Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT109357.1 TSA: Strongylocentrotus purpuratus WHL22.438976.0 mRNA sequence GCCAATGTCCGGTGTCTTTCAATGTCTTTGCACATAGATGTTTCAAGTCTGATAATATAAATACACGGAT GGGCCCAATTTACAGCTTTTCAGTCAGCAATTGTAGCAATGGGCGACTCATGGGACGACCTTCCGCTTGG TCTTTAAACTGAGAAGCTTTGAGGGGGCAGGCAGGCAGCGAGGTATCATCAGGGTATAGCTAGCTGCGAG TGCGAGCCAATAGATTCCTTGGTAGCAGGGGTGGTCTGCGCGCATCATTCATACGAACTTTTCACTCAGG CTAAGGCATCCATCAACGCCACAACAACGCCTTTGAGGCTTCATCATATTTTCTACTTTTAAGGTACCAT TTAGCATCAGTAGGAAGCAACAAAGTACATCCAATATGGCGGTAAAATTACTTTTAATAAGCCTTTTTGT GGCCACCTGTATTCAGGTTTCATTGTCTTCGCTGTCAATGACGGCCGTTTCGAGCATGACGCTTCCTTGG AACATCGTACCAAGAGGAGGAGGTAGGACGGAACCCCAATATGGTCTAAACAGAGGTGCGGCCGAGAAGA CTGCATTAGACGTAGATAACATGGTCGCCTACACTGGAGGGCATAACCTCTTGCATGTTATCAACTTCAC CGACGTCGTTAGACCCAGGATCGTGAGGTCGTTACGCGTTCTAGACCCTATCATAGACATCGCAGAATGT GGCAACCTGGTAGCCTTCACGAGTCGACCTAGGCGAAGTCGCACTGATCCAGGCATGGTACACATCTACC AGAAGTACCCGGTCTTCGGCAGCCTGTGTAACTTAACAGTTGGAAGCAACCCTAAGAGTCTGAAATTCGA CTACAAGTGCGACACCATCATCATCGCCAACGAGGGACCAGCGGCAGAGAACGTGGAGCAGGAGATGTTT GTGAACCCAGAAGGCACCGTCAGTGTGGTACGCATTAACAACACATTCGTCAACCCTGCCTTGTCCATGT GTCAACCTATGCCGTACGGATCGGACGTCAGGCACATTGACTTCCGACTCTTCAACGATCCTGCACTAGC ACCTCTGATGGAACAGCAGTTTATCCGAAACCCATACAAAGGTCAGATGGATGGAGAGCAACATACATTC TCTATGAACGTTGAACCTGAATATGTCACGCTTGATCCATGGCAACCAACAGCTTGGGTCACCCTTCAGG AAAATAATGCTATTGCCGAGGTATGGTACGAAAACATGACTGCCATCATTCATCCTCTAGGACTCAAGAA CTGGACCAATTATGGCATCGATGCCAGCACTATGGACGCTAAGACAAGACAAAATGAACCAAGGCGAGGA ATCAAGTTTAATCGTTATCCGATCGAAAGCTTACTTCAAGCAGATGCCGTTGAAATGATGGATATTAACG GTGAGGTGTTCCTAATCACAGCCAATGAGGGCGCCCCATTAAATTACGTATGCCAAAGTTGCGAGGTGGA AACTGAATACATGGAGATGGAAGAGGCGGCAGAACTAGCCGGAGATTATTTAATTTCTGAACGTGTAGCT CCCGAAGTAAGAAGAGCGATGACTGATCCAGCCCGACTCGGTCAGCTGCGTATCAGTTTAGTCGATGGTC TCCAGGAACAAGGATCAGAGATGATTGACAGACCAGTCTTCTTCGGTGGGCGTGGTATCTCGATGTTCAA AGTAAACCCCTATGGGTTGGACTTGGTGTGGGACAGTGGCGATTCAATCTCCAAGGGGGTGCAAGACTTA CACCCCAACGCTTTCAACCATCCACCCTTCGGAAACCAAGAGGTCATGGAGCAATTAGTTATCCCTAGTA ACCTCATTAACAGACGATGGGATAGTTGGTCTCCCTTCATGGGACCCGAATGCCAGTCGCCTGGCAATGG TCCATACAACATGACCCACAAGGTGATCATCGTCGGCATCAAAGGTGCACACGTCCTGGGTATTTTCACC GTGCCTCTCCTCGGTAACTACACTCAGCCGAACTTCGAATCTGTCTACAGGGACGGGGATATCCGTGGCA ATGTGATGAAGAGCTACAACCAGATCTTCCGCGCTGACGTTCTAAAGCCGGTCGGTGACCACGGCATCGG CAATCTAGACCCGGATTCAATTCAGTTTGTCCCCGCTGATAGGAGCCGTAGTCGCCCCCCTATGGTGTTG GTTACCAGTAGAGTGAGTGGCACCGTCAACCTTTATAGAATTTCTGAAGTTCCAAGGGCTCAGCTCCTCA GACAACAGAGAACTTCTCTTGATGGAGGCGTCGGATGCATAGCGCCCTCTACGACATTGTCATTGTTGTT CTCAATCCTGACTCTTCTGTACGTCACATTACGTCACTAAACCTCACAACTGTATGCTCAGAATATACTG ATCACGTGATTATTGATTCTTTAACACTTGTGAAACAGTCATTCCACATTTGTGGTTCACCCCAATAACT TTCGATTCAGAACCCTAAAAAATATACCAGATGCATGAACAGACAGGGCAAAAATTTCCTCATAAACTGT GTCCATTTCTGTTGCATGACCACATTTGATCTGATCCCAGGAATTTCAATAAGGAAAATAAACTTTACAA TCCCTAAACTTGAAACATTGAGAGGTTCAAGCCATTGTTTAATCGATTAAAGTGTCCTATTTTGATTTTC AACTTACCCATGTATATTGTATTGTACATGTAATATCTAGAAATATGTTAATACCTTAAAATACCTAAAC AAGAGAAACATTTCATGTATTGCTGTAAATAGCCCTTTGTGAAGGAATGTAGTGTATATATTATTGAATT CAGTAGAGCGCATCGCTTTTTGGTTTTATACTATCATGTTTGAAACATGCTGGTAACCGAACGGTTGATT TACATATGAATTTATAAGCATTTTAATTAGGTATATTCAGTAACTATTAGTGGTCATCAGCAAAACTTGG ATCCTACGTATGCTACTATTTTTTGATCTGCTTGTAATATTTTGCACTTCTCACTACAGACATTTACTTT TTTCACGATCTCTTCTCCATTTTGTTCATCATGCTCGCTGACTACGTCTGTCTTTTCTCCCCTCTTCTAC ATTTTGCATTCTCACTCATGTCCTTTCAAATCTTCTCCCATTTTCTCTTTCTCTCCCCCGATTAGTATCC AGGACGCCGTTTCTTGAAACCGTCATGAGTCTAACTTCTTGGACATCTCATTGAAACGTGTGTTTCAGAG TTAACACGCTTCCATGGGATGTCCATGAACTTAGACTCATGACGGTTTCGAGAAACTTGTTCCTGTTCTT TTTATTATCCCCATCCCCCTTCTCTTCCCTATGATCTCCTCTTTATTTCTTACTTCGGACACTGAGCTTT ATAATTGTTAACAAAGTATACTCCGATAACGTGATTGCAAAGACCTTCGGAAAATCAACTTGATTTCAAT TAATTTCAAGTAGGGTCTAATTTCAATAGCCTTGTAAATCACCAATTGACCATTAGAATGAGGTTTTAGG TAAACCAAATATGATTTCTTTGGAATATATATGACGGTATTGAAATATCTTTTGAGTTGATTTCTCGAAA GCCTTGCGATTGTGTTTAATGGATGCTCTGATAAATAATCGTTGTGTTTATCTTGAATTTATTGCAGATT ATGATAAACGTTAAGTATAGTTTAAAATGTATCACATGACATAATTAAAGGATAGTATTAATAATCACAT ATGTTAATAAAAATAAAATAACCAAACTCTTAATCTACATGTACTTTTCTTAAAGACATTCTTTAGATTA TTTACTCCATAAGCGTATCAAACAAATTATTACTTTTTATTCTTCATATCTGACGAAACGAAAGTATAAT GTATGTGGTAAAATTACCTCCAGCGAGTGTTGAATTACAACACTTTCATACTGGATGGTCAACTTGTCAT ATCAATGTCTTTTTGTAAAGTTCTCATTAAAGTTCTTGCTTTGCTTTTATTACACCAGTTTGTTGACAAT GCCCAATCATTGTATTTCAAATGGCTCAACTTAATCTTTCGCTACATTTTCAACCATTTTGAAGGATTTT TTTTTTTTTTTTGGGGGGGGGGGGGGGGACACTCAAAATACCAAGACATTATGTGTCTTGACATATCATT CAGTTGTGAATTTTTGAAGTTGCAGTGAAACTCAAACTGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds