Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038189107.1 PREDICTED: Patiria miniata serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like (LOC119719614), transcript variant X11, mRNA CTGATTCCCTGAATCTGCCAGTTTGTACATTCAAGTGTTTCCAAGTTGCAAGTTTGGATCGAGAGCGTCA TCATCAACTTCTTATACATTTGTGAATTCTCAAATCATCATGACGACTACAGTGGAGCTGGCTAGTTTGA CCATAGAGAAAGGTTTGACACTGGACAGACCGACTATCTCTATTGCCGATCCCACTGTGGTGTTTTCCGA TCTTCTGTTCAACGCTGATCTAGCGCGAGGACGTTGCCCACCACTGGTTCAGGCTGTGTTCTATGGTGAT GCTGACGAGGTTAGAGGCCTTGTGTATATGAATGAAGATGTCAACAGCACGGACATGGAGCGGCGTACGC CCATTCATGCCGCAGCCTTCCGTGGTGAAGCAGAGATCGTGGATTTTCTCGCCCAGAGTGGTGCCCGAGT CAACACCAAGGATAGCAGATGGCTGACACCGTTACATAGAGCTGTGGCCTCCAAAAGCCTGAGCACAGTC AAGATGCTTTTGAAGCACAGCGCCGACGTCAACGCACGAGACAAGAACTGGCAGACACCGCTGCACGTAG CCGCAGCCAATAATGCCATTGAGATCGCAGACACGCTCATGATGCATCTTAGCACTGTCAATGTGACCGA CAGGGCTGGACGGACGAGCTTGCACCACGCAGCATTCAATGGGCATGTCAATATGGTGAAACTCCTAGCA TCCAAAGGAGGAACCATTAACGCGCAGGACAAGAAGGAACGGCGCCCTCTACACTACGCTTCTTACATGG GGCACGTAGATGTGGTCAAGGCCCTCCTGGAGAATGACGCTGATATCGGCTGCAGGGATCGGACCCACTT CACCCCTATCCATGCGGCCTCTGCCAGCGGGCAAGTCAGCGTAGTTAGAGTTCTGCTGGACTTTGGAGCA AAGGCGGACGTGGTGAATGCGAATGGCAACACACCCATCCATATTGCCTGCCTGAATGGCAATGATCTGG TGCTGAGGGAGCTGATCCAGCATGGTGCCGACATCAACGTGCTCAACCACAAGGGACAGTCTCCTCTCCA TCTGGCTGCTGTGTCGCCCCATGGAGGCACGTGTCTGGAGATCCTACTGAGCGAGGGGGCGGACGTCAAC ATCCGCTGCAAGGAAGGCTGCATGCCCCTGCACATGATAGCGCTGCAGGGGCGATACACACGGGCAGAGA GCTTGATTGAACACATAACAGAAGTTTTAATAGAGCATGGTGCGTCGGTGGATTGTGCCGATAAGAACGG AAACACGCCGCTGCACCTTGCTGCACAGAATGGCCACCAGGAACTCCTAGTGACCCTGCTCATGCATGGA GCTAACCCTACCAGGCGTGGCATCCACGGAATGCTTCCTCTACATCTTGCAGCTCTGAGTGGCTACACCA TGTGCTGCAAGAAGCTACTGGAAGCAGAGTGTGACATTAACGCCTTGGATGACAACCATCGTACCTGTGT CCACTGTGCAGCATGCTCAGGCAATGTAGATTGTTTAGACCTGCTGATTCGAAGTGGTGCCGATTTCAGC CTAGCGGATAAGGACGGTCGGACGCCGTTACACTACGCGTCGGGCAACGCCAATCATCAGTGCACGCTGT CCTTGGTGGCCATGAAAGCCAACGTGAATGGGTTAGACACCAGAGACTGCTCACCGTTGCATTATGCCGC AGCTGCAGATATGGAGGCAGATTGTGTGGAGCATCTTCTGCATAACAACGCTAATCCTCGTCTGCGGGAC GTCAACGGATACAACACGCTGCACTATGCTGCAGCCAATGGACATAGCCTAGCTGCTGAGAAGTTGCAGG CAGTAGCAGCTAGTGATCTACTCAACACCGGTGGCTCTGCTCCGCTCACCACACCTCTTCATCTAGCGGC CTACAATGGTCATGTGGACGTTCTCCACGTCCTGATGCGATCCATCGTCAACCTGGACATTCAAGACGCC AACGGCCGGACAGCGCTGGACCTGGCAGCGTTCAAGGGCCATCTAGACTGCGTGGAGGCACTGGTGATGC AAGGAGCTACAATACTGGTCAATGACTCGGTGTCCAAGCGAACGCCATTGCATGCCGCAGCATACAATGG CCATGCTGAGTGCCTGAGAATCCTGCTAGAAAACGCAGACCAAGAGGGGGCAGTAGACTGCCTGGACAAC CAATCACGGACTCCACTGATGGTTGCCGTGAGCAACGGTCATACCGACGCTACACTGTTGCTTTTACAGC ATGGGGCTAGTCTGAGTGCCAGAGATATTCATCATAGGACTGCACTGCATCGTGGAGCAGCTAACGGACA CGAGGAATGTGTCGATGCGCTGCTGCAGAGCCAAGCCAACACGTCCTGTGCCGATATCAAAGGTCGTACA CCGCTGCACATGGCAGCTGCGTGCGGTCACGTTGGTATTCTGGGGGCGCTGTTGCAGGCGGGATGCACCA ATCACTTGGACGGCAATGGCTACACGCCCATACACTGGGCTTGCTACAATGGGCATGAGAATTGTGTAGA GTTACTCCTGGAGCAAGATCCTAAAATGTTCTTCAAGGGGAACTCCTTCACTCCATTGCATTGTGCGGTT TTAAATGATAACGAGTCCTGTGCAGAGCTGCTGATTGAGTCACTAGGAGACGAGATCGTAAATATTCAAG ACCGGAAAGGAAGGACACCTCTCCACGCCAGCGCCCTGAATGACCAGGTAGAATGCCTTCAGCTCATGAT GAAACATGGCGGCCAGCCCAACATAGCTGACCAGCTGGGCAAAACCTGCCTCATGGTGGCAGCAGAGAGT GGATCAGCAGGTACCATCGAGTTGATAGTGAGTAGCGCTTGTGCCGACCTCAACGCCTGTGACAGTCGCA AGAACAGTGGACTACACCTAGCCTGTCTCCAGAAACACGAAGGCTGTGCATTGATGATACTGGAGAAACT GGAAGAAAGTACCATCATCAACTTGGCCAATGATGACGGCTTGACGCCTCTGCACATAGCTGCCAGTAAC GGTCTTGTGTCAGTAGTACAAGAATTAATCTCCAAAGGAGCTAGTCTATTAGCATTGGATAACAAAGGTT ACACCCCAGCCCTCAGCTGTGCCCCAACCGACAAGATAGCGGACTGCTTAGCCATCATCCTGGCCCACAT GTTACCCTTCTCCCCGGCAAGCACCGCCACCAACTCCCGTATTGCCTTGGCCATGAGCGGCGAGCTAGGC CGGCTCCGTAACGCCAGCTTGGAGTTTACTGACGGCAACCGCAGTAGAGGAGAGAGCAACGCCGATACCT CAGACTCGGAAACTTACTGAAAACAAAACAGTCCAAAACCGCATGGGTATACAGTGGCAGGTCCAGGATT CTCCAAAGGGGGTGGCTGGAATGTCGAAGTTATCAGATTTTTCAGGGTTGATGAGACGGTCAGTACATAA AAAGATCAATGGCCTAAAGCAATGAATCAAGATTTACAATATTTATATAATATTGGATGGCTTTGAGAGG GATACAAGAATATATTGCACAAGCTATAGCAATATTGCACGACTCAAAAGACCAGGTTATAGCAAGTGCA ATATGTTATTATATCCCTAAAAGCTATCCAATATTATTATTTATATCAGACTGACTTGATCCAAAAGAAA AACAAATCAGGAAACCGTGTTTATTTCTCAAATGTCGTTCGAATATTCTTCGTTTACCGACACAATAGTG TGCCTATAAGTAACCTGCTACGCGCTGCGTCCGCTTTCGATGGTACTGCGCGCTACGCTCTGATGACTGG TTGACACCTGTGAGTTGCTACGCTCTTGATTGTGTGGGAACCAGCAAAATTTGTGAAACTGCCCGGATGA AAACAATATCAAAAATCATATTGCAGTCATCCGGGTACTTCTTCCGATAACCGTACAATATGCTGATTTA CTTTTGTACGTGGAAGCCTGCTATAAGTTATAATGAGTGATATCATTATTCAGGGAACTTTAAGGAAATT GTGGACTTTATAATTAGCTTTGGCCAGTCAGAGGGTGAGTGGTTAGCCACCCCAACCACCCCCTTGGATC CGCCCCTTGGTATATCAAGCCACAAGCTTAAAACATCGGATCGAAGAAAACAAAGGGCATTTGTTTAATG GCACCAAACTTGGCGCACATAATTGTTTTTTTTTTTTCCGTAGCACCTAACCTGATGTATATTACATTTA CCCAAAATTTGTAGACATTAAAAAGTACCTCAGCGTTTTGATCTAGATGAACTTTTTGATGAAATCTGAG CATTATTTTCTGGTGCTAGCTCTCATTTGTCTGAACGTATTATATTGTGATTGGGAAGACGATTTAGTGA AAAGCGTTCATTTTTTAATACGATCTGTCTGGTTGTTATAGTTACTGTTGGCAGCTTCTGTTGCCATGCA AGTGTCATGGTCAGTGACAGCAAAACATTGCCCATTAATAACATTATAGTTATATTACAACAAAATTCAA TTTCAAACATGTGGGAATGGGCACACTATAAGAAACCTATAAGAAAATCCTAAATACTTATATAAGTGTA CAGTTAGAAACGATCCACAACTACATGTATAACAACATGCATTACTTACACCATAAATTAAATTTCTGCA TGAAATAAAAATATGTGTAAACATTCATCACAATACAGTCAAAACGATATCAATGAACAGCTTTCTTCGT GTTGAAGAACCACTTACATAGTGTACAACTAACTAAATTTCATCAATTTCTGTGGCATGTGCTCATAAGT GACGGGGCCGTTAAATGAATAGCAACACACTGAAACATTTGTTAATAACTATACAAGTCTCAGAATTGTA TGCATATTACGGAACACTCTTTTCTTGCACAGTGTGCGTTCAGTTTTAAAGAACGCCTGACTAAATCCCC GTCATCTGATAGGTATCTGATAATTATTCGTCCCAGCCACGGCCCAGCCGCTTCGCAAAAATAGAATTTC TAATCCATGGTAAATGGAAGTTCCATTGCACGGTCACACGTTTGGTGGCTCTAACCAATCGGATGACAAG GATTTTTTCAGGTGTTGTATAAAACATAAAATGAATGTGTCACATGCGTGCAATGGAAAGAATAATTTCA TTCAGTGACAGATGGAATGTTCCATTCCACTCGGCTTCACTTCGTAGAATGGAACATTCCATCTGTCACC TCATGAAATTATTCTTACCATTGCACTCATAAAACTTTCATTATTCGTGTATTATTCATTCTATGTTACT TATTGTACAGCCTTGTGAGTCGATTGCATTTCAAGTGACCAGTGACTGAATGTAAACATATAAGCAAGTA CAGCACCTATTCACTGGATTTAATTATGTGCACAAGATGGAACTTGCACTGTTAACTGCATTCTTTCAAT TTGCTAATGAATACTAGTGTATTATTCCAAAAATATAATATGAAAAAAAAATTGTACAATATCAGTTATT TTCTTATGGCAGGACCAAAGGTTTGAAATGACATGTATATCTGTCTTCTTTTGTTATAGTCAATAATTTG GATTGTAGAATTAATATTTTTAGGGATTAACAAATGTAATGGTTAATAACTGTTAGACTTTAACATGTCT TTCAAGCAACACAGTAAGTTGCAGGTGTCATTGTCAAATCACATTTTATTTACTGACCGTTTTTTTTCAG CAAAAGTTGTCAATATTTCAGCCAAATGTTGTAGTGTTACTTACTGCTTGTGTATTTCGCTTAGCATACA TGTTAAAACTGGAAAAATTCTAAAGTGAAGTTAGAAAATTAAATTTCACTTGCAGGGCAATATTTACCTC ACCCTTGTTCACGTGTCCTGTGTATCTGATCATGTATGGTATTATTTTGAAAAAAAAATACACAAAAATA GAATGAACTTTAATTTTGTGCCATATACTATCCCAGCAGAGAAATGTTGCCCTTGATATACACTTACCTC CAATTGTTTACGTTTACTTATTAAAAATTAAGATTGTATTCTGCTTTTGTGTAATCCACTGTTCCTGAAA TGGGCATCTATTATTTACATTTGCCAATTTGTTTTTTATTTACTAATATGGTACAGGCTACACTGAGTTT ACTACTAATTATCTTGCAAAGCGAGAATTGAAACAAATGTTGTGAAGAGAAGTTTGGAGAGACACTGGAA ATAGGTTTTTAGCAACCCCTTTATAATGGTGTGTGGTGCAGCATCAGACTTTAGAATAGACCGAATGTGT AGTAGCCATTTTAGAGGGCATTTTGTTTTGTAATTCAGTAACAATGCATGTACAAACGGTTCATGCATGC ATAGCCCAGCAAAACAACGACATTGCTTTCTAAGATGGCTGCTACGAATAAGGTCTGTCCTCGTGTATGT GTATTTTGTTGATGGCGGTTGGAGAAATTGTCAAAATACAAGCCATGTGTACAGCAGCTATACGGCAAAA CTGATGCAGTATATACATGTAGCTCGGATATACTTGTTTTTAAATTTAGAAATGATATGGGGTGTACAGA ACGGTGATCTGAGGGATTCAACCTGCCTGGCAAAGGAAATTAGGTTGTGATTTCAAGCATTGTATATTTT TATCTCACAAAATTTGGCCGTTTTGTTTTGCATTTACACTTCCCTTTTGTTATTAAGTAACAAAATAACT ACAATTTGTAAGTCGGAAAAAAAATTTCCTGATGAGAAAAAAACGGCTTTCTCTTTATTTGTAACAATCT CCCCCCCCCCCCCCCTTAAAAAAGACTAAAAACCTGGGACGGGGTTATGGTGAACTGCCCTTGTTGTGTT TTGTGTTTCAGAAAATGGTGCTTTTCTTGGTCCGCCATGGTCAGATTTAACTTGAATAAAATGTAAACAT TGCTGATTTGATTAAGTTCATGAATTTGACTCACAAAGCTAATAAACCATTACGTTAACAGGAATTGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds