Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041599576.1 PREDICTED: Lytechinus variegatus serine/arginine repetitive matrix protein 2-like (LOC121408196), transcript variant X2, mRNA CGACGATATTAGCTGACAAAACAAGACAGACGGCGACGACGCGACGGTGGCAGCCCGAAAAAGCCACATT ATCTTTCACGAAAATAAGGTTTTAGCATCCTAGCCTAGCCAAACGTGGCACCATGTATAACGGGGTCGGT CTAACGACAGCCCGTGGTAGCGGCACCAATGGGTACGTCCAGCGAAACTTTGCCTTGGTGCGCAACCAGA AGCAGAAGGTGGACTACAAGTCTGAGGAAGAGATCAAGAAGGCAGAGGCACTCCTCTACAGACCTCCTAA CCAGGAGATCCTGGCCCATAAGAGGAAGCGACAGGTGGAACTCAAGTGCACGGAGATGAAGGAAGTCATG GAGGAACAAGGAACGTACAGCAAAGAGGAGATTGAAAAGAAAGTGAGTGCTTTTCGAAAGATGTTGTTTG ACAAGGAGGGAATCTCTGACCTCGCAGGCAAAGCAACTCCTGAAAGGGCTAGTTTGACAGACACACATGA GATAGCAGAAGCTAAAGAGAAACAGAATGCCAAACTGAGAGAAGCTTTTGGTATCAAGGATGGTTATGTT GATGGCAGCTCATTTGACCCAGAGAGAAGGGCAAAAGAAGCAGAAGCCAAAGCTATGGCTGAGAAGAAAT ATGAAATTTTGAGAGACCCAAGTCCATCACCATCGCCACCTCCAAAGAAGAAGAAAAAGAAAAGCGGACA CAGAAGCCATTCAGAAAGTCGGTCACCAGCAAGAAAAGAGAAGAAGAAAAAGTCACACAAGTCTAAGCAT TCGAGATCTGGAAAGAAGAAAAAGAGTAAAAAACACAGGAAGGACAAGAAGAGCAGTCACAAGAGTAAGG ACAAGTCTGATAAACACAGAAGCAGCAAGAGAAGCCATCGCCATCGGTCTAGAGACGACAGTGAATCAGA ATCAGGTCTAGAGTCAGCAGGGTCCTCACCGGAGAGAAGTCGTCGTTCACATCACTCTCGCTCTCCAGAT TCTAAGAGTCACAAGAAGGAGGAGAATGGCAAAAGCAGCAAGAAAAGAAGATCCTACTCCTCCGATTCTG ACCGGTCAAGGAGCTACTCGCGCTCCCCAGAGAGGAGGTCGCGTAGAAGGTCAAGGTCTAGAAGTAGAAG GTCTCGCAGCTACTCCAAGGAGCATCGGCGCTCGAGGTCCCGTTCTCTCAGTTACTCCCCATATGAGCGT CGCAAGTCGAGAAGCAAGAGCCCTTCTTCCAAGACCAAGGAGAAAAACTTCTCACCAATCCGTAAACGCC GGGATTCCCCTAGCTTTTTAGACAGGAGGAGAATCACAAGTGCGAGAAAGTTGCCGGTTCCGTACGACAG GCCCGCAGCCAGCCCAGCACACTCGGACTCCTCACCCTACAGCCACCATGGGGATCATAGGTCATACAGC AGGTCACCCTCAAGATCACGTGACAAATCACATGATAACAGATCACATGATAAGTCCCCGGGAGGGACAT CAGTTCGGTGACTGGCAGTTATGATTGGTCAAGAAGGGAAAAGTTAGCCGGTAAATTCAAACTGAAAAAA AAATGTTTAGAAATGAAATATCGTGCTTTGTTTACTATGCTAGTAAACATGCAGCGGAAGTGAAATAGAT TATTTAACCAAAAATAAATTTTTGGCAATACGAGTTATATGACAGTGCAATTTAGAACCTTTATGTACAT GGTGGATCTATTCCAGTTGTATATAAATCATAGGGTCAAAAGAATCTGTGTGTGAATTTCTTGTACAGGA TGATAATGACATTTTCCAGTCATTTAAACGTTAAACCTTGTGTATTATAAACTAGTTTTGCTTTGATTTA GTATTTACTTTGCAAAACCTAAGATTTAAAGGGCTTTATTCAATTCATTTAAACTCGACCTCTGCTCAAA GATAGTGTTTGAAATAGGAATCAAATATATCCCGGGTTAGTGTTTAACGAGAATATTCATAGATAAAATT TCAAATTACTGACATCTTTAACTGTTACTTTGCATACAATGCAATATGGTGTTTGCAAACTTCAACTTTG AAGCAGTGATATGATTCCCCGGTCTGCTTTTGTTAAGGCCTAATCGAGTTGTAATTCTAGTAGTAATTAT AGAATGGTGGCTTAAGCACGTACATTGATGATAATTTGGTACATTGTCTAATATATTCCTCAAGATGTGT TTTAATAAAAACAATCTTTGCAGTGGAAACTGGACATTCCATTCTTCATTCTTATTTTCACCACTTTCAT TGTGACAAGTTTAATAATATGGTGACAAGATAAATGCTTTCCAGATTGAAAAAAAAATCTTAAAAGAGTT CAATAATTCCATTCATGACCAGTCATAACTGCCTAGCTTGCCAGGGGATGATTCACTAACAATTGAAATC AATATTAAGTCGAATAGGAGCGATAACATCAATTCAAGATATGTCTACAGCCATTTCAAATTTGATTTCA TTTGTGAATGAGCCATCCCCCTGATTTTCTCGGGAACGTGTAATATTAATGCTGTGTAATATATTGCTTA TATCTCGGTTTGATTTTGCTTTCTTTAAGAGTACCAGGATACATTCATACAGAAGGATAAACATTCTCTT TACTGTATATATATTTTATCATCAGTTCTCACGAATTTGAATACTGATTATTTATTCTTCCATTACTTGT TTGTGTCAGTGTTCAGTAAAATGAGAAACACAATCAACCAATTGATCGATATCAATCACAAGTCTGAAAC TATTCACTTCGAGTTAAAATCGATTGCTAGATGAATAAATGGGACACGCGTCAGTCATCTGTTGAACCCT TTGTTGGTTACCTTTAAGCACTGTAATGTATGCCTTAACTTTGTAAGAGAGTCAAAACTCATTGATATAA AATATGCATTTGTAGGAGTCCTTTCTGTGTGCTGTGGCTTTGTACTATTTAGTATTGTATTTTCCTGCTT TTGAAGGAATTGTACATAGTTGTATATAAAGAAGAAATTTGAGAAACCTTAAAACTTGTGTGTGGCTCAA AACTTTTGAAGCTAAGAAGTTAAAGGGGAATCCAGCCTTGGTCATTAAATGTTGTGTTAGAAAGGAGAAA AATAGATAAAACATAATTGTGAAAGTTTGAAATTAATCAGCCAAGCAATCAGAAAGTTATGTCTGTTTTA AATTTGAGATCCCTAAGCTAGGAGTACATGGAAGAGTAGTCCTTGCATTACATCACTATGAAATCACATG TGCGGCCAATTTGATGTCTTCATGGGTATAGTGATTACCAATAATAACAACTTTTAAAAAATTCATAAAT TTCTTATTGTTTGTCAGATGTTCAAACTTTTCACCTATCAACTTGTCTGATTTTCCTTTTTCCTTAAAAA ACAAGCTTTTATTTGGGTTGGATTCCCCTTTAAGTCTTCTAGAACCCCAAGTAATGTGAAATCACGTCAT ATTAAGAATTTATGTATCCTTTACACATGCCATTGTGAAAAATGTTATTTTTTTTATCTGCATGTAGAAA AGTGCAAAGTGGTACTTTATACTCGTTGCCTGCAACAAACGTGGATTGTGCCAAGTTTAGAATATATGTG CGAAATGACGTGAATTTCCCCTTTACGGGAAGTTCAGTTAATATGTGCTCATTCGTACCACTACCCTTCT TTTTATTGTAGTTAATTTCATATCATGTCAGCCTTTAAGAATAATATTGATATATTGACTAATTTTTCTA AAATGATTTGCAGGTCATCATTGCAAGTTTTGAAATTAAGGAAATATTATATTAAGAGTTGAAAAAGAAC TACCAAAACCACAATTTTGATCAGTATATGTGTTGCCCCATTTACAATGGAGTTTTTAATTGCACATTTT CCCTAAGTTTTTATCCAGGGATGTTATCCATGATTGTCTTTAGAAAAGAAAATTTGTGAAAACATTGGTA AACAACTTGCCTATTTCAATAGATCAAGATATCCTACTTTGTATTGTGAATGTTACCTGATCATGCCTTT CTATTTTATCTCCTTCTTTTCCCCACCATAACTCTTTCAACCTAATAGTCCTCATCAGGATTGATCATTG GGTGAACCTTGTACCCATTCATGTTGCTATCAATATCAAGAAAAGAATATATGTACTGATCTTAATAGTG TCAGAGAGAAGTTTGCTTGTTTTGTCACATTTATTGTAACAGTGTAGTAGGTTTTCATGGATCATGTATC TTTCTTGGGCAAATGTTGGTCCTTAAAAGGACCACCCCAACTGGACTTTTCGACAAGTGTGTTCTTTTCG TCTTCAGGAGAATGAGCAAAGTATGTAAAAGCAGGTCTTATATACTGTGTCAAAGTACCATATGCATGGT GCCTTGAGGGGTACATGTCTCTGATTGGCTGGATAAGTCACATGACATCCACATATGCGGACGTGGGTGC CAGCACACAAATTGGGCACGCGTAACAGCGAAACATGAAATGCTGCTATTATCATTGCCGCAAAAATGCT TGAATGACAAAGCCGCCAATTGTGCCTGTATCACTGTAAAGCTCACACATGTGTGAAATGTCACAAATTA TTTAGCGTCTCCATTATGTGTGTATGGGGAGAGCATGTGGATTTTTTTTGTCTAAACAAAATGGCAAATA GATCTCTCTTTTTTTTCAATTTAGTTTTGTGAATCTTTTTGAAATGCTCAATTGTAAGAAGGGAATGTTT CACAAAGAGTTAAATGTGACTTTAAAGTTATACTTAAACACCAACATGTATATAGAATAAAATGCATAAC CACATCGATGACGACGAATATGCAGATATTGTGCATCACCCATGCATGATCTAGACAGAGGTGATGCATT ATATTGCACACACACAACTGGGAATGTAGGTGCATTTTTTTAGTTGCATTTTAATCTCTGTGAAACATCC TCAGATCTTATGCACTAATTCATGACTCCCAATTCAAATGCAATTATAGCCATCATGTGGAAATGAAATC TCACATGTAATGAATCAGTGGGGTAAAAATTCTGTAAGGCATGCAAGTACTGACATAAGCATTTTGGCTG TATGGTACCTATTTCCTCCTGTGCTGTTGGGGTTACATGATCTAACAAGTATTTTCTGTTGTATTCATTT GCTAGTGGACAGAAGAGATGAAATAAGAAGATACTGTAAATGTACATATGAATAAAGTAAAAACGACCAT TCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds