Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT109076.1 TSA: Strongylocentrotus purpuratus WHL22.641632.4 mRNA sequence CCACCATCTATATTATGTATCCAGCCATCAAGAACAAACCTGTCTATTAACTGCAGCTTATCCTGGAAAG GAGTCATCCATCAGGAGCTGTATGAATGCTTTCATGCAAACCTGCCCATGTCATCAGAGATCAAAATTTT CTACCGAACCTCATCGATCAAAGAATTCATTACAGCAAACTTGCACACATGCTATAATTATTTATTGTCA CCAATTGGGCTTTCATTCCATGATGTTCTTTTGAAATGATTACAAAAGTGAATTTTAATGGACAGTATTA ATAACATGGCGGACATCCAAAGCTACTGAATTCTAGTGGTACCAATGTATACCATGTCATCTTATAGTCT GATAATCTGCATGTCATATAAATGAGAGCCAAAGGGAGATGAGAACAAAAATCATATATGATGAACTTAT TGCATTTGATTATGAGAAAGTGATCTACATAATCTTCCTGAGATGAAGGAAGATGAGAGAGAAGGAGGAG GAGGAGGAGGGGATGGAGAAGTAGGAGGTGGGATGAGCAGTGGAGTGACAGAAGAGCTGAGTGATAGTAT ATCAGGGGAGATGATACAGAGCAGAGGAAAGGAAGCTGTTTCAAAACCAGCTAAAGAAAGACCCTACTCC TGCAGAAGTACAACATCCTTGAAAGATGAAATAGAACAACTGTCCAACAAGAAGAAGGAGTTGCTCATGA AAGATAAAGAACCAGTTGTATGGAAGCAGAACATCCAGGAGCAGATTGAGAAGGAGTTGGAGAGGAGAGT CAGAGATGCTCTGGAGACTCCGCCCCTGGAGAGGATGAGGAAAAATAAACATAAAGCTCGTCTCAGAAAA CAGCAGCAGAAGAAGAAAGAAGAAGAGAAAAAATCCCTGTCCCTAGAGGAGTGTGATAGCCATGCCCAAG CCTTGCCATCTCTCAAAGAGAAATTCCCCTGGAACGACGTCAACTCCCCCTTCACCTACTTCGACGACCC CAACAGCCCCACGTGGTTCGAACGCCAGATCTACAACAACCAGTACAACGACTGCGGCAGCGAAAGCAGC GCCGGGTACCTAGATGTCAACGGCAACCACAGGACTCAAGAGGAGAGAGATGCATCGTCTCGTAATTCGG CAAGGCCTCGAACTCGAAGTGCGGGTGTCGCGCTGACCAGAGAAAGGCAAAGAATCGCGGATGATAAAGG TGGGGATACAGACGCGGAAGAGGATAGAACTATTGCGGAGATGAGACGGAAGACCTTCCATCGCTTCACG AGCGCAGGGTTCAAGGAAGCGATGAGGAAAGGCAAAGGGATGCTCAAGAAGATTGGAGACGGAAAGTATG TGGATAAGAACGGAGTGATTCTTTCAGTGGATGGCCCTTTCTGGCCTCAGGAGTGCGGACCTCTGTACCC CAAACCTGACCACATCAAGAAGGTACCGTCTTCTGCAGAACCCCTCTTTGATAAGGTCCCTCAGGATGGA AGAACTATTCACACCCAGAAGACCAAATGGTACAGACCGTGGGAAGGCACTCAGAATGTATTCGACTCAG AGAGGACGACTAAGGGGACCATTCCACACACGATACCGGAGGGATGTTGTCCAAGCTTAGTCTTTGAGTC ACGCTTTGAGAGCGGCAACCTTAGACAAGCAAGACGAATAGGTCAGTTTGAGTACGATCTTGTTCTAAAG ACCGACCTTTACACCAGCCGTCACACCCAATGGTATTACTTCCGGGTGCAGAAGATGCGTCCAGGGGTCA CCTATAAGTTTAACATCATCAATTTACTCAAGAAAGACAGCCTCTACAATCATGGTATGCGACCATTGAT ATACTCTGAGAAGGAAGCCCAGTCTAGTGGCCAAGGTTGGGTTAGGGCCGGTCATCACATCACATATTCT AGGGGCTACGGTTTCAACAGAAATGGCCTCCTCCATCCTGAAATTACATACCATGTACTGGAATGGCAAA TGGAGTTCAAGCACGAAGACGACACATGCTATCTTGCCCACTGCTACCCCTACACCTTCACCGACCTGTG CCAGCATCTAGATGACCTGATGGCCCAGCCAGAGAGACGCAAGACCATGAGACGAGATGTCCTCTGTGAG AGCAGGGCAGGCAACAGTTGCTTCATACTCACCGTCTCAAATTTCAGCGATCATCGCCCTAAGAAAGGCA TTGTGGTGACAGCTAGGGTACATCCTGGTGAAACCAATGCTAGCTGGATGATGAGAGGACTTCTAGACTT CATCACCAGCTCAGATCCTGTTGCCAAGGAACTGAGAAAGTGCTACATCTTCAAGATCATCCCCATGCTC AACCCTGATGGCGTGATCGTGGGAAACTATCGCTGCTCGCTGGCGGGTCGCGACCTGAACCGTAACTATC GCCATCCCAAGAAGGAATCGTTCCCCACTGTGTGGAACACCAAGCAGATGCTGGCTGACTTTGCTGAGGA ATGTGAGGAGATCTTGGTGTACTGTGACATGCATGGTCACAGTAGAAAACACAACGTCTTCATCTACGGC TGTGACCCAGACAAACAAGAGCTGGATATGGCTGCTTTCCTGTGTCAAAGGTTGTTTCCATGGTTACTTT CCCAAAAGGCACCAGACAAGTTCTCTTTCCGTGGTTGCAAGTTCCGGGTGAAGCGATGCAAGGAGGCCAC GGGGCGTGTTGTGATGTGGCGGCAGATGGGTATCAGTAACAGCTTCACGTTGGAAGCAACCTTCTGTGGC AGCAAGGACATTACAAGTCATGCTCCGAGACACTTCAACCTGCAAGACTTCCAGGACCTTGGGCGCCATT TCTGTGAGGCTCTCCTGGTATATCACCAAGCCCAGGAGAACACAAGTCTTCATTCTGAGTTGATTCTAGA GCTGACGAAGGAGATCACGCATCACATCCTCCTCAGCCGTGGTCTGCTGCCCCCAAACATCCCATTCCCA GATCTCTCTTCTCTCAAAGAAGTCAAACATGGACAAAAGTCCAAGAAGCAGGGCGGGGCCAAGTCAGACC AGGACGGGTCTGAGTGGGCGGGGCTGGACAAGAGGACCAAGTCCAAGCTGGCAGCGCTGAAGGTGATAGA CACGCTGAGCTCCGAGACCATCCAGGGGTGTATTGACCTTCTGGCTGACCTTCACATCAACAAGGAGTTT GCTGAATCAGACACCAGTGACAGTGACAGTGCATCAGAGTCTGAACTGCCCAAAGGACAGAACGATGAAG ATGAGGACAAAGTGAGGAAAAAGAAGAAGAAAAAGAAGCTGAAAGGAAGATCAAAGAGTGAAGAGGCGGT CCAACCAGATCCAAGCGCGGAGGAGCAATCCAAAAAGAAGAGGTTGGTACGCAGACGCATGTGGCATAAT CCCACATTCGTCCAATCCTGGGTGTCGGATGCCATCGAGGAGAATGCAGAAAAGGCGATCAAAGTAGACT CGCCGGGCCAGCCATCGATCTCTAGATTACAGACCTTCCGAATCGGTAAATGCACACAGGCCCTCAAGAA GCACCCTCCGTTTGTGAACCGCTACGCCAAACGTACCAATCATGGCATCCCCATGTTTTCTCAAGAGAGG ATACAAGAAAGGGCCAAGGTACGTCAGATGGAGCTTTATCTTTGAATAATCATTGGTTTGGCCGGCTGTA TTTATTTCTGGATGTGATGTGCTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds