Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041599942.1 PREDICTED: Lytechinus variegatus inositol polyphosphate-4-phosphatase type I A-like (LOC121408449), transcript variant X3, mRNA GTCCCAGTATATGTACCGAACACAGACGACAAATGGGTTTTGGTACATGTGTGTATTAAAAGATGTAACA TTCCTGCTGTGATATTCATTGACACTCAACTAGCAACACAAGTATGATCAACAGCCGAGGATCTTAAAGG AAAAGCTTTGATTATACTACAATACCAGATGGAAGGATGCTGATTCAATAATTACTCTGAGGTTGAAAGA GAATATCTTTGTTGCAATCAATTTATCCAACAGCCAAAAGAGGAACATAAAAAGCAGATATCTCAAGAGT AACTTGATATTGTTGGTCATGAGGATGTAATCCAAAGAAAGAGAGAGGAGACCCAGCAACTGACTAGTCT GTGGGTCGGTCCTTGATCACGAATGTTGAATACCGAAGACAGGGGATCCACCTGGAGTTACTGGAGACTA AGCGGGATCCATCTATCTCCCAAGATGCGATTCAATCAGAAGGAGCTAGCGGCCGTGGGCATGGAGTCCT CCAAGTATTTCACCAAGGAGGGACCTCTCTACATGAAAGTCACAGCTGGTGGTTGGCGCAAGAAAGGTTT GGATTACAGTGAAAGGTGGTGTAGACTACGAGGTAATCTTCTGTTCTTCTTCAAAGATCGTAACCTCCTA CCTGAACCTCAAGGGGTTATTGTACTAGAACAGTGTTTTATCAAGGAGGAGTATGGAGAGGTTAAACCGC ATGCTTTCTCACTAGAATTTGTGGGAGAGGAACACAACCAGTACTTTGCTGCACACTCCACAGAACTCAG AGACGAGTGGGTGGCGGCGATACGCCTGGCAAGCTATGAGATGCTGCGTGGACAGTTACAGAAGCTACGT ATCCAGATCTTAGCACGCACAGGTCGTGACCCCATCAGTGAGGGTCAACCAGGGGTCATTGACCCAGGTG ACCTCTCTGATGGAACACAGAATGATCCTGTCTTGGAGATGTCAATATCTTGTAACAACCTTCCTATGAA ACCCAGCGGAGAGGAACCTAGTGTGTATGCTACCATCAACTGTATGACACCGCCTGATACAAGATGGCTA AACTGTGGACAAACCGAGATCATTGATAGACAATGTAATCCATTCTTTGTATCTACGGTAGTCTTTGAGA CCAGTCGGAACATCGCTGTCATCACCAGGTTACGAGCCAATATTTACTCTGTCGAAGACAGGACTAACCA ATCACATTGTCCTATAGGTCATGCCATCTGTTCCTTCAAAGATATCATTGCTGCACCTGGTAACAAGCTA GTACTCAATATCATCGGTGCTGATGATAGACCCTGTGGCGGCACCATCAGCTTACTGCTATGGGAGCTTG ATCAGTGCGTATCTCCTGAAACAGAAAGGAATTTTCATGTGATATCCCAGCCAGATCCTATCAGTAATAT GATCATTGGGGTACCACCATCACCCACCACTCTCCATCCACCCCGTAGTATACATACATCATCCAGTAGA GATTCTATATCTAGAGGACTCTATGGATGTGTATGCAATAAGAAATACCGTTATCTCAATCCTGATGGTA AGATTGTACAGGTGGAAGAGATCATGGCGGAGAGTAAACTATCATTCTACATTCCACAGAAGATGCTAGA ATTATATTTAGATGAAGAAAAGAGGAAGTTAAAAGAGGTTTCAGTCTTTGCACTGCCATCAGAAGATTGG GATAGAATAGGTCGAGCTGTAATGGCCGAGCACGTCACTATGATAGAACAGTACACACAGTCCTTAGAAC AACTCAAGAGGTTACAGAAAAATGAGTTAAGGTTATTCAAGAAGAGCACAGAACGTAACGATAAGAAACT AGAGTTTGTACCTACAAACCTCCATCTGCAAAGATTGAGAGTCGAAGAGCAAGGATCAAAAGGAGTTGTA TATAACACCATCACCTTTGGAGCACCCTGTGCACACACAATGAAATTCAAACATGGAGGATTAAGAAGAT TATTCCAACAATATGCAGATGAACAGAGTAGACTTGTTGGTAACAACCACTGCCTATCATCACAAGCAGC TGATGTATTAACAAGAGTATCAGAACTAAGAGAGAAGGTTGATCAGTGCTGTAAGGACGTTAGCTTAGCT GCCAAGTATAAAGACGTTACTACCATGAAGCATATGACACAAGCACTATATGAACAGGTGACCTTGCTCT TAGAGCAATGTGTAGTTCCAGCATTACAGAAAACCCATGGATCATATCAAGATGCTACTAAAGCTGAAGG GAAATCAGATCGTAAGCATCATAAATCACACCACCATCCTGTTAGTAGTGACAACGGTAGTGCTGGAAAT TCACGCAACAGCAGTATCAGTGTTTCCTCGCCTCCCCAGAGGAGTAGTATACTAAGCTCAAGCAGCGGAT CTACCGTTCCTAGTACTAGTGTATCTAATGGTAGCTATGAAGATTGGGAACTGAATGGACTTTGTTTACC AGGGAAAGCATGCCCTAATAGAGAAGGTGTCCCATCATGGGATTGTATGTGTAAGAAGATAGAGGATTCA GTGAGTATGCTTCAACAGGTGGTTGAGATGTTACCAGAGTCAGCTAATGCTGAGGAACGTATGGTAGCAG TTGACCCAGGGCTCCAATCACTCAATGAAGCTCTTATCAAGCTTCAAGAACAAGCCAAATTCAGCGTGGG ATTCCAGAGATTACAGGAGGAATACAAAAACCTTGATTTTCTGCAGAATCTACAGAACAGAAGGGATCTT GTATTCTCTCAAGTGATCACATCTCTGATCGTTGGTGTAGTTACACAACTCAAAGAGAATCTTAACAACA GGGGATATCTCAAGCAGCTTTGTAAGCTAGGATTCTTAGCTCACTTTGAGAGTCTACTCAGTACATATGG TGATGAGATGGGAATGCTTGAAGACATGTCAGCATCAATCAAAGATCTTCAGGGAGTTACATTCAAATTA ATTGCAAGCAAATCAGAAGATGATAAACCTCTCATATCAGGAAGCAGATGCAATGTAGTTGTAGAGATTC CACTGGACATAAACACCTTGACCAAGCTACCAGATGACCTTGGCCGTGGTCAAATTATCAAGGTCACTCC TGTTCTCTTCACTGTAGGGATCAATGAAGAACAATCTCTTGCTGAATTGTTTGGAGATACATCATTACAA GAGTCTATCAACAAAGAAAACATGCATAAACTAGATGTCTACTTTGATAGATACCTTAGATTAATACAAG TTGAAGATCGCCCACATTCCACAAGCACACTGAGTATTGAGCTTTTAATGACAAGTTTGAGGCATCATGT GCAGTCTAAGAGACAGAAGAATGTTGAGATACTACACTATAGCAGACAGTTGGTGAGAAGAATAAATGGT ATCCGTTACATGAGCTGTAAGAGTGCTAAGGATAGAACAGGGATGTCTGTGACGTTAGAACAATGTCAAC TACTACAAGATGAACACAAGATGGAGCCCCATATGTTTGTGCATTTACTCAACACCATGCGCAGTGAGGG GACCAGGAGAGACAACTCAAGAAAGAACACAGGAATCAACAAGTATGCCTTCAACAAAATGCAGTTAAGA GCATTCCCTAAGTTATACAGACCACCAGAAGGAACCTATGGCAAGACAGTTGCAACATAATCCGTAATGA TTACCAAGAGGGGGGTTTCATGAAAGTTGTCAGCACTGACAATCTCAGTGAAACCCTCAGGTTTTGATTG GCTGAAAAGCACAGGTCTATCACTGTATATGTATGGTATCTATTGAAGAACACTTACATTTAGTACTTAC AAGCTTCATGACATGGTGCCCTTTTCAGAAACAGGTGCAATCAAATATTTCTCTCAAAATAAGTAATTTA TAAGCAACTAGGCTCTCATTGCATAAAACTTACTATTGTGGTAACTCACATGGTAACAATGCTCATCAGC CAATAAAGCCAAGGATTCCATGAAAGATATCATTGGATTTCAACTGGGCGCCTGGGCGCAGAATTGGGCA CTTGAGACTTGTGATTGACAGTTTGCAACATTCTATAATGTACTTGTCTTATAAAAGCATGCAGTCATTT GTACTAATTGACAACTCATGATAAGTTGGTGGTTTGGTTTATCATTACATAGCTTTCAAAACCAAAGCAT TAGATATGTTTTGGCAGAAAACAGTACACAATGTAGATATAGTTATTAGTGACATTAATTCTCAGCAAAT TCACACCAAACTTTTTTATTTCAAGAGCTTGTGTTGCCAATTTGTCTGTTGGCACATAGGGGTTCATTTT TAGATATGACATGACAACAGTATTGATGGCATATATTAGATTCGCATACACTATTTTAGACTGGTGCTAT GATAGAGGTGCTTTAGCTAATGTTTATGAGATTGCAATCTGGCAAAATGACTATCCTTGGAGATCTGTTG GTATCTTAACTAGTTCTTAGATGACTACCACCTGATACCTTGACCTTAATTCTAATCTTAAAAATCCGTG TAACCATAACTCTGTTTTACTAATCCTAATTCTGTGCAGATAATGTCCAGAAATATCACAAAAGAGCTAC AAGTTGGTAATTTTAGGTGGAGCAGTTTAGATTTTCCCTGTACAAAAACACCATAGAATACAATAATGCT GGCCGCATTTTCAATACACACGATCAGCAAAACATATCATTTCTTTTACGTGGAAATTCACTGCATTGCA GATACGACAGTTTGGCTGATGGTCCATTTGCATATTAAGTGCACGCTGCTACTTTTTGCTTTGCTTCAGT ATACGTTTCCAATGGGATGTGCGCATTCAATCCATAAATTGTATGGCAGCGCCATTAAAATCCCCACATA TCTCAGAAAACTGAAATGAAGTGCTGCCTAGAAATTTAATTATGTATAGTGTGGGACTTGTACTTTCATT TTCTGAAAAAATATCATGATCTATTTTTTGACCAAAACTGACTGACATGACGGTTCAGATGAAAGCTGAT GATATGAGTCCACAATGAATTTCAATTAATCATTTGGTACATTATGTTAATCATGAACAATGGATGGAAA CCCTGTAAACTAGAATTCTTGATTAGTCTGGAGTTAAACCTAGGTTGATTCATTAGAATACCACCCAGGT ATTTCTTAAAATATAAGATGTGGAGTTAGCAGATAAATATTTGAATGAAAATTATTTAGATGTATAGTTT ATATTCTACCCCTGATTTCAATCAAGTTACTCAGACTGTTTATTGGTATGCTAGCCTTGCAATTTGGTTT CTCTCTTTCCAAAATCTGTAACTCTTTCAAAAATGTTTATTTAGATATACTCAATATCATTTATGGAAAT TATTTACCGGTATTCACTGATAATTGTGGTAGTATGGTTGTATAAATACCAAAGTAACAGCTGTAGCCTT TTTTTCCTAGAATTGTTTAAATTCTCAAGTTCATGTCAGGATCACTCTTTATTTACATTACTGACTGGTT CTGTGGCTAGCAATGCTAGCTGTGGCTCTTATAGTAATAGACATGCTTAGTTAAACTCATACATGGGTGA AAATTAGCTTTGAGATTTCAACCTTTGGAGCCGTGTCTTTCCCGCAGGAGTCTTGCAAGTGGCTTTTCAA TACCAATCTTCATATTTCATCCTTGACAAAATAATAGAGAATGATGGAAAGTTGCTTTGAAAAGATGCGC ATGGGGCCTTTACAGCAGGACTTTTGCTAGAAGATGCGGCACAGACTTTTCACAAATTGCTTTGTCTGGA AA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds