Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT119210.1 TSA: Strongylocentrotus purpuratus WHL22.33162.0 mRNA sequence GCCCTAGGACTGTACGCCTTCACTGCAGAAGACAGCTGGCCTATTCTGCTGGCTTTGATTGGAGTGATGA GTGCCTTCCAGCTGATCCTCCTACCATTCTGTCCAGAGAGTCCAAGATGGCTACTCCTCAACAAGAACAA AGAAGAGAAGACCAGACAAGCTCTGGTAAGACTACGAGGCTCGGATGATGTCGAAGAAGAGATTCAGGAG ATCAGGGAGGAGGGAACGAAAGATGTGGAAGTTGAGGAGAAGGTTGGAATCGTGGACGTGATAACCCTCA AGGACCCAAGTTGGAAGATGCCTCTGCTCATCTGTATGATTCTTCAGGGAGGACAACAGCTCTCTGGTAT CAATGCTGTTCTCTTCTATGCCACAGAAATCTACCGCCAGACTGGTATGGGAGCAGAGGAGGTTGCTTAC GCCACCATCGGAACAGGTGCCATCAACGTCGTCATGACGATTATCTCGGTGTACATGGTTGAGCGTGCTG GACGTCGTATTCTAACGGTCGTCCCATTCGGTCTAATGGCCATATGTTTAGCTCTCCTCACAGTCAGTTT AAATCTCCAGCCTACTTTTGATTGGATGAAATGGTTGTCTCTCATCTTCATCTATGCCTACATTGTATCA TTCGCTGTTGGACCAGGTCCTGTACCATTTGTGATTGTTCCTGAGTTGTGGACCCAGGGACCACGCCCTG CTGCCATGAGTATCGCTATCCAGACCAACTGGTGGTGTAACTTCCTTGTTGGTCTTACCTTCCCCTTTAT TCAGGTGAGTGTTCAGTGCTTGGAACCATTGGTGGGGTGGTCAGGGTGGTAGGGGTAAGGTTGTAAGTTA GTAGGGGGTGGGGGTAGAGGAACACAATGACCCTGCCCTGCTGCTTTGAGTATTGCCATCCAGACGAACT GGTGGTGTAACTTCCTTGTTGGTCTCACCTTCCCCTTTATTCAGGCTACCGTAGGGGCATACTCGTTCTT GGTCTTCATGTTCTTTGTGATCTTGACGACCATCTTCTCCTACTTCTACGTTCCCGAGACTAAGAACAGG ACGTTCGACGACATCATGGATGGCTTCAGGAAGGGAGATAAGTCGGGAAAGAAGTCGAAGGGTGGCGATT ACGAACTCCAAGACAACGCCAACAAGGCATGATGACGATCACCACACAACAGTACCGTACCGTATGTAGT GTGTAGTCTAAGAATCTGAAGTGTATATTACTACTCTATCTTCTAGTACAGTCCAACGTGTCATAATGCC CACCTCTATGTGACGGCCATCTCTATGTTCATTTGTAGTAGCCACCTATCTGTAGTAGCCACTTAAAGCC ACACTGTACTACTTGTAGCTACTTGCTCCCTCTATATAGCAAACAATGCCTAATTGGTGACCATTGGTCC CCCATGATCCTCTTTTTCTTATGTTAATTGAGAGCTGAGTTGATAAGATTAGCCACCTGTCAGTGACCTT GCTGGGTGGTCTTATCCGTCCTTGTCAAACTAGTAAAGATGGCCTTTAAGTTGTTTCTTTCCAGAGAGCT AGAAGATATAAGATAAAAAACTTAACTCAGTGGTCACTTGTGCCCCCTCAGAGAAACTGATTTATTTACA CCCTGTCTATAGAGGTCACATGGGTGGCCTTAGTAGACAGGTTTGACTGTAAGAACATGTACATGTATGC AGCAAAGGGAATTTCTTTTAACCAAATGTTTGATAAGAGGCACAAGGTCATTGTTTACTTTGTGCCAGAA TTGAAAGATTCTGGGATCAATATCCCAAGGCTCTGTAATGATCAAAACCAGCGTGGTATGTTAAATTTTT ATTGAATATGCCTCATTTTTTAGACCCTTGTCCCTTGGACAGGAGGTAAAGTCATAAGTCCCTTTTCTAC GTACAATATACATGTAAACATGTATTTTTTTCTTCAAACCTGAATCATTGAAATCATTGAATAATCAACA TCAATGTCTGTGAATGGGACTAGAACCACTTGAGGTGGCTAGTCTTCAAAAGCTTTTTATATCAGAGATA TGATATATGTTCATCTAGAAAATGTGCCTGTTTGGCAGCCTGCATTTGATGTCTTCAACAATATGGAGAG GCTCTACCTAAGCTGGCCTTAAAGTTACCATGAAAGTATTGATGTACATTTTTCACTAGGCATTTGAACG TGGAGTTGGCCATCCATTTATATGTACCATACACTGTAGTCTCTTGTAGTAGACTTTGACTGCACAAAGC TGAGAAGGCCTCAGAACCACACTACATATTGATATACGGCTGAAATCTAGTTGTTTATGTGAAGAGATTA TATATATATATATATATATTGAGGGATGAGAAACAGAAGGACTTTAGGAACTAAGTGAGTTAGTTTGTGT ACCTGATATTCATAACAACCTTCTGCTTCTCACCCTAGGGTCATATGTTGTGTTCTGAAAGACATAAGGG CGTTAATCCATCTTTTCAACCAAGATTTGTGCCCTTATGGTTCTCAGCAGATGACACTGTCCCGTAAATC GACCATGTATAAAAGCTGGAGCCAGAAGGACGTTAACTCTGTAAAGAAGTGTATGAGATAACGCCCTTCT AGCTATCGGCAGACAATGTGTAAAAACTTCTTGGAAGTTATGAATGGCTTGTTATCATTGCCACCAAAAA CATTTAAATAAATAAATAAAAAAAATAAAAAAATGAATTAAAAAAATGAAATGCTGCAGATTAAAAAGCA AAAATTGAAAATATGGAAATAAAAAATAAAATGAAAATAATGAATAAAAATCTGCACTTAGTGAATGGCA CCAACATACCTTTGATGTGATATATTTTTTCACCAGTTTTTCATGAGTTGATTGTTTGAAGTTGACTGTG TTTTACCTTAATGTTCATTCTGTAGCTGATATAGTTACAACACAGCTAAATGTAAGAGGAAGATTTTGGA TTAATTTGGATCATTCGTCATAAGATCGAGCCAGGTTTAGGAAGTTTTTGTTCACTCATGAACCTTGGAA ATATTGAGCTATATGATATAGTCTTAGTGAGCACGATTTAGATAGTCCTTCAAAGAACTATTCGGTATAT AACCAGATCAAAGAAACACGATGTTAATATCGCCAGATGTTATGTCGGAGATGATTTGTATTGACGGATG ATTGCGAAAGATAATAAGCTTTGAAAGAGAGACAAACAGGGTAGTACAGTGTTATTTGTAAAGTATTTGA TTCAAAGAATTGTGCAAATAATTTCTATCTTTGTACATTATATGTATGTGTGTCAAATCATATTTTTCTG AGCATGAGCATGCAGATCCATATAATATATATATATATATTTTAGAGAAGCAACAATTTGGATTGTTTTC AGTTTGGCAATGTAGATTCAATGCATGGTCGGTCTGTCTTTTTCTTCATTTTTGATTTTTGATTTTTGAT TTGTCTGTTCCACTTATGTTAAATGATAGAGGCAAGTCATGCAAGATAGTATATTGAAAGTTTCCATCTG GAGGGTGAATGCAAAGATGCATCTAAATCGAGATGTTAGGATTTTAACTTTGAATATGTCTCATAACCAA TTAGATATATTGAAATAAGAACAAAAATTGGACAAAGTTATGTAAATCTGTTTTAATTTGGTTTAATGTA GCTTAGATGTAGAGCTACCTCACAGTGAAAGTGCCATAGGTGGTTACTACACTACATGGTTAGTGTCATA TATTTAGGAAGGCTTCAACTAATAGGATATATTTTCTATCGGCTTTTTTTTTAGAGAGAGGACACAAAAG CATGTGTCTATAATGAGCTTCCTTAGATGAAATAAGTCCAAAAGTATAAGATGTAAAATTGGAAAGATAT CAGAATCATTCCTTTGACAGCTAGATGTACAGGGTAGTCAATATAACATCAATTCTTATCTGCCACTTAA ACAAAGAGGAAATATATATTAAAACAACAAGTGCCTTCAAATGGTGTATTTCTATACTTGTAGAGCACTC TAGGAATAAAGCATTAGCTAGCAAGCAAGCCTTCTACAACTTTACTTTCAGACTTATTGAAGCACCATGC TTTATTTTCAGAAAAGAGTCCAATTAGAGTTATTTTTTGAGCTGAAGCTACAAGATTTGAATAATTTTGA ATAATTCTGAAGCTTTGACAAGATACATTGGATAAAAATGAACCACTTGATATAATTGGGAGATTGTTAT ACTCCATTTACAAAGGGGATGTCATGTAGATTATTCTTTCTATCCTAAAGGGTTGAGGTTGAATTAATGC ACCACAAATAGGCAATAGCTAATTATTGTATGATGAATTAGAAATGAAATCTTTACATATCACTTATAGG GTAATGCGAATATGAGATCAAGCATTAAAAATATAAAGGTGCTACATAGAACATGTGATATAATCATATT CATCTCAAGTAGTTGAGAATGTAATGTTAAAAGTAGGATTATTCACCTCGTCTCTTAGGAGAGAATATTG TTCTTTTATTGTTACCGGTAATCTTTAAAGTTTTCATGAAATTTTTGCCAAAAAATATTCGAAGTATTAT GAAGTGAAATATCTTTGTTTGTTAAACGAAAAAAGGTTATTTTCATGTTAAAATCAGTATTAAAACTTTA GATCTCGTTATCTTTTAGAGATTTGGTATGCCAAACAAAATCAAGTTATAAATGGACACCGTATTTAAGA ACCAAAGAATTTGCTGACAGCATTGCAGCTTAATTAACATGCCAGCTGATACAGCACCAGTGCAGTTTTG ATAAATATAAATCTGTTTTTAGTTCATAAATGAACTCAATAACAGGAGCCTTTTGATCATGATTTCTTTT ATACCAGTCATGAACCTTTTACTTATGTCAGCTGATTAATTCGAGTATCTTTTGATAGATCTGTAGCTCT GCTTTTTCCCTGTATTTTTCTTTGACGGAGAGAATTCAACACAACAATGTTGAGGGTGAAATGTATTACG AAATGAATTTATTTCTTTGTAATTGTTCAGTATCTCATTTATGTGAATAAATGCACTTTTTTACAATGCT GAAATGAAAATTGTGAAAGGGGGGCAGATCTTTGATTGTAGTTAGTAGATGTAGTATTAGTACAGTTGTA TTTCAGAAGAAATTTTGAAGAGCTGGAATTCAGCCTGTTGTAAATTGTGTTGTAAATTATGTCATAATTC TTTGTTAGATGTTTATAGATTGTAATTAGATGAAGCTGCTTTCTAGTGATGAAATTTTTTTTTTCTGGAG AAAAGCTTTATTATCAGGTATTCTTAAACATGTTGTACATTAAATTCTGATTAATATAAGCATACTATGT GATTCTAAAAATAAATAAGTTTAATAACAGCTATATTGATATTGCGTACACATATGTATCCTCAACCGGG GATGCTCATGGCGCGTACAAAGTACTATTATTACCCTGACTTAAGTCCAGCTGTCCTAAGGTGCTGACAG CATTCAAGGAATATAAATTCCTATCAGGTACCCACAAAGACCATATATTTTAAAGGAAGTTATAATTTTG GTCAGATTATGCGAGGTTCGATCGACTTGGAAAGCCAAGTTCTGGTATTGCTGTTTGCTTTATATTGATT TGACTTTATATTTCTTTTTTTTTGGTTCGGAAGCAATTTGATTTCATATGCAGTGCCGTTTTTAAAAATA ATTATTGTGTTGATTTCTCATTCATGCATTCCAGGTTTAGAAAATAGCCTGTTTATTAAACATGCTTGCA GTTGGACTAAGATTATAATTATCATGTAGATTCTCCAATTATTCTCCAATGGAAAGTAATATGAAGTGAC ATTTGTTGAATATGACATTTTTATAATGGGATCAAATTTAATGCATAAATCTTTCTTAATTGCCATGTTA CCAATTATATTGTTCACCTGTTATAAATAATTGTAATGCAATAGTCAGAATGCAAACTGCATATATTACG TGTTGTTAGGTTAGGTAGGGCAAGCCATAAAGTTTGTCCTACCTAGCAACAAGTAATGTTTGTCCTACCT AGCAACAATAATGTATGCATTTTGAATTCTGACTTATGGTTACATTTATTCGTAACAGGTGAATGAAATA ATTTGTAACGAGGCATTCAACAAAGATTTGTGCATTAAATTTGATTTATTTATTGGTTTATTGTTTATTA CGCATAGCTGTTGGCAGTACTGCAATTTGGTTCTCACTATATAGTTACTATAGAGGGAGTTCAAATCTTG TAGTAGTACAAAAACAGGATTGATAATTACTGTAAAACTGAAGTCAATTTGTTGGTAGGCCTTTGAACAA AGAGCAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds