Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030980285.1 PREDICTED: Strongylocentrotus purpuratus inositol polyphosphate-4-phosphatase type I A (LOC579262), transcript variant X2, mRNA ACGACTCGTAATCAATCATACGCTCTGATCTTTTCAAAGCTCTAGCCAATTTAAATGTTATTAGTTTTTC TACTCGAGCTGTGTAGTATACGCCACCTTTGCTATGTTGTATGATCATTGATTGACACCATATGGGACAT TCCACTGATTGAAAGATGAATAGCAACCCTGCCATGAAATGATGCTACAAAAGATAGTCGGCTACTGACT GACAATACTATTGAAGCAGTATGATCAACAGCAGAGGTTCTGAAGGAGAAAGCATTTAGTGACATTAAAA ATGGAGACCTGCTATAAAGATATCATTTAAAGATTTAAAGATTACCTGAATGTATACTTCATGGATGCAA TCATAAACTCAATTTTGTTGAAGTACAGAAACAGAAACTTGTAAATTGATACTCGGCACTGCTCCTGAGT TATTGATGATACTTTCTCCGGTCCGTGAAGATGTAATCGTAGAAAGAGGAAATTGTTTGAAACCCAGGAA CTCTGCTACGCCAGCCTTTGGATTGCCCCTTGATCACGGATGTTACAGAGCACTGAAGACCGGGGATCCA CCTGGAGCTATTGGAGACTTAGTGGGATCCACATATCTCCCAAGATGCGCTTCAATCAGAAGGAGCTAGC AGGGGTCGGCATGGAGCCCTCCAAGTATTTCACCAAAGAGGGACCTCTCTACATGAAAGTCAATGCTGGT GGTTGGCGCAAGAAAGGTCTGGATTACAGTGAAAGATGGTGCAGACTACGAGGTAATCTTCTTTTCTTCT TCAAGGATCGTAACCTCCTCCCGGAGCCTCAAGGGGTCATCGTACTTGAGCAGTGCTTTATCAAAGAGGA ATATGCCGAGGTCAAACCACATGCCTTCTCTCTAGAATTTGTCGGAGAGGAACACAACCAGTACTTTGCT GCACACTCCACAGAACTTAGAGACGAGTGGGTAGCGGCGATACGCCTGGCAAGCTACGAGATGCTACGTG TACAGCTACAGAAGCTTCGCATCCAGATCTTAGCGCGCACAGGTCGTGACCCCATTAGTGAGGGTCAACC AGGGGTCATTGACCCTGGTAACCTCTCTGATGGGATGCAGAATGACCCAGTCCTGGAGATGTCGATATCC TGCAATCATCTCCCTATGAAATCAAATGGCGATGAACCTAGCGTGTTTGCAAGCATCAACTGTATGACGC CGCCTGATACAAGATGGTTAAACTGCGGTCAAACAGAGATCATTGATAAACAATCTAATCCATTCTTTGT ATCAACGGTAGTCTTTGAGACTAGTCGCAATATCGCTGTCATCACCAGGTTACGCGCTAATATTTATGCA GTGGAAGACAGGACAAACCAGTCGCATTGTGCTATAGGTCATGCCATCTGTTCCTTCAAAGACATCATCG CAGCTCCGGGTAACAAGCTTGTACTCAACATCATCGGTGCTGATGATAAGCCTTGCGGTGGCACCATCAG TCTGCTGCTATGGGAGCTTGATCAGTGTGTGTCTCCTGAAACTGAGAGAGGTTTTCAAGTAGTGACCCCG CCAGATCCACTCAGTAATATGATCATTGGAGTACCCCCATCACCCACCACTCTGCACCCACCTCGCTTAG GCACACTCCATACCCCATCTACTAGAGACTCCATCTCAAAGGGTCTGTATGGCTGTGTGTGTAATAAGAA GTATCGCTATCTCAACCCAGATGGAAAGATAGTACAGGTGGAAGAGATCATGGCGGAGAGCAAACTCTCG TTCTACATTCCACAGAAGATGTTAGAATTATATTTAGATGAGGAGAAGAGGAAGTTAAAAGAACTTTCAG TGTTTGCCTTGCCCTCAGAAGACTGGGATAGAATAGGTCGAGCTGTGATGGCTGAACATGTTACTATGAT AGAACAGTACACACAATCCTTGGATCAACTAAAGAAGATGCAGAAAAAGGAGCTTAGGTTATTCAAGAAG AGCACAGAGAAGACTGATAAGAGACTTGAGTTTGTACCTACCAATCTTCATCTTCAGAGATTGAGAGTTG AGGAGCAAGGCTCAAAAGGAGTTGTATATAACACCATCACCTTTGGAGCCCCCTGTGCACACACAATGAA GTTCAAACATGGAGGACTAAGAAGACTTTTCCAGCAGTATGCAGATGAACAAAGTAGACTTGTTGGCAAC AATCATTGCCTATCCTCCCAAGCAGCTGATGTGTTAACCAGAGTGTCTGAGCTGAGAGAGAAGGTTGATC AGTGCTGTAAAGACGTTAGCTTAGCTGCCAAGTACAAAGATGTCACCACCATGAAGCATATGACACAGGC TCTCATTGAACAGATTAACATCTTCTGCAGAGAGGTAACCTTACTCTTAGAGCAGTGTGTAGTCCCAGCA TTACAGAAGACCCATGGATCATACCAAGATGCTACTAAGGCTGAAGGCAAGTCAGATCGCAAGCATCATA AAAGTCACCATCATCCTGTTACCACCGACAATGGGAGCGCTGGTAATTCACGCAACAGCAGCATCAGTGT TTCATCACCACCCCAGAGGAGTAGCGTACTAAGCTCAGGTAGTGGATGTACAAGCCCCACTAGCCCTAGT ACTGGTGTGTCAAATGGGATCTATGAAGATTGGGAGATGAATGGAGTATGTTTACCTGGAAAATCATGTC CTAACAGAGAAGGTGTCCCATCATGGGATTGTATGTGCAAGAAGATTCTGGACTCTGTGAGCATGCTACA GCAAGTAGTTGAGATGTTACCTGAGGCTGCTAGTGCTGAGGAGAGAATGGTAGCAGTAGACCCTGGACTC CAGTCTCTCAATGAGGCTCTGATCAAGCTACAAGAACAAGCCAAGTTCAGTGTGGGCTTCCAGAGATTAC AGGAGGAATACAAAAACCTTGATTTTTTGCAGAATCTACAGAACAGAAGAGACCTTGTATTTTCCCAAGT GATCACATCTCTGATTGTTGGTGTAGTGACACAGCTCAAAGAGAACATCAACAACAGAGGTTACCTCAAA CAGCTCTGTAAACTAGGATTCTTAGCCCACTTTGAGAGTCTACTCAGTACATATGGTGATGAGATGGGGA TGCTGGAAGACATGTCAGCATCAATCAAAGATCTTCAAGGAGTAACATTCAAGTTGATTCCAAGCAAATC AGAAGATGATAAACCTATCCTCTGTGGAAGCAGATGCAGCATAGTAGTAGAAGTACCGCTGGATGTGAAC ACCTTGACCAAGCTACCAGATGACCTCAGTAGAGGTCAGCCCATCAAGGTCACTCCCATTCTCTTCACTG TAGGGATCAATGAAGAACAGTCACTTGCTGAATTGTTTGGAGACACATCATTACAGGAAGCTATCAACAA GGAGAACATGCACAAAATAGATGTCTACTTTGACAGATACTTGAGATTAATACAACATGAAGATCGTCCT CATTCGACGAGTACATTGAGTATAGAGCTGCTGATGACAAGCTTGAGGCATCATGTACAGTCTAAGAGAC AGAAGAATGTCGAGATACTACACATCAGCAGACAGTTGGTGAGACGAATCAATGGTATCCGTTTCATGAG CTGTAAGAGTGCCAAGGATAGGACAGGCATGTCTGTTACGTTAGAACAATGTCAACTACTTCAAGATGAA CACAAGATGGAGCCCCATATGTTTGTACATCTACTCAACACCATGCGCAGTGAGGGAACAAGGAGAGACA ACTCGAGAAAGAACACTGGAATCAACAAGTACGCATTCAACAAGATGCAGTTAAGAGCGTTCCCTAAACT ATACAGACCACCAGAGGGCACATATGGTAAAACGGTTACAACATAGTCCCTAAACTATACAGACCACCAG AGGGCACGTATGGTAAAACGGTTACAACATAGTCCCTAAACTATACAGACCATCAGAGGGCACGTATGGT AAAACGGTTACAACATAGTCCCTAAACTATACAGACCACCAGAGGGCATGTATGGTAAAACGGTTACAAC ATAGTCCCTAAACTATACAGACCACCAGAGGGCACGTATGGTAAAACGGTTACAACATAGTCCCTAAACT ATACAGACCATCAGAGGGCACGTTTGGTAAAACGGTTACAACATAGTCCCTAAACTATACAGACCACCAG AGGGCATGTATGGTAAAACGGTTACAACATAGTCCCTAAAACTATACAGACCACCAGAGGGCACATATGG TAAAACGGTTACAACATAGTCCCTAAACTATACAGACCACCAGAGGGCATGTATGGTAAAACGGTTACTG AATGATATAGTTCTGAATGACATTGGTAGTACCAAACAGTGTAGAAGTATATACTGCACTATGTTAATGG ATTTATAGGCAATGTAGCTGGATACATGTATGAGATATCTGTGCATGAAGGCAACTTAGTTGGAGTTAGA AAGTCATTCAGGGAGATCAGTTCACCTGGGGGCCCATTTCACAAAGCTTTTTTCAATGACAAATGACAAA AATCAGTGACACAATCTGCTGATATTCAATCAGAAGCAAGGATTTCAGTAGCTTATAACAAAAACTGTCA TTTGTCACTGGTGACAAGTTTTGTGAAACGTCCCCCTGGTGTCACTACATGTAGCCAGAGATCAACTGTG TAGCTGTAGAAGACTTCTTGCACTGTTTGATTTGACAGATGGCTGGGTATATGAAGCAAGGTGGTAGCAG ATGAATGCCATGACAGTGTGAAAGGGAATAATGGGATTGGTTGAACAGGTTTTATTTACACTATTCAACA AGAGGAAAAAGACGGATACTGCCATTCAGTAGCCCCACCGTGCCAATCATTACCACCAATACCAACATTC TACATTTGTCAGATTTGTTGGAATGATGGTAGAATTGTAAACAAACAGATGTTATAAAATTCTTGTTGAA CATCTACCTGGCCACTATAGCAGTATTTTTATAGTACAATTGAAGACGTTGTAACATGTTCTTAATAATG AAAGAAATGTATACTACCATCATTATTGTCATTGATCTCTGCCATTCATGCACAGAATTTTAGTATATGT GTGGTCTTATGATTTGGTCTCATTTCAAGATTGCTTAAGAATGAAAATTAAACTTATCTAGTTTACTAGA CATTTCACTCCCATCTGAAATGCTAGTGGTTGCATTGGGTTAAATAAAAAAATAGCAAAGCTGCAGGGGC CTAATCTATGACTGGAATCTGTTGAATTATGCATCTCAAATATTCAGATCACACTACACGTATATAACTG ACTGGTACCATGTCTTTTAGCTCTAAGAATATGGACCTCGTTTAATAGTTTTGCAATCATGCCTTCTCAG GAATCATTTGATTTTCTGTCATATAAAACTGCAGAAGAAACATTTTACTCAGTTATGAATCTCAACTTCA CTAAATATGTGTTATGTGATAACAATATGTGATAGGAGTTTTGTGGTGCTTTCTTTGTGTGATTTGTGTA GTAGTGAAAATAAGGAATACTTGTATTGTAGGTACCCAGTTTGACAGTAATTTATGACTGCAATGTGCAA GGCTGAAAGGGAGATATATATATATATATATAGTTTATAAACTATTTCATTATATTTTTGTAATAACACG TACCATTAGGATAATTCACCAAAGTTAGAAGCATGTGATAGAATGTGGTTCCATACTACATTAATTAAAT ATCTCTGTTTTGTGAGAATAAGTATTCAAGATATAACTAAAGATTTGCACTAAACTGTTTGTATAAGCTA GACCTGTGAGGGTTGAACAACTCTGGAATCACTGCATTTTCATGATTTTCTATCCTTGTATTTAGCAGAA TAACTGGTTCTCTGAGCTAATGAATATTTGTTTGATTCATTGTTTATTGTTCCCACTGAAAATAATAAAC ATGTAGCAAGTATTTTTTAATAATTTCAATACCAAGATGGGGCAAAGTGAGTGACGCTTCAAAGTAAACT CATGATAATAATAATAATAATAGCTAGTTCTTATATAGCGCTTTTCAAGACCGAAGGCCCTCTCTTGTAG TCATGGCGATGATGATGATGATCTTGTTAGTTCATGAATGGGGATATTTCCTCTTTTCTTTTGTGTGTGT CATGCATTGTATTAAACTGTTGTTTGAATTTGACTTTGGAGATTTTTCACAGAGCTCATGTGATGTAATC AAAGTCGAATGTGAATTTGCCCATATCAAACATACCCAGATCAAACTGTTTTTTAAGTAAAAGATGAAAG GAAAAAAATGATGGTTGTCTTTTAAAGCCCCACTGCACTACGTATAGCTACTTGCGCCCTCTATATAGCA AACAATGCTTAATCGGTGACCATTGGTCTCCCATTATCCCCTGTTTTCTTATGTGAATTGAGAGCTGATT TGATGAGATAACCACCTGTCAGTGACTATGCAGGGAGGTCTAATCCCTCCTGGCCAAACTACTGCAGTGG GGCTTTAACATGGAGAGAACGGCAGGTTCTTTTTCATTGTTTCCTTGAAACACCTATTTGTTTTTTTTCC CGTTTCTATTTCTTTCTATACTTTGTATTCCATTTCAATTATGTTTATGATGAGAACCTTAACTACGAAA TGAACTGTAAACCGTCTAATCCTTTCCTATATATCTTTTATCCAAGCAACAGGAATATAAATGAGTGCTT TAATTGAATTATGATAAACGAGAATCTCCTGTAAAGGACCATCTTCTAATAAAATTAAACCATTTTGTAC TGTAGCCTTTCTTAATTCTATTTTTCTTCCCTTTTTTTTTTGTGGTTTAAACAAATGCTTATGCAACTCA TGAAATAGATAAGAAATCCTTGAGTAATTTTTGTAACATGTATGTCTTTTTAATCATTAACAATCAAACA GCAAAGGCTTGCTATAAGAACGATTCTTATGCAACTCATGAAATAAATAAGAAATCCTTGAGTTAAATTT GTACATGTATGACTTTTTAATCATTAACAATCAAACAGCAAAGGCTTGCTATAAGAACGATACTTATGCA ACTCATGAAATGAATAAGAAATCCTTGAGTAATTTTTGTAACATGTATGTCTTTTTAATCATTAACAATC AAACAGCAAAGGCTTGCTATAAGAACGATACTTATGCAACTCATGAAATGAATAAGAAATCCTTGAGTTA AATTTGTACATGTATGACTTTTTAAACATCAATATTGTATTTATATACATGTATCTTAGCATATGAGTAT TGTGACATGTTGTGTACAGACAGATTTTAGTTCCAACATGAATCTCAAATGTTTGTACCTTTGTACATAT CTTATTTATGATGTATATTCTTTAGTACAAAAAGATAGTCCAATTATACTTGATTACTGCATACTATATA CTTGTACAATGTACATTTCGGAAGAACTCTGATAATATATACTGTTTCTTGTAAATAGTCTGGTCTTTTA TTTTTTTCAATTCCTTGTTTCTTTGATGCTATCAGAGAAGAGAACCATATGCATGGAGGGCTAAAACCTT TCAAAGATGTATTTTTCATCTGAAGTTATTGATATACGTTGTATTTGCCTTGATGTACTTGTTCTCTATA AAGGAACGTAACAATGCTTGGATGTATAAATTGCTAAGGATCGATTGAAATATTTTGTGTATGTTAACTC CTGTTCAATAATAGCCATATATCAGAATGAAGATTGATTTAAAAAAAAACAATTAATAAAATTAATAAAC TGATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds