Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038189101.1 PREDICTED: Patiria miniata serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like (LOC119719614), transcript variant X5, mRNA TCTGATTCCCTGAATCTGCCAGTTTGTACATTCAAGTGTTTCCAAGTTGCAAGTTTGGATCGAGAGCGTC ATCATCAACTTCTTATACATTTGTGAATTCTCAAATCATCATGACGACTACAGTGGAGCTGGCTAGTTTG ACCATAGAGAAAGGTTTGACACTGGACAGACCGACTATCTCTATTGCCGATCCCACTGTGGTGTTTTCCG ATCTTCTGTTCAACGCTGATCTAGCGCGAGGACGTTGCCCACCACTGGTTCAGGCTGTGTTCTATGGTGA TGCTGACGAGGTTAGAGGCCTTGTGTATATGAATGAAGATGTCAACAGCACGGACATGGAGCGGCGTACG CCCATTCATGCCGCAGCCTTCCGTGGTGAAGCAGAGATCGTGGATTTTCTCGCCCAGAGTGGTGCCCGAG TCAACACCAAGGATAGCAGATGGCTGACACCGTTACATAGAGCTGTGGCCTCCAAAAGCCTGAGCACAGT CAAGATGCTTTTGAAGCACAGCGCCGACGTCAACGCACGAGACAAGAACTGGCAGACACCGCTGCACGTA GCCGCAGCCAATAATGCCATTGAGATCGCAGACACGCTCATGATGCATCTTAGCACTGTCAATGTGACCG ACAGGGCTGGACGGACGAGCTTGCACCACGCAGCATTCAATGGGCATGTCAATATGGTGAAACTCCTAGC ATCCAAAGGAGGAACCATTAACGCGCAGGACAAGAAGGAACGGCGCCCTCTACACTACGCTTCTTACATG GGGCACGTAGATGTGGTCAAGGCCCTCCTGGAGAATGACGCTGATATCGGCTGCAGGGATCGGACCCACT TCACCCCTATCCATGCGGCCTCTGCCAGCGGGCAAGTCAGCGTAGTTAGAGTTCTGCTGGACTTTGGAGC AAAGACAATGACACGATCTCCAATGAGCAACAAAAAACAGAGTGCGGACGTGGTGAATGCGAATGGCAAC ACACCCATCCATATTGCCTGCCTGAATGGCAATGATCTGGTGCTGAGGGAGCTGATCCAGCATGGTGCCG ACATCAACGTGCTCAACCACAAGGGACAGTCTCCTCTCCATCTGGCTGCTGTGTCGCCCCATGGAGGCAC GTGTCTGGAGATCCTACTGAGCGAGGGGGCGGACGTCAACATCCGCTGCAAGGAAGGCTGCATGCCCCTG CACATGATAGCGCTGCAGGGGCGATACACACGGGCAGAGAGCTTGATTGAACACATAACAGAAGTTTTAA TAGAGCATGGTGCGTCGGTGGATTGTGCCGATAAGAACGGAAACACGCCGCTGCACCTTGCTGCACAGAA TGGCCACCAGGAACTCCTAGTGACCCTGCTCATGCATGGAGCTAACCCTACCAGGCGTGGCATCCACGGA ATGCTTCCTCTACATCTTGCAGCTCTGAGTGGCTACACCATGTGCTGCAAGAAGCTACTGGAAGCAGCAG AGTGTGACATTAACGCCTTGGATGACAACCATCGTACCTGTGTCCACTGTGCAGCATGCTCAGGCAATGT AGATTGTTTAGACCTGCTGATTCGAAGTGGTGCCGATTTCAGCCTAGCGGATAAGGACGGTCGGACGCCG TTACACTACGCGTCGGGCAACGCCAATCATCAGTGCACGCTGTCCTTGGTGGCCATGAAAGCCAACGTGA ATGGGTTAGACACCAGAGACTGCTCACCGTTGCATTATGCCGCAGCTGCAGATATGGAGGCAGATTGTGT GGAGCATCTTCTGCATAACAACGCTAATCCTCGTCTGCGGGACGTCAACGGATACAACACGCTGCACTAT GCTGCAGCCAATGGACATAGCCTAGCTGCTGAGAAGTTGCAGGCAGTAGCAGCTAGTGATCTACTCAACA CCGGTGGCTCTGCTCCGCTCACCACACCTCTTCATCTAGCGGCCTACAATGGTCATGTGGACGTTCTCCA CGTCCTGATGCGATCCATCGTCAACCTGGACATTCAAGACGCCAACGGCCGGACAGCGCTGGACCTGGCA GCGTTCAAGGGCCATCTAGACTGCGTGGAGGCACTGGTGATGCAAGGAGCTACAATACTGGTCAATGACT CGGTGTCCAAGCGAACGCCATTGCATGCCGCAGCATACAATGGCCATGCTGAGTGCCTGAGAATCCTGCT AGAAAACGCAGACCAAGAGGGGGCAGTAGACTGCCTGGACAACCAATCACGGACTCCACTGATGGTTGCC GTGAGCAACGGTCATACCGACGCTACACTGTTGCTTTTACAGCATGGGGCTAGTCTGAGTGCCAGAGATA TTCATCATAGGACTGCACTGCATCGTGGAGCAGCTAACGGACACGAGGAATGTGTCGATGCGCTGCTGCA GAGCCAAGCCAACACGTCCTGTGCCGATATCAAAGGTCGTACACCGCTGCACATGGCAGCTGCGTGCGGT CACGTTGGTATTCTGGGGGCGCTGTTGCAGGCGGGATGCACCAATCACTTGGACGGCAATGGCTACACGC CCATACACTGGGCTTGCTACAATGGGCATGAGAATTGTGTAGAGTTACTCCTGGAGCAAGATCCTAAAAT GTTCTTCAAGGGGAACTCCTTCACTCCATTGCATTGTGCGGTTTTAAATGATAACGAGTCCTGTGCAGAG CTGCTGATTGAGTCACTAGGAGACGAGATCGTAAATATTCAAGACCGGAAAGGAAGGACACCTCTCCACG CCAGCGCCCTGAATGACCAGGTAGAATGCCTTCAGCTCATGATGAAACATGGCGGCCAGCCCAACATAGC TGACCAGCTGGGCAAAACCTGCCTCATGGTGGCAGCAGAGAGTGGATCAGCAGGTACCATCGAGTTGATA GTGAGTAGCGCTTGTGCCGACCTCAACGCCTGTGACAGTCGCAAGAACAGTGGACTACACCTAGCCTGTC TCCAGAAACACGAAGGCTGTGCATTGATGATACTGGAGAAACTGGAAGAAAGTACCATCATCAACTTGGC CAATGATGACGGCTTGACGCCTCTGCACATAGCTGCCAGTAACGGTCTTGTGTCAGTAGTACAAGAATTA ATCTCCAAAGGAGCTAGTCTATTAGCATTGGATAACAAAGGTTACACCCCAGCCCTCAGCTGTGCCCCAA CCGACAAGATAGCGGACTGCTTAGCCATCATCCTGGCCCACATGTTACCCTTCTCCCCGGCAAGCACCGC CACCAACTCCCGTATTGCCTTGGCCATGAGCGGCGAGCTAGGCCGGCTCCGTAACGCCAGCTTGGAGTTT ACTGACGGCAACCGCAGTAGAGGAGAGAGCAACGCCGATACCTCAGACTCGGAAACTTACTGAAAACAAA ACAGTCCAAAACCGCATGGGTATACAGTGGCAGGTCCAGGATTCTCCAAAGGGGGTGGCTGGAATGTCGA AGTTATCAGATTTTTCAGGGTTGATGAGACGGTCAGTACATAAAAAGATCAATGGCCTAAAGCAATGAAT CAAGATTTACAATATTTATATAATATTGGATGGCTTTGAGAGGGATACAAGAATATATTGCACAAGCTAT AGCAATATTGCACGACTCAAAAGACCAGGTTATAGCAAGTGCAATATGTTATTATATCCCTAAAAGCTAT CCAATATTATTATTTATATCAGACTGACTTGATCCAAAAGAAAAACAAATCAGGAAACCGTGTTTATTTC TCAAATGTCGTTCGAATATTCTTCGTTTACCGACACAATAGTGTGCCTATAAGTAACCTGCTACGCGCTG CGTCCGCTTTCGATGGTACTGCGCGCTACGCTCTGATGACTGGTTGACACCTGTGAGTTGCTACGCTCTT GATTGTGTGGGAACCAGCAAAATTTGTGAAACTGCCCGGATGAAAACAATATCAAAAATCATATTGCAGT CATCCGGGTACTTCTTCCGATAACCGTACAATATGCTGATTTACTTTTGTACGTGGAAGCCTGCTATAAG TTATAATGAGTGATATCATTATTCAGGGAACTTTAAGGAAATTGTGGACTTTATAATTAGCTTTGGCCAG TCAGAGGGTGAGTGGTTAGCCACCCCAACCACCCCCTTGGATCCGCCCCTTGGTATATCAAGCCACAAGC TTAAAACATCGGATCGAAGAAAACAAAGGGCATTTGTTTAATGGCACCAAACTTGGCGCACATAATTGTT TTTTTTTTTTCCGTAGCACCTAACCTGATGTATATTACATTTACCCAAAATTTGTAGACATTAAAAAGTA CCTCAGCGTTTTGATCTAGATGAACTTTTTGATGAAATCTGAGCATTATTTTCTGGTGCTAGCTCTCATT TGTCTGAACGTATTATATTGTGATTGGGAAGACGATTTAGTGAAAAGCGTTCATTTTTTAATACGATCTG TCTGGTTGTTATAGTTACTGTTGGCAGCTTCTGTTGCCATGCAAGTGTCATGGTCAGTGACAGCAAAACA TTGCCCATTAATAACATTATAGTTATATTACAACAAAATTCAATTTCAAACATGTGGGAATGGGCACACT ATAAGAAACCTATAAGAAAATCCTAAATACTTATATAAGTGTACAGTTAGAAACGATCCACAACTACATG TATAACAACATGCATTACTTACACCATAAATTAAATTTCTGCATGAAATAAAAATATGTGTAAACATTCA TCACAATACAGTCAAAACGATATCAATGAACAGCTTTCTTCGTGTTGAAGAACCACTTACATAGTGTACA ACTAACTAAATTTCATCAATTTCTGTGGCATGTGCTCATAAGTGACGGGGCCGTTAAATGAATAGCAACA CACTGAAACATTTGTTAATAACTATACAAGTCTCAGAATTGTATGCATATTACGGAACACTCTTTTCTTG CACAGTGTGCGTTCAGTTTTAAAGAACGCCTGACTAAATCCCCGTCATCTGATAGGTATCTGATAATTAT TCGTCCCAGCCACGGCCCAGCCGCTTCGCAAAAATAGAATTTCTAATCCATGGTAAATGGAAGTTCCATT GCACGGTCACACGTTTGGTGGCTCTAACCAATCGGATGACAAGGATTTTTTCAGGTGTTGTATAAAACAT AAAATGAATGTGTCACATGCGTGCAATGGAAAGAATAATTTCATTCAGTGACAGATGGAATGTTCCATTC CACTCGGCTTCACTTCGTAGAATGGAACATTCCATCTGTCACCTCATGAAATTATTCTTACCATTGCACT CATAAAACTTTCATTATTCGTGTATTATTCATTCTATGTTACTTATTGTACAGCCTTGTGAGTCGATTGC ATTTCAAGTGACCAGTGACTGAATGTAAACATATAAGCAAGTACAGCACCTATTCACTGGATTTAATTAT GTGCACAAGATGGAACTTGCACTGTTAACTGCATTCTTTCAATTTGCTAATGAATACTAGTGTATTATTC CAAAAATATAATATGAAAAAAAAATTGTACAATATCAGTTATTTTCTTATGGCAGGACCAAAGGTTTGAA ATGACATGTATATCTGTCTTCTTTTGTTATAGTCAATAATTTGGATTGTAGAATTAATATTTTTAGGGAT TAACAAATGTAATGGTTAATAACTGTTAGACTTTAACATGTCTTTCAAGCAACACAGTAAGTTGCAGGTG TCATTGTCAAATCACATTTTATTTACTGACCGTTTTTTTTCAGCAAAAGTTGTCAATATTTCAGCCAAAT GTTGTAGTGTTACTTACTGCTTGTGTATTTCGCTTAGCATACATGTTAAAACTGGAAAAATTCTAAAGTG AAGTTAGAAAATTAAATTTCACTTGCAGGGCAATATTTACCTCACCCTTGTTCACGTGTCCTGTGTATCT GATCATGTATGGTATTATTTTGAAAAAAAAATACACAAAAATAGAATGAACTTTAATTTTGTGCCATATA CTATCCCAGCAGAGAAATGTTGCCCTTGATATACACTTACCTCCAATTGTTTACGTTTACTTATTAAAAA TTAAGATTGTATTCTGCTTTTGTGTAATCCACTGTTCCTGAAATGGGCATCTATTATTTACATTTGCCAA TTTGTTTTTTATTTACTAATATGGTACAGGCTACACTGAGTTTACTACTAATTATCTTGCAAAGCGAGAA TTGAAACAAATGTTGTGAAGAGAAGTTTGGAGAGACACTGGAAATAGGTTTTTAGCAACCCCTTTATAAT GGTGTGTGGTGCAGCATCAGACTTTAGAATAGACCGAATGTGTAGTAGCCATTTTAGAGGGCATTTTGTT TTGTAATTCAGTAACAATGCATGTACAAACGGTTCATGCATGCATAGCCCAGCAAAACAACGACATTGCT TTCTAAGATGGCTGCTACGAATAAGGTCTGTCCTCGTGTATGTGTATTTTGTTGATGGCGGTTGGAGAAA TTGTCAAAATACAAGCCATGTGTACAGCAGCTATACGGCAAAACTGATGCAGTATATACATGTAGCTCGG ATATACTTGTTTTTAAATTTAGAAATGATATGGGGTGTACAGAACGGTGATCTGAGGGATTCAACCTGCC TGGCAAAGGAAATTAGGTTGTGATTTCAAGCATTGTATATTTTTATCTCACAAAATTTGGCCGTTTTGTT TTGCATTTACACTTCCCTTTTGTTATTAAGTAACAAAATAACTACAATTTGTAAGTCGGAAAAAAAATTT CCTGATGAGAAAAAAACGGCTTTCTCTTTATTTGTAACAATCTCCCCCCCCCCCCCCCTTAAAAAAGACT AAAAACCTGGGACGGGGTTATGGTGAACTGCCCTTGTTGTGTTTTGTGTTTCAGAAAATGGTGCTTTTCT TGGTCCGCCATGGTCAGATTTAACTTGAATAAAATGTAAACATTGCTGATTTGATTAAGTTCATGAATTT GACTCACAAAGCTAATAAACCATTACGTTAACAGGAATTGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds