Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030978762.1 PREDICTED: Strongylocentrotus purpuratus nephrin-like (LOC115921356), mRNA TCAACAACGTTACAAGCGCAAGGAACACAATTTGTCTGCAGTTGTCATTTCAGTCAAGCTAGGACTAATT CTAAAGATTTGCTGATATCTAGGTTCAAAGTGAAGAGATACCAGATACATTCTCCAATCATGAATCACAA CTCCACCATATGTGGACGCCATCTTGCTTTGCTCATTGTATACATCAGTCTTTGCCTGCAAGTCTTTCCA GTCCGCGGCCAGCAGAGCTTTGCTACCACACCAGTGGATACTGAAGTTGTCGAGGGGCAAGATGTGACGC TCGAGTGTGCCATAGACAATCTTCAAGGCAGCATTATATGGTCCAAAGATGACACCATGCTTGGATCAGA CAGAACACTACCTGGATACGACAGATATGCAGTTAAAGGTGACGTTGCAAGAGAAGGTAATCTAGTAATC CTGCGAGCTGAGCTTAGTGACGATGCTGAATATCGATGTCATGTGACAGCTACGGACGCTACACATCAGA ATCTACGATCAGACCCTGCTGCTGTTATTGTGCTCTTACCCCCTGACCCACCGGTCATCGATGGCTACTC CAATGGCTCGGTCATCACCATCCAGCCCCCTGCAACGGTCACTCTCCCCTTACCCCCTGACCCACCGGTC ATCGATGGCTACTCCAATGGCTCGGTCATCACCATCCAGCCCCCAGCAACGGTCACTCTCCCCTGCAGAG CGAACAGTGGCAAACCAGCACCGGTCATCACATGGCACAAGGATGGGGATGATCTGGCGTATGGGAACCC TGAGGTGGTCTCAACACCTGCAGGAGATCCCTCTGGTAAGAGAGTGAATGCAGTCAGCACCCTAACCCTG AACCCAGAGAAAGAGGATAACGGTATTACCTTTGGATGTCAGGTGACTCATGGAGCTCTTTCATCTGCTC TCTCAACGTACATCACTCTCAACGTCCTCTTTGCCCCAGGAGCACCCCTCATCACCGGCTATTCGGCAGG TACCATTGTGAAAACGGGGGACCCGCTGCACCTCCGATGTACGTCTCTCGGAGGGAACCCCCTTGCAGAG GTATACTGGTATAAGAACGATGAGAGAATGGATTATTCCTTCATGACGGACGGTGTCAGTGCTTTCAACA CTCTCCCGCTTGAAGTTGATTACAGTGATAATAACGCTATCTACAAGTGTGTTGCTACCAGCGTGGTCCT ACCTCAACCGATGAGCACACAGATACAACTCACTGTCAACTTTGCTCCAGCATACGTGAATATCACCGGC CATGAGGCAATGGTTCAGTCAGATGCCACGCTCACACTCAAATGCACATCAGCCAACAGCAACCCGGCAT CCTCCATCTCCTGGTTCACCGGTGGTCGTCAGGCCCACACCCATGACGACGTGGTGGTCGAAGCACCCAA CGGAGGTTTTATCACTTCGCAGGAGCTGACGATCACGATGACGGCCGATACAGACAGCGTAGATTACATG TGCCAAGCAACCAATCGGGAGCTGTACGAGACCACTTCGGATACTGTGACTGTCAATGTCATGTATCCAC CAGAGCATCCTGGAATCACCGGTTACGAGGACGGCACGGAAGTCAAGGCCGACAATCTCCTGCGTCTTGT ATGCTTTGCAATGGGCGGCAACCCCCTCGCCACGCTGGTCTGGTACAAGAACGGAGAGGTCCAGGAAGCG GAGACCGGGACGCAAGGCATCCTCTCCACCAGTACCTTGAGGCTTATCTTGGACCAGACGGATAACGGGG CGGAGTACTCCTGTAATGCTTCCAACGAGGCCACGCCCGTCCCCCTGGAGGCCAGTGTCACCCTTAACGT CCTCTTCCCACCCAGTGCAGTTACTGTGAGTGTAGACCCACCAGAAGCCAAGGAGGGTGACAGCGTAACG GTGACGTGTGAGACGGCAAGCAGCAATCCAGAGTCTGAGATCTCCTGGTGGAGGGATGGGGTGCCTATAG AAGGCAATAACAACATAAGCGTTGAGGTGGTAGATGCAGAAAACGGGGGCAAAACGACCCGCAGTCGTCT CATGCTTGATTCTGTTACCTCGGCCAACAACGGGGGTGTTTACCTGTGCCGTGCGATGAGCGATCTCGTT GTTGAAAGCGTCAATGATGGAGTGACTCTGGATATCAAATTCAGACCAAAGATAACCACGCCTACCGGCA TCTCTCTGAGTAGTCATGAAGTACCTGGAGACCTAATCCTCAACTGCTCTGCTGAAGCCAACCCAGCCGA AATCACTTTCACGTGGCACAAGAATGCAGCCGCGATTGCTGTTGCCGAGACAGAGCGTTACACGCTGGAC GAGGAAGGATCGTTGCGCATCCACAACGTGTCGCGGGAGGAGGCTGGGACGTACATGTGCATCGCGAGTA ACTCGGAAGGAGCCAGCAATATAACGCTGACCCTAGATGTGATGTACTCTGCCAAAGTGACCACCGGGGA GGCCATCACCATCACCCTCAACACCCCCGGGGAGCTGGTCTGTGAGGCGGACGCTAACCCCAAGCCAGCC GGCTACATCACCTGGACCAGACCCGGCTTTGACCTGACGGGTAACGCCCATGAGTACGTGGATGGGCGTG GCATCATGAGAGTGGACAACGTCACCAAAGCGGTCAGCGGGATGTACCTCTGCCATGCGGACAACAGCAT CCCGCCGGCCGACACCAAGAATATACAAGTTATCATACAGTACCCCCCTGAAGTGGATCACTCCATGCCC AACAAAGTAGCCAAGAGCACAGGTCAGACAGCCCTCCTCCGCTGCAAGGCCGAGGGTGCCCCTCTCGTCC AATTTAACTGGTTTAAGGGGTCAGCAGAGGTCAATCTGACCAGTGACCATTACACGCTGGACATCAGACA GGATTTGACCTATGCTAACCGCTATGAGAGTCGGCTGATCATCAGCCAGATTGACGAGATCGATGATTAC GGGACGTACGTCTGCAAGGCTTATAATGACCTAGGAGAAGCACGCTTTGAGATACAGCTCGAGAAGACAA GTCCTCCGGAGGCCCCATCTAATCTTCAAGTGGTCAATATTGGTTATGATTCAGTTACTCTCAATTGGAC CAAAGGTTTCGATGGCGGTTTGGACCAGACTTTCCAGGTGCGTTTCAACCAGAAAGGCGGGAAGCAGTAT CAGTATGTGGACGTGGTACCTTCCGTTGCGACGGCATTCACGGTGACCAACCTCAACCCCAACTCAGAGT ATGAGTTCACCGTCAGAGGGCGGAATGCGCAGGGAGACGGGCCGTATTATCTCGGCATCGTGTCGGCCAA GACAACCATCAAGCCCACAGAGCCTCCAGTGGTGATTCCAACACGGTTGTTGGTTGGTAACATCCCTCTC TACATGGTGCTCCTCTTCTCGTTCCTGTGTATACTGAGCTGTGTCTTCATTAATATCTTCCTGTGCTGCT GCCTCGTCAAGAGAAGGGAGTCAAGGAAAAGGGTCGCTGCAAAATCTTCATCGATCAAGAAAACAAATGA TGAAATTGAGCTAGTCAAACCAATGGAACGCCCGGAGAGCCCAGCTTACAGCGACTCCAACACCGACAAC ATGTCGCATCGATCTGAGCACGATGATCGTTATTCCTACGACAACGTCAGCTATGAGAGACGGCGCTACG ACGACTACAGCGACGGACGGTCAGAGAGTTATGACCATTATGATGACCAGCAGCCGCCGGTCTCACCTCG TGTGGTCAGCGGCCGAGGGGGGCCTGGGTATTATAATAATTCGGCTTACAGGCCACCTTCTTACGCACCC AGCTGGGATTCTTACGAAAACCCACCAAGCACCGGCCTCTCCGAATCCCAAATCGATGACAACGAGGAAC GAGAGTACGCCGACATGCTACGACGTCAGCAGAAGGCACAGTACATGGGCGGGGCCTCGCACCCCCCTAC TGCCCCCAGCCCCGTTCCAAGCAGCCTGGGCAACTTTGTTCCGCTACCCAAAGGGGGCTCTTCTGCCCCT AGCCAAGTAGGTAGCGAAGAAGGGTACTTGGTGTAGTCCCCCAAGGATCAGTTTTTGTAACGATC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
