Papers associated with germ layer

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	Neural expression of the Huntington''s disease gene as a chordate evolutionary novelty., Kauffman JS., J Exp Zool B Mol Dev Evol. June 15, 2003; 297 (1): 57-64.
	Expression of a gene encoding a Gata transcription factor during embryogenesis of the starfish Asterina miniata., Hinman VF., Gene Expr Patterns. August 1, 2003; 3 (4): 419-22.
	Signals from primary mesenchyme cells regulate endoderm differentiation in the sea urchin embryo., Hamada M., Dev Growth Differ. August 1, 2003; 45 (4): 339-50.
	Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation., Romano LA., Development. September 1, 2003; 130 (17): 4187-99.
	Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks., Amore G., Dev Biol. September 1, 2003; 261 (1): 55-81.
	Characterization of the upstream region that regulates the transcription of the gene for the precursor to EGF-related peptides, exogastrula-inducing peptides, of the sea urchin Anthocidaris crassispina., Horii K., Comp Biochem Physiol B Biochem Mol Biol. September 1, 2003; 136 (1): 15-26.
	Tight regulation of SpSoxB factors is required for patterning and morphogenesis in sea urchin embryos., Kenny AP., Dev Biol. September 15, 2003; 261 (2): 412-25.
	Impairing Otp homeodomain function in oral ectoderm cells affects skeletogenesis in sea urchin embryos., Cavalieri V., Dev Biol. October 1, 2003; 262 (1): 107-18.
	Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa., Hinman VF., Mech Dev. October 1, 2003; 120 (10): 1165-76.
	Developmental gene regulatory network architecture across 500 million years of echinoderm evolution., Hinman VF., Proc Natl Acad Sci U S A. November 11, 2003; 100 (23): 13356-61.
	Expression of univin, a TGF-beta growth factor, requires ectoderm-ECM interaction and promotes skeletal growth in the sea urchin embryo., Zito F., Dev Biol. December 1, 2003; 264 (1): 217-27.
	Evolution of OTP-independent larval skeleton patterning in the direct-developing sea urchin, Heliocidaris erythrogramma., Zhou N., J Exp Zool B Mol Dev Evol. December 15, 2003; 300 (1): 58-71.
	Divergent patterns of neural development in larval echinoids and asteroids., Nakajima Y., Evol Dev. January 1, 2004; 6 (2): 95-104.
	On the origin of the chordate central nervous system: expression of onecut in the sea urchin embryo., Poustka AJ., Evol Dev. January 1, 2004; 6 (4): 227-36.
	Expression of an Otx gene in the adult rudiment and the developing central nervous system in the vestibula larva of the sea urchin Holopneustes purpurescens., Morris VB., Int J Dev Biol. February 1, 2004; 48 (1): 17-22.
	Commitment and response to inductive signals of primary mesenchyme cells of the sea urchin embryo., Kiyomoto M., Dev Growth Differ. February 1, 2004; 46 (1): 107-14.
	Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo., Duboc V., Dev Cell. March 1, 2004; 6 (3): 397-410.
	Mechanisms of calcium elevation in the micromeres of sea urchin embryos., Yazaki I., Biol Cell. March 1, 2004; 96 (2): 153-67.
	cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin., Cameron RA., Gene Expr Patterns. March 1, 2004; 4 (2): 205-13.
	PI3K inhibitors block skeletogenesis but not patterning in sea urchin embryos., Bradham CA., Dev Dyn. April 1, 2004; 229 (4): 713-21.
	The 5-HT receptor cell is a new member of secondary mesenchyme cell descendants and forms a major blastocoelar network in sea urchin larvae., Katow H., Mech Dev. April 1, 2004; 121 (4): 325-37.
	Role of the ERK-mediated signaling pathway in mesenchyme formation and differentiation in the sea urchin embryo., Fernandez-Serra M., Dev Biol. April 15, 2004; 268 (2): 384-402.
	Expression of an NK2 homeodomain gene in the apical ectoderm defines a new territory in the early sea urchin embryo., Takacs CM., Dev Biol. May 1, 2004; 269 (1): 152-64.
	Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene., Coffman JA., BMC Biol. May 7, 2004; 2 6.
	An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network., Yuh CH., Dev Biol. May 15, 2004; 269 (2): 536-51.
	Differential stability of beta-catenin along the animal-vegetal axis of the sea urchin embryo mediated by dishevelled., Weitzel HE., Development. June 1, 2004; 131 (12): 2947-56.
	Nuclear beta-catenin-dependent Wnt8 signaling in vegetal cells of the early sea urchin embryo regulates gastrulation and differentiation of endoderm and mesodermal cell lineages., Wikramanayake AH., Genesis. July 1, 2004; 39 (3): 194-205.
	A genetic regulatory network for Xenopus mesendoderm formation., Loose M., Dev Biol. July 15, 2004; 271 (2): 467-78.
	Gene regulatory network controlling embryonic specification in the sea urchin., Oliveri P., Curr Opin Genet Dev. August 1, 2004; 14 (4): 351-60.
	Gastrulation in the sea urchin embryo: a model system for analyzing the morphogenesis of a monolayered epithelium., Kominami T., Dev Growth Differ. August 1, 2004; 46 (4): 309-26.
	Oral-aboral axis specification in the sea urchin embryo II. Mitochondrial distribution and redox state contribute to establishing polarity in Strongylocentrotus purpuratus., Coffman JA., Dev Biol. September 1, 2004; 273 (1): 160-71.
	LiCl inhibits the establishment of left-right asymmetry in larvae of the direct-developing echinoid Peronella japonica., Kitazawa C., J Exp Zool A Comp Exp Biol. September 1, 2004; 301 (9): 707-17.
	SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis., Otim O., Dev Biol. September 15, 2004; 273 (2): 226-43.
	Creation of cis-regulatory elements during sea urchin evolution by co-option and optimization of a repetitive sequence adjacent to the spec2a gene., Dayal S., Dev Biol. September 15, 2004; 273 (2): 436-53.
	Behavior of pigment cells closely correlates the manner of gastrulation in sea urchin embryos., Takata H., Zoolog Sci. October 1, 2004; 21 (10): 1025-35.
	R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres., Revilla-i-Domingo R., Dev Biol. October 15, 2004; 274 (2): 438-51.
	Molecular heterotopy in the expression of Brachyury orthologs in order Clypeasteroida (irregular sea urchins) and order Echinoida (regular sea urchins)., Hibino T., Dev Genes Evol. November 1, 2004; 214 (11): 546-58.
	Self-organization of vertebrate mesoderm based on simple boundary conditions., Green JB., Dev Dyn. November 1, 2004; 231 (3): 576-81.
	Expression of Spgatae, the Strongylocentrotus purpuratus ortholog of vertebrate GATA4/5/6 factors., Lee PY., Gene Expr Patterns. December 1, 2004; 5 (2): 161-5.
	Co-option of an oral-aboral patterning mechanism to control left-right differentiation: the direct-developing sea urchin Heliocidaris erythrogramma is sinistralized, not ventralized, by NiCl2., Minsuk SB., Evol Dev. January 1, 2005; 7 (4): 289-300.
	Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma., Wilson KA., Evol Dev. January 1, 2005; 7 (5): 401-15.
	Major regulatory factors in the evolution of development: the roles of goosecoid and Msx in the evolution of the direct-developing sea urchin Heliocidaris erythrogramma., Wilson KA., Evol Dev. January 1, 2005; 7 (5): 416-28.
	The pre-nervous serotonergic system of developing sea urchin embryos and larvae: pharmacologic and immunocytochemical evidence., Buznikov GA., Neurochem Res. January 1, 2005; 30 (6-7): 825-37.
	Expression of AmHNF6, a sea star orthologue of a transcription factor with multiple distinct roles in sea urchin development., Otim O., Gene Expr Patterns. February 1, 2005; 5 (3): 381-6.
	SoxB1 downregulation in vegetal lineages of sea urchin embryos is achieved by both transcriptional repression and selective protein turnover., Angerer LM., Development. March 1, 2005; 132 (5): 999-1008.
	LvGroucho and nuclear beta-catenin functionally compete for Tcf binding to influence activation of the endomesoderm gene regulatory network in the sea urchin embryo., Range RC., Dev Biol. March 1, 2005; 279 (1): 252-67.
	Fibrous component of the blastocoelic extracellular matrix shapes epithelia in concert with mesenchyme cells in starfish embryos., Kaneko H., Dev Dyn. April 1, 2005; 232 (4): 915-27.
	Gene regulatory networks for development., Levine M., Proc Natl Acad Sci U S A. April 5, 2005; 102 (14): 4936-42.
	Xenopus as a model system to study transcriptional regulatory networks., Koide T., Proc Natl Acad Sci U S A. April 5, 2005; 102 (14): 4943-8.
	Strongylocentrotus purpuratus transcription factor GATA-E binds to and represses transcription at an Otx-Goosecoid cis-regulatory element within the aboral ectoderm-specific spec2a enhancer., Kiyama T., Dev Biol. April 15, 2005; 280 (2): 436-47.

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