAACTATGATAACGACAGTTGTAGTAATA TGAAATTAGGTTTGAAGATCTTTTGCTTGTATTATATCACATTGCATTATCATATTTTTCCAAAAACAAC ACTCGATTGAATTCATTCCAACCCATTAAACGGCAATTTTCCGTGATAATAGTTTTGTTTGTATCAAAAC CGAAAAAAGACCTAATTGAACCAATTAATGTTTGTAAGTACGATTTTTTATACCCGTAAAAAAATGTACA TTAATTATTAATCAGTGCGTTTGCAATTTTTGTGTAAAAAAAAATGTTAGTAACAAAATACGTATTGTCG CTCACGCTGGACGTGGCTGAAAGTTATATCAAGGAAGATTTATTTTATAATTCATAAGTTATTATTTCGT TTGTCTTGATGTTTTGTTGTAAAGCAGAATTAAAATTGTGCTGTGCTGTTTCGATGATTGTGAAGAACAA GCGAGCCTGAAAATAAAGAATGGTATAGCTTAACCGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds